Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0234661 Rosa chinensis HOM05D009166 ORTHO05D000001 1.1e-44 183.0 93 100.0
RcHm_v2.0_Chr1g0376111 Rosa chinensis HOM05D009166 ORTHO05D000001 1.3e-34 149.4 86 86.0
RcHm_v2.0_Chr3g0448481 Rosa chinensis HOM05D009166 ORTHO05D000001 5.0e-34 147.5 86 87.2
RcHm_v2.0_Chr6g0266721 Rosa chinensis HOM05D000002 ORTHO05D000001 2.5e-33 145.2 86 83.7
RcHm_v2.0_Chr1g0334441 Rosa chinensis HOM05D009166 ORTHO05D000001 7.3e-33 143.7 86 84.9
RcHm_v2.0_Chr3g0472821 Rosa chinensis HOM05D009166 ORTHO05D000001 1.8e-31 139.0 86 80.2
RcHm_v2.0_Chr4g0431731 Rosa chinensis HOM05D009166 ORTHO05D000001 4.4e-30 134.4 86 77.9
RcHm_v2.0_Chr5g0058511 Rosa chinensis HOM05D009166 ORTHO05D000001 1.7e-29 132.5 86 76.7
FvH4_3g04191 Fragaria vesca HOM05D009166 ORTHO05D000001 1.9e-28 129.0 86 75.6
FvH4_4g27903 Fragaria vesca HOM05D009166 ORTHO05D045534 2.3e-26 122.1 86 73.3
FvH4_4g26452 Fragaria vesca HOM05D009166 ORTHO05D000001 8.9e-23 110.2 80 70.0
MD17G1109500 Malus domestica HOM05D000002 ORTHO05D000001 2.5e-17 92.0 88 48.9
RcHm_v2.0_Chr7g0200091 Rosa chinensis HOM05D000002 ORTHO05D000001 2.1e-16 89.0 88 47.7
MD14G1067200 Malus domestica HOM05D000002 ORTHO05D000001 8.1e-16 87.0 84 51.2
MD11G1108900 Malus domestica HOM05D009166 ORTHO05D000001 2.4e-15 85.5 84 50.0
FvH4_5g05651 Fragaria vesca HOM05D000002 ORTHO05D000001 3.1e-15 85.1 86 45.3
FvH4_6g38191 Fragaria vesca HOM05D021504 ORTHO05D025385 4.0e-15 84.7 83 53.0
RcHm_v2.0_Chr5g0022021 Rosa chinensis HOM05D000002 ORTHO05D000001 5.2e-15 84.3 86 45.3
QL05p006955 Quercus lobata HOM05D026028 ORTHO05D000001 6.8e-15 84.0 79 46.8
RcHm_v2.0_Chr2g0159441 Rosa chinensis HOM05D000002 ORTHO05D000001 6.8e-15 84.0 86 55.8
MD11G1242500 Malus domestica HOM05D000002 ORTHO05D000001 8.9e-15 83.6 84 46.4
RcHm_v2.0_Chr2g0156571 Rosa chinensis HOM05D000002 ORTHO05D000001 5.8e-14 80.9 86 46.5
RcHm_v2.0_Chr4g0432071 Rosa chinensis HOM05D014640 ORTHO05D000001 5.8e-14 80.9 74 54.1
FvH4_4g24051 Fragaria vesca HOM05D000002 ORTHO05D000001 7.6e-14 80.5 86 45.3
Hma1.2p1_0718F.1_g208440 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.6e-14 80.5 84 44.0
RcHm_v2.0_Chr1g0366871 Rosa chinensis HOM05D000062 ORTHO05D000043 1.3e-13 79.7 86 45.3
RcHm_v2.0_Chr2g0136201 Rosa chinensis HOM05D000002 ORTHO05D000001 1.7e-13 79.3 88 44.3
RcHm_v2.0_Chr5g0077241 Rosa chinensis HOM05D000002 ORTHO05D000001 3.8e-13 78.2 80 51.2
Dinv08503 Davidia involucrata HOM05D000002 ORTHO05D000001 6.4e-13 77.4 84 46.4
RcHm_v2.0_Chr1g0349331 Rosa chinensis HOM05D000002 ORTHO05D000001 6.4e-13 77.4 80 47.5
RcHm_v2.0_Chr5g0004361 Rosa chinensis HOM05D000002 ORTHO05D000001 6.4e-13 77.4 86 46.5
FvH4_5g38691 Fragaria vesca HOM05D000002 ORTHO05D000001 8.4e-13 77.0 80 51.2
RcHm_v2.0_Chr5g0083071 Rosa chinensis HOM05D000002 ORTHO05D000001 8.4e-13 77.0 80 51.2
RcHm_v2.0_Chr2g0141981 Rosa chinensis HOM05D000002 ORTHO05D000001 1.1e-12 76.6 80 51.2
RcHm_v2.0_Chr1g0344491 Rosa chinensis HOM05D000002 ORTHO05D000001 1.4e-12 76.3 80 52.5
RcHm_v2.0_Chr2g0119341 Rosa chinensis HOM05D000002 ORTHO05D000001 2.4e-12 75.5 86 43.0
RcHm_v2.0_Chr2g0174291 Rosa chinensis HOM05D000002 ORTHO05D000001 2.4e-12 75.5 86 43.0
RcHm_v2.0_Chr4g0436951 Rosa chinensis HOM05D000002 ORTHO05D000001 4.2e-12 74.7 86 44.2
RcHm_v2.0_Chr7g0234441 Rosa chinensis HOM05D013433 ORTHO05D000001 4.2e-12 74.7 86 40.7
RcHm_v2.0_Chr1g0337711 Rosa chinensis HOM05D000002 ORTHO05D000001 7.1e-12 73.9 80 48.8
RcHm_v2.0_Chr2g0117291 Rosa chinensis HOM05D010729 ORTHO05D000001 7.1e-12 73.9 78 44.9
FvH4_6g34291 Fragaria vesca HOM05D002657 ORTHO05D000001 1.2e-11 73.2 86 41.9
RcHm_v2.0_Chr5g0025271 Rosa chinensis HOM05D000002 ORTHO05D000001 1.6e-11 72.8 86 44.2
QL08p005220 Quercus lobata HOM05D000002 ORTHO05D000001 2.1e-11 72.4 82 40.2
FvH4_3g17162 Fragaria vesca HOM05D009166 ORTHO05D000001 2.7e-11 72.0 81 43.2
MD04G1101800 Malus domestica HOM05D009166 ORTHO05D000001 2.7e-11 72.0 85 41.2
FvH4_2g06411 Fragaria vesca HOM05D000002 ORTHO05D000001 4.6e-11 71.2 81 43.2
FvH4_3g07841 Fragaria vesca HOM05D000002 ORTHO05D000001 6.0e-11 70.9 82 41.5
RcHm_v2.0_Chr1g0337651 Rosa chinensis HOM05D000002 ORTHO05D000001 6.0e-11 70.9 86 38.4
RcHm_v2.0_Chr1g0339131 Rosa chinensis HOM05D000002 ORTHO05D000001 7.8e-11 70.5 74 51.4
RcHm_v2.0_Chr3g0482021 Rosa chinensis HOM05D000002 ORTHO05D000001 7.8e-11 70.5 82 39.0
RcHm_v2.0_Chr7g0206111 Rosa chinensis HOM05D009166 ORTHO05D000001 1.7e-10 69.3 41 80.5
FvH4_1g15351 Fragaria vesca HOM05D000002 ORTHO05D000001 3.0e-10 68.6 81 40.7
RcHm_v2.0_Chr5g0017791 Rosa chinensis HOM05D016059 ORTHO05D000001 3.9e-10 68.2 82 40.2
RcHm_v2.0_Chr7g0178931 Rosa chinensis HOM05D000002 ORTHO05D000001 3.9e-10 68.2 82 40.2
FvH4_1g26621 Fragaria vesca HOM05D013433 ORTHO05D000001 5.1e-10 67.8 86 36.0
FvH4_5g36481 Fragaria vesca HOM05D013433 ORTHO05D000001 6.6e-10 67.4 86 38.4
RcHm_v2.0_Chr1g0355351 Rosa chinensis HOM05D000287 ORTHO05D000001 8.7e-10 67.0 84 40.5
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 8.7e-10 67.0 82 39.0
RcHm_v2.0_Chr2g0112811 Rosa chinensis HOM05D000002 ORTHO05D000001 1.1e-09 66.6 83 34.9
RcHm_v2.0_Chr6g0299971 Rosa chinensis HOM05D000002 ORTHO05D000001 1.1e-09 66.6 84 40.5
FvH4_7g10872 Fragaria vesca HOM05D013433 ORTHO05D000001 1.5e-09 66.2 85 35.3
RcHm_v2.0_Chr1g0366991 Rosa chinensis HOM05D009166 ORTHO05D000001 1.9e-09 65.9 85 40.0
FvH4_7g24921 Fragaria vesca HOM05D013433 ORTHO05D000001 2.5e-09 65.5 86 36.0
MELO3C013392.2 Cucumis melo HOM05D000002 ORTHO05D000001 4.3e-09 64.7 85 36.5
CsaV3_7G000640 Cucumis sativus L. HOM05D000002 ORTHO05D000001 4.3e-09 64.7 85 36.5
Hma1.2p1_0576F.1_g181890 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.3e-09 64.7 79 39.2
MD01G1077600 Malus domestica HOM05D009166 ORTHO05D000001 4.3e-09 64.7 66 47.0
RcHm_v2.0_Chr3g0448951 Rosa chinensis HOM05D016059 ORTHO05D025540 7.3e-09 63.9 85 38.8
CSS0025666 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.6e-09 63.5 85 38.8
FvH4_5g21971 Fragaria vesca HOM05D013433 ORTHO05D029348 2.1e-08 62.4 85 35.3
TAR180G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.6e-08 61.6 82 32.9
CSS0031818 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.2e-08 60.8 84 41.7
MELO3C028804.2 Cucumis melo HOM05D000002 ORTHO05D000001 8.1e-08 60.5 86 38.4
MD02G1303700 Malus domestica HOM05D000002 ORTHO05D000001 8.1e-08 60.5 89 34.8
Aqoxy5G02395 Aquilegia oxysepala HOM05D000002 ORTHO05D000001 1.1e-07 60.1 82 39.0
Sabra16G0004600 Salix brachista HOM05D000002 ORTHO05D000001 1.4e-07 59.7 82 36.6
Sabra17G0101800 Salix brachista HOM05D000002 ORTHO05D000001 1.8e-07 59.3 82 36.6
Sabra10G0062000 Salix brachista HOM05D000002 ORTHO05D000001 3.1e-07 58.5 79 38.0
CSS0014384 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.0e-07 58.2 83 38.6
MD17G1115400 Malus domestica HOM05D000002 ORTHO05D000001 4.0e-07 58.2 87 33.3
Hma1.2p1_0951F.1_g240790 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.9e-07 57.4 85 34.1
MD12G1185900 Malus domestica HOM05D000002 ORTHO05D000001 6.9e-07 57.4 85 30.6
Sabra16G0104200 Salix brachista HOM05D000002 ORTHO05D000001 6.9e-07 57.4 82 35.4
MD12G1020900 Malus domestica HOM05D000103 ORTHO05D000001 9.0e-07 57.0 82 36.6
TAR042G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 9.0e-07 57.0 86 32.6
Atru.chr9.1635 Acer truncatum HOM05D000002 ORTHO05D000001 1.2e-06 56.6 85 32.9
Atru.chr2.3036 Acer truncatum HOM05D000002 ORTHO05D000001 1.5e-06 56.2 85 35.3
RcHm_v2.0_Chr7g0206441 Rosa chinensis HOM05D000002 ORTHO05D000001 1.5e-06 56.2 83 32.5
Atru.chr2.2580 Acer truncatum HOM05D000002 ORTHO05D000001 2.0e-06 55.8 78 37.2
FvH4_4g33449 Fragaria vesca HOM05D000002 ORTHO05D000001 2.0e-06 55.8 82 37.8
MD05G1333300 Malus domestica HOM05D000002 ORTHO05D000001 2.0e-06 55.8 87 33.3
MD09G1100700 Malus domestica HOM05D000002 ORTHO05D000001 2.0e-06 55.8 87 34.5
MD07G1259300 Malus domestica HOM05D000002 ORTHO05D000157 2.6e-06 55.5 87 33.3
MD14G1225200 Malus domestica HOM05D000002 ORTHO05D000001 2.6e-06 55.5 82 35.4
Hma1.2p1_0240F.1_g100220 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.4e-06 55.1 85 32.9
MD11G1146000 Malus domestica HOM05D000002 ORTHO05D000001 3.4e-06 55.1 87 33.3
Hma1.2p1_0158F.1_g069590 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.4e-06 54.7 85 32.9
TAR218G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 4.4e-06 54.7 81 38.3
Atru.chr9.1622 Acer truncatum HOM05D000002 ORTHO05D000001 5.8e-06 54.3 85 31.8
Atru.chr9.1623 Acer truncatum HOM05D000002 ORTHO05D000001 5.8e-06 54.3 85 31.8
Ciclev10013318m.g Citrus clementina HOM05D000002 ORTHO05D000001 5.8e-06 54.3 82 36.6
MD00G1024600 Malus domestica HOM05D000002 ORTHO05D000001 5.8e-06 54.3 85 30.6
MD08G1157400 Malus domestica HOM05D025337 ORTHO05D000001 5.8e-06 54.3 76 31.6
MD12G1175300 Malus domestica HOM05D000002 ORTHO05D000001 5.8e-06 54.3 85 30.6
Nn8g39601 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.8e-06 54.3 70 44.3
PSO384G4697 Papaver somniferum HOM05D000002 ORTHO05D000001 5.8e-06 54.3 85 31.8
Sabra06G0154000 Salix brachista HOM05D000002 ORTHO05D000001 5.8e-06 54.3 84 33.3
MD03G1056000 Malus domestica HOM05D000002 ORTHO05D000001 7.6e-06 53.9 85 29.4
Prupe.8G084200 Prunus persica HOM05D000002 ORTHO05D000001 7.6e-06 53.9 85 36.5
Hma1.2p1_0660F.1_g197730 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 9.9e-06 53.5 78 32.1
Sabra12G0050000 Salix brachista HOM05D000002 ORTHO05D000001 9.9e-06 53.5 82 32.9
Sed0010177 Sechium edule HOM05D000002 ORTHO05D000001 9.9e-06 53.5 85 30.6
Sopen01g004950 Solanum pennellii HOM05D000002 ORTHO05D000001 9.9e-06 53.5 81 32.1


User provided reference genes

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