Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 1.1e-281 972.6 499 100.0
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 8.5e-245 850.1 499 88.4
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 3.9e-234 814.7 567 77.4
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 4.4e-225 784.6 500 80.2
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 1.4e-223 779.6 500 81.0
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 1.7e-221 772.7 500 79.8
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 1.2e-203 713.4 431 84.9
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 7.6e-177 624.4 499 65.7
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 7.6e-177 624.4 500 66.4
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 1.1e-175 620.5 507 63.9
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.9e-175 619.8 500 64.6
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 6.0e-174 614.8 530 63.0
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 6.0e-174 614.8 513 65.3
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 1.3e-173 613.6 500 64.2
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 1.7e-173 613.2 505 64.6
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 3.0e-173 612.5 501 64.3
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 9.6e-172 607.4 502 64.7
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 2.1e-171 606.3 453 69.8
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 6.2e-171 604.7 500 64.0
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 8.9e-170 600.9 443 69.3
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 2.0e-169 599.7 508 63.2
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 2.2e-168 596.3 512 62.7
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 9.3e-167 590.9 503 61.6
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 2.7e-166 589.3 503 61.2
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 3.5e-166 589.0 474 65.6
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 2.3e-165 586.3 503 61.0
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 1.6e-163 580.1 501 62.1
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 1.6e-163 580.1 501 59.9
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 6.9e-162 574.7 501 61.7
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 9.0e-162 574.3 507 61.9
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 1.7e-160 570.1 501 59.9
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 2.9e-160 569.3 501 60.3
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 6.4e-160 568.2 506 59.1
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 1.4e-159 567.0 503 59.8
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 7.1e-159 564.7 507 60.0
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 9.3e-159 564.3 508 59.8
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 2.1e-158 563.1 500 61.6
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 3.0e-157 559.3 502 59.2
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 3.9e-157 558.9 517 57.8
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 1.1e-156 557.4 501 59.1
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 5.6e-156 555.1 501 60.3
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 9.6e-156 554.3 475 60.8
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.4e-154 549.7 451 65.4
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 2.0e-153 546.6 500 60.6
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 7.6e-153 544.7 501 58.3
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 1.7e-152 543.5 499 59.1
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 6.4e-152 541.6 471 59.7
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 2.4e-151 539.7 499 57.9
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 2.7e-150 536.2 513 56.9
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 3.5e-150 535.8 501 56.3
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 7.9e-150 534.6 471 59.7
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 1.3e-149 533.9 422 64.9
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 3.0e-149 532.7 500 55.6
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 3.9e-149 532.3 499 59.5
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 5.6e-148 528.5 507 56.8
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 5.6e-148 528.5 498 57.2
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 2.1e-147 526.6 498 56.2
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 2.8e-147 526.2 499 57.5
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 1.2e-145 520.8 493 59.4
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 2.0e-145 520.0 496 54.8
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 4.5e-145 518.8 511 55.0
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 3.8e-144 515.8 498 56.2
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 6.5e-144 515.0 491 56.2
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 6.5e-144 515.0 518 54.4
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 1.9e-143 513.5 495 55.8
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 3.2e-143 512.7 499 54.3
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 2.7e-142 509.6 451 60.3
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 4.6e-142 508.8 511 55.4
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 6.0e-142 508.4 498 53.6
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 1.8e-141 506.9 504 55.4
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 3.3e-140 502.7 496 54.0
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 4.3e-140 502.3 496 54.0
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 4.3e-140 502.3 500 54.4
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 1.6e-139 500.4 509 54.6
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 2.8e-139 499.6 498 53.0
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 3.7e-139 499.2 496 53.6
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 1.1e-138 497.7 509 54.2
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 4.1e-138 495.7 498 53.0
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 4.1e-138 495.7 498 53.0
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 4.5e-137 492.3 499 54.5
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 5.8e-137 491.9 512 52.3
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 1.0e-136 491.1 497 54.9
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 2.9e-136 489.6 443 58.2
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 2.2e-131 473.4 404 62.1
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 2.0e-129 466.8 399 60.4
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 4.5e-129 465.7 532 50.6
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.4e-127 460.7 551 50.1
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 1.4e-127 460.7 505 53.5
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 7.2e-127 458.4 513 50.9
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 1.6e-126 457.2 370 64.1
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 1.1e-124 451.1 510 52.5
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 2.2e-123 446.8 530 46.8
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 1.3e-120 437.6 510 49.8
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 4.1e-114 416.0 369 60.4
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 2.0e-113 413.7 508 49.0
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 3.8e-112 409.5 366 58.5
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 8.5e-112 408.3 507 46.4
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 7.2e-111 405.2 507 46.0
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 9.1e-106 388.3 413 52.1
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 2.2e-99 367.1 406 48.8
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 4.8e-99 365.9 496 44.8
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 1.5e-95 354.4 251 71.3
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 2.0e-92 344.0 501 44.5
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 1.7e-91 340.9 360 53.3
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 8.9e-85 318.5 510 42.0
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 1.3e-72 278.1 513 37.6
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 1.5e-68 264.6 440 37.7
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 8.6e-64 248.8 186 70.4
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 5.6e-63 246.1 268 51.1
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 9.9e-60 235.3 294 46.9
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 3.7e-59 233.4 169 65.1
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 7.8e-57 225.7 248 54.8
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 5.2e-53 213.0 268 46.3
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 1.5e-52 211.5 359 39.0
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 2.9e-51 207.2 428 34.8
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 2.7e-49 200.7 294 44.6
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 8.1e-46 189.1 136 70.6
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 3.2e-42 177.2 108 75.9
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 2.7e-41 174.1 135 68.9
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 1.3e-38 165.2 251 41.4
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 1.4e-34 151.8 358 32.7
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 3.2e-34 150.6 370 30.0
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 5.1e-32 143.3 233 39.1
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 1.3e-30 138.7 183 45.4
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 1.0e-27 129.0 165 54.5
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 4.9e-27 126.7 132 52.3
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 8.7e-24 115.9 143 49.0
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 2.5e-23 114.4 110 60.0
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 1.4e-21 108.6 138 48.6
FAN18G4360 Fragaria x ananassa HOM05D005719 ORTHO05D007030 1.8e-16 91.7 72 70.8
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 4.8e-14 83.6 455 22.9
Lju279C4T1 Lonicera japonica HOM05D005719 ORTHO05D007030 2.4e-13 81.3 110 47.3
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 5.0e-11 73.6 106 37.7
C05p32060 Brassica napus HOM05D005719 ORTHO05D007030 2.0e-07 61.6 88 47.7
BolC5t31933H Brassica oleracea HOM05D005719 ORTHO05D007030 2.0e-07 61.6 88 47.7


User provided reference genes

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