Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 1.7e-157 559.3 286 100.0
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 7.2e-132 474.2 279 88.5
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 7.7e-126 454.1 279 85.3
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.0e-125 451.4 279 84.9
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 1.3e-109 400.2 275 77.5
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 1.5e-108 396.7 282 75.2
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 9.5e-108 394.0 267 78.3
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 5.8e-105 384.8 283 74.9
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 4.9e-104 381.7 282 74.1
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 1.7e-101 373.2 280 72.5
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 6.6e-101 371.3 276 72.1
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 6.2e-99 364.8 277 70.4
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 2.3e-98 362.8 287 70.7
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.2e-97 360.5 280 68.6
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 2.6e-97 359.4 289 68.9
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 4.4e-97 358.6 291 67.7
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 7.6e-97 357.8 285 69.5
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 7.6e-97 357.8 293 69.6
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 1.7e-96 356.7 277 70.0
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 2.9e-96 355.9 291 67.4
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 2.4e-95 352.8 286 70.3
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 7.1e-95 351.3 267 70.4
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 3.5e-94 349.0 238 76.9
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 3.5e-94 349.0 258 69.4
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 6.0e-94 348.2 268 67.9
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 1.3e-93 347.1 278 70.1
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 2.3e-93 346.3 263 70.0
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 2.3e-93 346.3 284 69.0
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 6.6e-93 344.7 285 68.1
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.1e-92 344.0 226 75.2
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 1.1e-92 344.0 254 70.5
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 1.5e-92 343.6 276 68.1
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 1.5e-92 343.6 268 68.7
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 5.6e-92 341.7 278 67.3
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 2.1e-91 339.7 281 66.9
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 3.6e-91 339.0 286 64.3
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 2.4e-90 336.3 225 76.4
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 4.0e-90 335.5 214 78.5
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 4.0e-90 335.5 286 65.7
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 4.0e-90 335.5 286 65.7
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 1.5e-89 333.6 282 65.2
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 1.5e-89 333.6 237 72.2
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 2.6e-89 332.8 271 64.9
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 3.4e-89 332.4 241 71.8
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 4.4e-89 332.0 273 67.8
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 7.6e-89 331.3 272 65.8
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.9e-88 329.3 273 67.8
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 3.8e-88 328.9 276 64.9
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 4.9e-88 328.6 272 65.8
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 6.4e-88 328.2 281 65.8
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 6.4e-88 328.2 282 64.5
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 6.4e-88 328.2 268 65.3
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 1.1e-87 327.4 284 64.1
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.1e-87 327.4 209 78.0
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.1e-87 327.4 253 66.8
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.9e-87 326.6 270 67.8
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 1.9e-87 326.6 282 63.8
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 3.2e-87 325.9 276 67.0
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 5.4e-87 325.1 275 63.3
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 5.4e-87 325.1 201 82.1
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 5.4e-87 325.1 201 82.1
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 5.4e-87 325.1 282 63.1
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.2e-86 323.9 280 64.3
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 1.2e-86 323.9 277 66.4
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 1.6e-86 323.6 271 64.6
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 1.6e-86 323.6 221 76.5
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 1.6e-86 323.6 252 66.7
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 2.1e-86 323.2 237 69.2
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 2.7e-86 322.8 274 66.4
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 2.7e-86 322.8 242 69.4
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.5e-86 322.4 232 72.0
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 4.6e-86 322.0 279 63.1
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 4.6e-86 322.0 265 65.3
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 1.7e-85 320.1 280 64.3
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 2.3e-85 319.7 275 62.9
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 2.3e-85 319.7 209 76.1
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 2.3e-85 319.7 278 62.2
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 3.9e-85 318.9 277 63.5
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 3.9e-85 318.9 237 69.6
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 6.6e-85 318.2 281 63.3
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 8.7e-85 317.8 224 72.8
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.1e-84 317.4 233 69.1
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 1.9e-84 316.6 284 61.6
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.5e-84 316.2 269 64.3
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 5.6e-84 315.1 218 72.5
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 7.3e-84 314.7 252 66.3
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 9.6e-84 314.3 241 68.0
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 1.6e-83 313.5 239 67.4
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 2.1e-83 313.2 241 66.8
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 6.2e-83 311.6 258 65.1
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 8.1e-83 311.2 202 76.7
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.8e-82 310.1 222 72.5
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 1.8e-82 310.1 202 76.7
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 4.0e-82 308.9 199 77.4
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 5.3e-82 308.5 260 64.6
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 1.2e-81 307.4 222 72.1
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 2.0e-81 306.6 199 76.9
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 2.0e-81 306.6 199 76.9
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 9.9e-81 304.3 224 70.5
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 9.9e-81 304.3 229 70.3
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 1.3e-80 303.9 199 79.4
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 1.7e-80 303.5 201 76.1
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 8.4e-80 301.2 202 77.2
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 1.4e-79 300.4 191 77.5
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 2.4e-79 299.7 283 59.7
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.2e-78 297.4 221 69.2
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 1.7e-77 293.5 198 73.2
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 3.9e-77 292.4 197 74.6
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.1e-76 290.8 182 80.8
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 5.6e-76 288.5 248 66.9
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.1e-75 286.6 282 57.1
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 3.6e-75 285.8 200 69.5
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 4.8e-75 285.4 206 69.4
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 4.0e-74 282.3 196 71.4
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 2.6e-73 279.6 196 70.4
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 8.4e-72 274.6 202 68.3
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 8.4e-72 274.6 179 78.2
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 4.2e-71 272.3 177 74.6
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 7.9e-70 268.1 179 74.3
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 3.0e-69 266.2 273 58.2
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 5.1e-69 265.4 177 74.6
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 4.6e-62 242.3 233 55.8
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 2.3e-61 240.0 246 55.7
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 1.1e-60 237.7 234 54.7
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 1.9e-60 236.9 204 63.2
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 2.8e-59 233.0 185 67.6
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 6.3e-59 231.9 165 69.7
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 6.3e-59 231.9 165 69.7
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 1.1e-58 231.1 167 71.3
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 6.9e-58 228.4 242 50.8
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 4.5e-57 225.7 270 54.1
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 2.9e-56 223.0 277 50.2
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 1.5e-52 210.7 190 60.0
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.3e-51 207.6 132 81.1
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 5.0e-48 195.7 112 82.1
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.3e-45 186.8 193 51.3
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 8.8e-45 184.9 210 47.1
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 2.2e-43 180.3 111 79.3
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.5e-39 166.8 88 94.3
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 6.1e-38 162.2 93 86.0
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.1e-34 151.4 206 47.6
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 9.1e-34 148.3 220 42.3
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 1.6e-25 120.9 187 39.6
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.6e-25 120.9 199 38.7
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 3.5e-25 119.8 208 35.6
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 1.0e-24 118.2 70 77.1
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 2.9e-24 116.7 145 48.3
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 8.5e-24 115.2 203 34.5
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 9.4e-23 111.7 120 53.3
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 1.2e-20 104.8 111 56.8
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 2.2e-19 100.5 116 49.1
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.2e-17 94.7 199 34.2
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 2.1e-14 84.0 66 66.7
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 1.1e-10 71.6 70 62.9
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 7.0e-10 68.9 65 56.9
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 2.0e-09 67.4 38 84.2
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 1.7e-08 64.3 154 33.8


User provided reference genes

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