Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0231821 Rosa chinensis HOM05D000078 ORTHO05D000025 4.4e-59 231.1 118 100.0
RcHm_v2.0_Chr7g0231641 Rosa chinensis HOM05D000078 ORTHO05D000025 1.8e-52 209.1 119 93.3
RcHm_v2.0_Chr7g0232021 Rosa chinensis HOM05D000078 ORTHO05D000025 3.4e-51 204.9 119 91.6
RcHm_v2.0_Chr7g0231921 Rosa chinensis HOM05D000078 ORTHO05D000025 8.3e-50 200.3 119 89.9
FAN04G0604 Fragaria x ananassa HOM05D000078 ORTHO05D000025 1.4e-41 172.9 121 81.0
FAN18G2430 Fragaria x ananassa HOM05D000078 ORTHO05D000025 1.9e-41 172.6 121 80.2
FvH4_5g33240 Fragaria vesca HOM05D000078 ORTHO05D000025 3.2e-41 171.8 121 80.2
FAN08G2856 Fragaria x ananassa HOM05D000078 ORTHO05D000025 3.2e-41 171.8 121 80.2
RcHm_v2.0_Chr7g0231901 Rosa chinensis HOM05D000078 ORTHO05D000025 8.6e-39 163.7 95 89.5
Prupe.1G545400 Prunus persica HOM05D000078 ORTHO05D000025 1.8e-28 129.4 124 60.5
MD15G1396500 Malus domestica HOM05D000078 ORTHO05D000025 3.3e-22 108.6 137 53.3
Potri.013G101200 Populus trichocarpa HOM05D000078 ORTHO05D000025 3.8e-18 95.1 116 53.4
Potri.019G075600 Populus trichocarpa HOM05D000078 ORTHO05D000025 3.2e-17 92.0 118 51.7
QL09p002157 Quercus lobata HOM05D000078 ORTHO05D000025 9.3e-17 90.5 119 50.4
QL09p002226 Quercus lobata HOM05D000078 ORTHO05D000025 9.3e-17 90.5 119 50.4
Lj9P699T45 Lonicera japonica HOM05D000078 ORTHO05D000025 2.1e-16 89.4 116 49.1
Prupe.1G545700 Prunus persica HOM05D000078 ORTHO05D000025 2.7e-16 89.0 116 49.1
Hma1.2p1_0468F.1_g158770 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 4.6e-16 88.2 79 67.1
Sabra19G0086100 Salix brachista HOM05D000078 ORTHO05D000025 4.6e-16 88.2 121 49.6
Duzib177G0138 Durio zibethinus HOM05D000078 ORTHO05D000025 7.9e-16 87.4 117 49.6
RcHm_v2.0_Chr7g0231631 Rosa chinensis HOM05D000078 ORTHO05D000025 7.9e-16 87.4 124 46.8
Thecc.08G176200 Theobroma cacao HOM05D000078 ORTHO05D000025 1.3e-15 86.7 116 45.7
CANSAT25G2521 Cannabis sativa HOM05D000078 ORTHO05D000025 2.3e-15 85.9 135 46.7
Cfa008094 Carpinus fangiana HOM05D000078 ORTHO05D000025 2.3e-15 85.9 122 47.5
Haze_13945 Corylus avellana HOM05D000078 ORTHO05D000025 2.3e-15 85.9 122 46.7
Eucgr.F02974 Eucalyptus grandis HOM05D000078 ORTHO05D000025 2.3e-15 85.9 117 46.2
CANSAT25G2469 Cannabis sativa HOM05D000078 ORTHO05D000025 3.0e-15 85.5 122 46.7
Thecc.08G176300 Theobroma cacao HOM05D000078 ORTHO05D000025 6.7e-15 84.3 123 46.3
Ciclev10023857m.g Citrus clementina HOM05D000078 ORTHO05D000025 8.7e-15 84.0 117 46.2
Gohir.D05G255300 Gossypium hirsutum HOM05D000078 ORTHO05D000025 1.5e-14 83.2 116 49.1
FAN04G1516 Fragaria x ananassa HOM05D000078 ORTHO05D000025 2.5e-14 82.4 122 46.7
Cpa.g.sc21.69 Carica papaya HOM05D000078 ORTHO05D000025 3.3e-14 82.0 122 44.3
Glyma.01G231000 Glycine max HOM05D000078 ORTHO05D000025 3.3e-14 82.0 129 46.5
Sed0024076 Sechium edule HOM05D000078 ORTHO05D000025 3.3e-14 82.0 116 46.6
Gohir.A05G253300 Gossypium hirsutum HOM05D000078 ORTHO05D000025 4.3e-14 81.6 116 47.4
Lj9P699T27 Lonicera japonica HOM05D000078 ORTHO05D000025 4.3e-14 81.6 116 43.1
Manes.18G118800 Manihot esculenta HOM05D000078 ORTHO05D000025 4.3e-14 81.6 121 45.5
Cpa.g.sc21.70 Carica papaya HOM05D000078 ORTHO05D000025 5.6e-14 81.3 119 49.6
Duzib268G1281 Durio zibethinus HOM05D000078 ORTHO05D000025 5.6e-14 81.3 116 46.6
Peaxi162Scf00078g00042 Petunia axillaris HOM05D000078 ORTHO05D000025 5.6e-14 81.3 105 49.5
Actinidia29390 Actinidia chinensis HOM05D000078 ORTHO05D000025 7.4e-14 80.9 79 58.2
CiPaw.04G009900 Carya illinoinensis HOM05D000078 ORTHO05D000025 7.4e-14 80.9 79 63.3
Gorai.009G266700 Gossypium raimondii HOM05D000078 ORTHO05D000025 9.6e-14 80.5 119 47.1
Ciclev10024063m.g Citrus clementina HOM05D000078 ORTHO05D000025 1.3e-13 80.1 119 47.1
DCAR_025014 Daucus carota HOM05D000078 ORTHO05D000025 2.1e-13 79.3 117 47.0
MD08G1213600 Malus domestica HOM05D000078 ORTHO05D000025 2.1e-13 79.3 117 46.2
FvH4_5g33220 Fragaria vesca HOM05D000078 ORTHO05D000025 2.8e-13 79.0 122 42.6
TWI75G0957 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 2.8e-13 79.0 110 48.2
Actinidia03523 Actinidia chinensis HOM05D000078 ORTHO05D000025 3.7e-13 78.6 116 46.6
Sabra13G0087800 Salix brachista HOM05D000078 ORTHO05D000025 3.7e-13 78.6 116 43.1
FAN18G3263 Fragaria x ananassa HOM05D000078 ORTHO05D000025 4.8e-13 78.2 122 42.6
Oeu038302.1 Olea europaea HOM05D000078 ORTHO05D000025 4.8e-13 78.2 111 49.5
Potri.013G101100 Populus trichocarpa HOM05D000078 ORTHO05D000025 4.8e-13 78.2 116 42.2
ClCG08G000980 Citrullus lanatus HOM05D000078 ORTHO05D000025 8.1e-13 77.4 114 45.6
Atru.chr13.2440 Acer truncatum HOM05D000078 ORTHO05D000025 1.1e-12 77.0 117 40.2
Eucgr.F02976 Eucalyptus grandis HOM05D000078 ORTHO05D000025 1.1e-12 77.0 116 44.0
CSS0025182 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 1.4e-12 76.6 116 45.7
Duzib177G0701 Durio zibethinus HOM05D000078 ORTHO05D000025 1.4e-12 76.6 123 41.5
Nitab4.5_0000903g0090 Nicotiana tabacum HOM05D000078 ORTHO05D000025 1.4e-12 76.6 81 56.8
Peaxi162Scf00078g00043 Petunia axillaris HOM05D000078 ORTHO05D000025 1.4e-12 76.6 80 56.2
Rhsim02G0173500 Rhododendron simsii HOM05D000078 ORTHO05D000025 1.4e-12 76.6 96 46.9
CsaV3_5G040030 Cucumis sativus L. HOM05D000078 ORTHO05D000025 1.8e-12 76.3 119 44.5
Phvul.002G036000 Phaseolus vulgaris HOM05D000078 ORTHO05D000025 1.8e-12 76.3 132 42.4
CiPaw.03G016200 Carya illinoinensis HOM05D000078 ORTHO05D000025 2.4e-12 75.9 125 48.8
Gohir.D05G255100 Gossypium hirsutum HOM05D000078 ORTHO05D000025 2.4e-12 75.9 117 46.2
Gorai.009G266600 Gossypium raimondii HOM05D000078 ORTHO05D000025 2.4e-12 75.9 117 46.2
Manes.18G118900 Manihot esculenta HOM05D000078 ORTHO05D000025 2.4e-12 75.9 120 45.8
Sed0016894 Sechium edule HOM05D000078 ORTHO05D000025 2.4e-12 75.9 120 46.7
COL.COLO4_24585 Corchorus olitorius HOM05D000078 ORTHO05D000025 3.1e-12 75.5 118 40.7
Haze_13941 Corylus avellana HOM05D000078 ORTHO05D000025 5.3e-12 74.7 116 44.0
Potri.003G054100 Populus trichocarpa HOM05D000078 ORTHO05D000025 5.3e-12 74.7 120 47.5
QL09p003637 Quercus lobata HOM05D000078 ORTHO05D000025 5.3e-12 74.7 118 46.6
Manes.02G208000 Manihot esculenta HOM05D000078 ORTHO05D000025 6.9e-12 74.3 117 45.3
Sopen11g018670 Solanum pennellii HOM05D000078 ORTHO05D000025 6.9e-12 74.3 117 43.6
Cfa008096 Carpinus fangiana HOM05D000078 ORTHO05D000025 9.0e-12 73.9 116 44.0
Ca_24475_v3 Cicer arietinum L. HOM05D000078 ORTHO05D000025 9.0e-12 73.9 106 45.3
MELO3C022181.2 Cucumis melo HOM05D000078 ORTHO05D000025 9.0e-12 73.9 122 43.4
ECA233G4726 Erigeron canadensis HOM05D000078 ORTHO05D000025 9.0e-12 73.9 118 43.2
Psat2g187080 Pisum sativum HOM05D000078 ORTHO05D000025 9.0e-12 73.9 116 39.7
Solyc11g042560.1 Solanum lycopersicum HOM05D000078 ORTHO05D000025 9.0e-12 73.9 117 43.6
CiPaw.03G016300 Carya illinoinensis HOM05D000078 ORTHO05D000025 1.2e-11 73.6 116 42.2
QL09p003610 Quercus lobata HOM05D000078 ORTHO05D000025 1.5e-11 73.2 117 46.2
Potri.019G075500 Populus trichocarpa HOM05D000078 ORTHO05D000025 2.0e-11 72.8 117 41.0
Nitab4.5_0006500g0050 Nicotiana tabacum HOM05D000078 ORTHO05D000025 2.6e-11 72.4 119 44.5
PGSC0003DMG400018054 Solanum tuberosum HOM05D000078 ORTHO05D000025 2.6e-11 72.4 119 45.4
GSVIVG01036389001 Vitis vinifera HOM05D000078 ORTHO05D000025 2.6e-11 72.4 118 40.7
Atru.chr13.2434 Acer truncatum HOM05D000078 ORTHO05D000025 3.4e-11 72.0 119 46.2
Nitab4.5_0000903g0100 Nicotiana tabacum HOM05D000078 ORTHO05D000025 4.5e-11 71.6 120 42.5
TWI18G0816 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 4.5e-11 71.6 113 44.2
Sabra19G0086000 Salix brachista HOM05D000078 ORTHO05D000025 7.6e-11 70.9 116 41.4
TAR376G0201 Trochodendron aralioides HOM05D000078 ORTHO05D000025 7.6e-11 70.9 115 38.3
TWI18G0859 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 9.9e-11 70.5 121 47.1
TAR628G1578 Trochodendron aralioides HOM05D000078 ORTHO05D000025 9.9e-11 70.5 118 39.8
Sed0026632 Sechium edule HOM05D000078 ORTHO05D000025 1.7e-10 69.7 121 43.8
VMungo1215G1543 Vigna mungo HOM05D000078 ORTHO05D000025 1.7e-10 69.7 141 39.7
Lsat_1_v5_gn_6_13161 Lactuca sativa HOM05D000078 ORTHO05D000025 2.2e-10 69.3 91 46.2
Medtr5g008550 Medicago truncatula HOM05D000078 ORTHO05D000025 2.9e-10 68.9 120 38.3
Sabra01G0145600 Salix brachista HOM05D000078 ORTHO05D000025 2.9e-10 68.9 118 39.8
Lj9P700T62 Lonicera japonica HOM05D000078 ORTHO05D000025 3.8e-10 68.6 116 41.4
PGR042G2437 Punica granatum HOM05D000078 ORTHO05D000025 3.8e-10 68.6 120 42.5
Gohir.A02G082900 Gossypium hirsutum HOM05D000078 ORTHO05D000025 4.9e-10 68.2 118 41.5
CiPaw.04G010100 Carya illinoinensis HOM05D000078 ORTHO05D000025 6.4e-10 67.8 116 41.4
Gohir.D02G102600 Gossypium hirsutum HOM05D000078 ORTHO05D000025 6.4e-10 67.8 118 41.5
Gorai.005G116500 Gossypium raimondii HOM05D000078 ORTHO05D000025 6.4e-10 67.8 118 41.5
SalBow7G4192 Salvia bowleyana HOM05D000078 ORTHO05D000025 6.4e-10 67.8 116 43.1
CSS0005758 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 8.4e-10 67.4 116 42.2
CSS0041209 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 8.4e-10 67.4 116 42.2
Gohir.A05G253200 Gossypium hirsutum HOM05D000078 ORTHO05D000025 8.4e-10 67.4 79 51.9
HanXRQChr09g0251211 Helianthus annuus HOM05D000078 ORTHO05D000025 8.4e-10 67.4 78 53.8
MD15G1396900 Malus domestica HOM05D000078 ORTHO05D000025 8.4e-10 67.4 116 41.4
Potri.001G181500 Populus trichocarpa HOM05D000078 ORTHO05D000025 8.4e-10 67.4 116 38.8
CARHR033130 Cardamine hirsuta HOM05D000078 ORTHO05D000025 1.4e-09 66.6 124 43.5
Glyma.11G014200 Glycine max HOM05D000078 ORTHO05D000025 1.9e-09 66.2 119 38.7
PGR042G0030 Punica granatum HOM05D000078 ORTHO05D000025 1.9e-09 66.2 80 52.5
SalBow6G2191 Salvia bowleyana HOM05D000078 ORTHO05D000025 1.9e-09 66.2 112 40.2
SalBow6G5209 Salvia bowleyana HOM05D000078 ORTHO05D000025 1.9e-09 66.2 112 40.2
Nn5g27271 Nelumbo nucifera HOM05D000078 ORTHO05D000025 2.4e-09 65.9 103 43.7
Duzib116G0245 Durio zibethinus HOM05D000078 ORTHO05D000025 3.2e-09 65.5 116 39.7
CAN.G101.2 Capsicum annuum HOM05D000078 ORTHO05D000025 4.2e-09 65.1 116 42.2
Glyma.01G231200 Glycine max HOM05D000078 ORTHO05D000025 4.2e-09 65.1 119 37.8
Lalb_Chr16g0376711 Lupinus albus HOM05D000078 ORTHO05D000025 4.2e-09 65.1 116 38.8
TPR.G37982 Trifolium pratense HOM05D000078 ORTHO05D000025 4.2e-09 65.1 131 38.9
VMungo1309G0056 Vigna mungo HOM05D000078 ORTHO05D000025 5.5e-09 64.7 119 38.7
AT1G33760 Arabidopsis thaliana HOM05D000078 ORTHO05D000025 7.1e-09 64.3 124 40.3
Lsat_1_v5_gn_6_13181 Lactuca sativa HOM05D000078 ORTHO05D000025 1.2e-08 63.5 76 53.9
Phvul.002G035900 Phaseolus vulgaris HOM05D000078 ORTHO05D000025 1.2e-08 63.5 119 35.3
ClCG08G001010 Citrullus lanatus HOM05D000078 ORTHO05D000025 1.6e-08 63.2 116 40.5
CsaV3_5G040010 Cucumis sativus L. HOM05D000078 ORTHO05D000025 1.6e-08 63.2 79 49.4
Sc16g0000730 Simmondsia chinensis HOM05D000078 ORTHO05D000025 1.6e-08 63.2 95 45.3
AUR62032882 Chenopodium quinoa HOM05D000078 ORTHO05D000025 2.1e-08 62.8 121 36.4
MELO3C022179.2 Cucumis melo HOM05D000078 ORTHO05D000025 2.1e-08 62.8 117 41.9
PSO170G4609 Papaver somniferum HOM05D000078 ORTHO05D000025 2.7e-08 62.4 117 37.6
PSO724G0767 Papaver somniferum HOM05D000078 ORTHO05D000025 2.7e-08 62.4 115 38.3
Dinv06236 Davidia involucrata HOM05D000078 ORTHO05D000025 3.5e-08 62.0 75 52.0
LjContig00222g0020539 Lotus japonicus HOM05D000078 ORTHO05D000025 3.5e-08 62.0 122 37.7
PSO017G2149 Papaver somniferum HOM05D000078 ORTHO05D000025 3.5e-08 62.0 117 36.8
Solyc11g042580.1 Solanum lycopersicum HOM05D000078 ORTHO05D000025 3.5e-08 62.0 116 37.1
Sopen11g018710 Solanum pennellii HOM05D000078 ORTHO05D000025 3.5e-08 62.0 116 37.1
RcHm_v2.0_Chr7g0231741 Rosa chinensis HOM05D000078 ORTHO05D000025 4.6e-08 61.6 34 94.1
PGSC0003DMG400017813 Solanum tuberosum HOM05D000078 ORTHO05D000025 4.6e-08 61.6 110 40.9
CARHR291230 Cardamine hirsuta HOM05D000078 ORTHO05D000025 6.0e-08 61.2 117 41.9
TPR.G37946 Trifolium pratense HOM05D000078 ORTHO05D000025 6.0e-08 61.2 120 36.7
Carub.0001s3192 Capsella rubella HOM05D000078 ORTHO05D000025 7.9e-08 60.8 120 44.2
THA.LOC104815861 Tarenaya hassleriana HOM05D000078 ORTHO05D000025 7.9e-08 60.8 121 42.1
AL1G48170 Arabidopsis lyrata HOM05D000078 ORTHO05D000025 1.3e-07 60.1 98 43.9
DCAR_003513 Daucus carota HOM05D000078 ORTHO05D000025 1.3e-07 60.1 79 50.6
DCAR_003514 Daucus carota HOM05D000078 ORTHO05D000025 1.3e-07 60.1 79 50.6
Sp1g29080 Schrenkiella parvula HOM05D000078 ORTHO05D000025 1.3e-07 60.1 120 42.5
Actinidia03524 Actinidia chinensis HOM05D013777 ORTHO05D000921 1.8e-07 59.7 59 62.7
THA.LOC104800084 Tarenaya hassleriana HOM05D000078 ORTHO05D000025 2.3e-07 59.3 118 39.0
AUR62005890 Chenopodium quinoa HOM05D000078 ORTHO05D000025 3.0e-07 58.9 118 37.3
Oeu028105.1 Olea europaea HOM05D000078 ORTHO05D000025 3.0e-07 58.9 99 43.4
Oeu028106.1 Olea europaea HOM05D000078 ORTHO05D000025 3.0e-07 58.9 99 43.4
Oeu028107.1 Olea europaea HOM05D000078 ORTHO05D000025 3.0e-07 58.9 99 43.4
BolC8t47885H Brassica oleracea HOM05D000078 ORTHO05D000025 3.9e-07 58.5 97 42.3
GSVIVG01036388001 Vitis vinifera HOM05D000078 ORTHO05D000025 3.9e-07 58.5 116 35.3
Eucgr.F02975 Eucalyptus grandis HOM05D000078 ORTHO05D000025 6.7e-07 57.8 77 49.4
Aa31LG4G9130 Aethionema arabicum HOM05D000078 ORTHO05D000025 1.1e-06 57.0 118 38.1
Carub.0001s3193 Capsella rubella HOM05D000078 ORTHO05D000025 1.1e-06 57.0 122 43.4
Lalb_Chr16g0376721 Lupinus albus HOM05D000078 ORTHO05D000025 1.5e-06 56.6 115 35.7
Medtr5g008590 Medicago truncatula HOM05D000078 ORTHO05D000025 1.5e-06 56.6 125 33.6
Aqoxy5G00846 Aquilegia oxysepala HOM05D000111 ORTHO05D000025 1.9e-06 56.2 116 37.9
BcaB04g17914 Brassica carinata HOM05D000078 ORTHO05D000025 2.5e-06 55.8 89 44.9
A02p17300 Brassica napus HOM05D000078 ORTHO05D000025 3.3e-06 55.5 116 38.8
BraA02t06778Z Brassica rapa HOM05D000078 ORTHO05D000025 3.3e-06 55.5 116 38.8
PSO386G0174 Papaver somniferum HOM05D000078 ORTHO05D000025 3.3e-06 55.5 117 36.8
BcaB03g13691 Brassica carinata HOM05D000078 ORTHO05D000025 4.3e-06 55.1 120 40.8
BcaC05g27799 Brassica carinata HOM05D000078 ORTHO05D000025 4.3e-06 55.1 89 44.9
C05p37960 Brassica napus HOM05D000078 ORTHO05D000025 4.3e-06 55.1 89 44.9
BolC5t32527H Brassica oleracea HOM05D000078 ORTHO05D000025 4.3e-06 55.1 89 44.9
BraA05t21304Z Brassica rapa HOM05D000078 ORTHO05D000025 4.3e-06 55.1 123 39.8
Ca_24476_v3 Cicer arietinum L. HOM05D000078 ORTHO05D000025 4.3e-06 55.1 127 35.4
BcaC08g45775 Brassica carinata HOM05D000078 ORTHO05D000025 5.6e-06 54.7 117 39.3
BolC2t08945H Brassica oleracea HOM05D000078 ORTHO05D000025 5.6e-06 54.7 116 38.8
Thhalv10010002m.g Eutrema salsugineum HOM05D000078 ORTHO05D000025 5.6e-06 54.7 120 41.7
C06p35580 Brassica napus HOM05D000078 ORTHO05D000025 7.4e-06 54.3 117 38.5
BolC6t38679H Brassica oleracea HOM05D000078 ORTHO05D000025 7.4e-06 54.3 117 38.5
Lsat_1_v5_gn_3_24201 Lactuca sativa HOM05D000078 ORTHO05D000025 7.4e-06 54.3 118 34.7
Psat0s1625g0040 Pisum sativum HOM05D000078 ORTHO05D000025 7.4e-06 54.3 127 34.6


User provided reference genes

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