Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0231611 Rosa chinensis HOM05D005301 ORTHO05D006433 3.0e-78 295.0 145 100.0
RcHm_v2.0_Chr6g0266051 Rosa chinensis HOM05D005301 ORTHO05D006433 6.8e-54 214.2 140 80.7
HPP92_004584 Vanilla planifolia HOM05D005301 ORTHO05D006433 2.4e-27 125.9 103 61.2
RcHm_v2.0_Chr7g0191331 Rosa chinensis HOM05D005301 ORTHO05D006433 2.3e-25 119.4 58 94.8
Prupe.5G157400 Prunus persica HOM05D005301 ORTHO05D006433 5.1e-25 118.2 58 93.1
FvH4_5g07300 Fragaria vesca HOM05D005301 ORTHO05D006433 1.5e-24 116.7 58 93.1
FAN04G2720 Fragaria x ananassa HOM05D005301 ORTHO05D006433 1.5e-24 116.7 58 93.1
FAN08G2537 Fragaria x ananassa HOM05D005301 ORTHO05D006433 1.5e-24 116.7 58 93.1
FAN18G2536 Fragaria x ananassa HOM05D005301 ORTHO05D006433 1.5e-24 116.7 58 93.1
MD06G1157400 Malus domestica HOM05D005301 ORTHO05D006433 3.3e-24 115.5 58 89.7
MD14G1164000 Malus domestica HOM05D005301 ORTHO05D006433 3.3e-24 115.5 58 89.7
FAN13G0064 Fragaria x ananassa HOM05D005301 ORTHO05D006433 7.4e-24 114.4 58 91.4
Cfa018895 Carpinus fangiana HOM05D005301 ORTHO05D006433 9.6e-24 114.0 64 81.2
Haze_07279 Corylus avellana HOM05D005301 ORTHO05D006433 9.6e-24 114.0 64 81.2
PGR083G1269 Punica granatum HOM05D005301 ORTHO05D006433 1.6e-23 113.2 64 79.7
Duzib205G0739 Durio zibethinus HOM05D005301 ORTHO05D006433 2.1e-23 112.8 58 86.2
Manes.06G114900 Manihot esculenta HOM05D005301 ORTHO05D006433 2.1e-23 112.8 58 87.9
Atru.chr9.1005 Acer truncatum HOM05D005301 ORTHO05D006433 3.7e-23 112.1 58 87.9
Thecc.03G122400 Theobroma cacao HOM05D005301 ORTHO05D006433 3.7e-23 112.1 64 78.1
CiPaw.11G012400 Carya illinoinensis HOM05D005301 ORTHO05D006433 4.8e-23 111.7 58 84.5
Ciclev10019136m.g Citrus clementina HOM05D005301 ORTHO05D006433 6.2e-23 111.3 58 87.9
Aa31LG3G5920 Aethionema arabicum HOM05D005301 ORTHO05D006433 8.2e-23 110.9 58 84.5
AL8G24360 Arabidopsis lyrata HOM05D005301 ORTHO05D006433 8.2e-23 110.9 58 84.5
AT5G50310 Arabidopsis thaliana HOM05D005301 ORTHO05D006433 8.2e-23 110.9 58 84.5
BcaC01g04820 Brassica carinata HOM05D005301 ORTHO05D006433 8.2e-23 110.9 58 84.5
A03p27760 Brassica napus HOM05D005301 ORTHO05D006433 8.2e-23 110.9 58 84.5
C03p33480 Brassica napus HOM05D005301 ORTHO05D006433 8.2e-23 110.9 58 84.5
BolC3t15670H Brassica oleracea HOM05D005301 ORTHO05D006433 8.2e-23 110.9 58 84.5
BraA03t11987Z Brassica rapa HOM05D005301 ORTHO05D006433 8.2e-23 110.9 58 84.5
Carub.0008s1035 Capsella rubella HOM05D005301 ORTHO05D006433 8.2e-23 110.9 58 84.5
CARHR258240 Cardamine hirsuta HOM05D005301 ORTHO05D006433 8.2e-23 110.9 58 84.5
Thhalv10012907m.g Eutrema salsugineum HOM05D005301 ORTHO05D006433 1.1e-22 110.5 58 82.8
QL10p005311 Quercus lobata HOM05D005301 ORTHO05D006433 1.1e-22 110.5 64 78.1
Aqoxy5G03589 Aquilegia oxysepala HOM05D005301 ORTHO05D006433 1.4e-22 110.2 58 87.9
TAR374G1436 Trochodendron aralioides HOM05D005301 ORTHO05D006433 1.4e-22 110.2 58 87.9
GSVIVG01007548001 Vitis vinifera HOM05D005301 ORTHO05D006433 1.4e-22 110.2 58 87.9
Cpa.g.sc52.37 Carica papaya HOM05D005301 ORTHO05D006433 1.8e-22 109.8 58 86.2
Gohir.D12G190800 Gossypium hirsutum HOM05D005301 ORTHO05D006433 1.8e-22 109.8 58 84.5
Gorai.008G204700 Gossypium raimondii HOM05D005301 ORTHO05D006433 1.8e-22 109.8 58 84.5
Peaxi162Scf00089g00721 Petunia axillaris HOM05D005301 ORTHO05D006433 1.8e-22 109.8 58 84.5
BcaB01g02903 Brassica carinata HOM05D005301 ORTHO05D006433 2.4e-22 109.4 58 82.8
CANSAT80G2324 Cannabis sativa HOM05D005301 ORTHO05D006433 3.1e-22 109.0 82 67.1
Sabra15G0112300 Salix brachista HOM05D005301 ORTHO05D006433 3.1e-22 109.0 58 84.5
ClCG06G017670 Citrullus lanatus HOM05D005301 ORTHO05D006433 4.0e-22 108.6 64 76.6
Eucgr.L01339 Eucalyptus grandis HOM05D005301 ORTHO05D006433 4.0e-22 108.6 58 84.5
Gohir.A12G188000 Gossypium hirsutum HOM05D005301 ORTHO05D006433 4.0e-22 108.6 58 84.5
CsaV3_1G000790 Cucumis sativus L. HOM05D005301 ORTHO05D006433 5.3e-22 108.2 58 82.8
Sp6g12390 Schrenkiella parvula HOM05D005301 ORTHO05D006433 5.3e-22 108.2 58 82.8
Nn4g22465 Nelumbo nucifera HOM05D005301 ORTHO05D006433 6.9e-22 107.8 58 82.8
Potri.015G090100 Populus trichocarpa HOM05D005301 ORTHO05D006433 6.9e-22 107.8 58 82.8
TWI39G1189 Tripterygium wilfordii HOM05D005301 ORTHO05D006433 6.9e-22 107.8 58 82.8
ATR0824G115 Amborella trichopoda HOM05D004726 ORTHO05D005986 9.0e-22 107.5 58 81.0
CAN.G352.5 Capsicum annuum HOM05D005301 ORTHO05D006433 9.0e-22 107.5 58 82.8
Glyma.04G192600 Glycine max HOM05D005301 ORTHO05D006433 9.0e-22 107.5 58 82.8
Lalb_Chr11g0069731 Lupinus albus HOM05D005301 ORTHO05D006433 9.0e-22 107.5 58 82.8
Nitab4.5_0003282g0130 Nicotiana tabacum HOM05D005301 ORTHO05D006433 9.0e-22 107.5 58 82.8
Nitab4.5_0010042g0030 Nicotiana tabacum HOM05D005301 ORTHO05D006433 9.0e-22 107.5 58 82.8
Solyc03g111390.4 Solanum lycopersicum HOM05D005301 ORTHO05D006433 9.0e-22 107.5 58 82.8
Sopen03g030520 Solanum pennellii HOM05D005301 ORTHO05D006433 9.0e-22 107.5 58 82.8
PGSC0003DMG400015238 Solanum tuberosum HOM05D005301 ORTHO05D006433 9.0e-22 107.5 58 82.8
THA.LOC104825004 Tarenaya hassleriana HOM05D005301 ORTHO05D006433 9.0e-22 107.5 58 82.8
Phvul.009G169100 Phaseolus vulgaris HOM05D005301 ORTHO05D006433 1.2e-21 107.1 58 81.0
Psat6g217880 Pisum sativum HOM05D005301 ORTHO05D006433 1.2e-21 107.1 58 82.8
arahy.Tifrunner.gnm1.ann1.11HRG0 Arachis hypogaea HOM05D005301 ORTHO05D006433 1.5e-21 106.7 58 81.0
arahy.Tifrunner.gnm1.ann1.86E75A Arachis hypogaea HOM05D005301 ORTHO05D006433 1.5e-21 106.7 58 81.0
SalBow4G2023 Salvia bowleyana HOM05D005301 ORTHO05D006433 1.5e-21 106.7 58 81.0
MBI06_g16660_MAGBIO Magnolia biondii HOM05D005301 ORTHO05D006433 2.0e-21 106.3 58 81.0
Dinv11108 Davidia involucrata HOM05D005301 ORTHO05D006433 2.6e-21 105.9 58 84.5
Lj1g0016804 Lotus japonicus HOM05D005301 ORTHO05D006433 2.6e-21 105.9 58 81.0
Oeu011576.1 Olea europaea HOM05D005301 ORTHO05D006433 2.6e-21 105.9 58 82.8
Sed0013046 Sechium edule HOM05D005301 ORTHO05D006433 2.6e-21 105.9 58 81.0
Medtr1g107265 Medicago truncatula HOM05D005301 ORTHO05D006433 3.4e-21 105.5 58 79.3
Sc22g0004050 Simmondsia chinensis HOM05D005301 ORTHO05D006433 3.4e-21 105.5 58 84.5
Actinidia16194 Actinidia chinensis HOM05D005301 ORTHO05D006433 4.5e-21 105.1 58 82.8
Glyma.06G173200 Glycine max HOM05D005301 ORTHO05D006433 4.5e-21 105.1 58 81.0
SGA_v2.0_scaffold102G29851 Striga asiatica HOM05D005301 ORTHO05D006433 4.5e-21 105.1 58 81.0
vmacro19243 Vaccinium macrocarpon HOM05D005301 ORTHO05D006433 4.5e-21 105.1 58 82.8
EL10Ac7g18070 Beta vulgaris HOM05D005301 ORTHO05D006433 5.8e-21 104.8 58 84.5
AUR62001274 Chenopodium quinoa HOM05D005301 ORTHO05D006433 5.8e-21 104.8 105 56.2
Cc04_g10470 Coffea canephora HOM05D005301 ORTHO05D006433 5.8e-21 104.8 58 82.8
PSO063G0990 Papaver somniferum HOM05D005301 ORTHO05D006433 1.0e-20 104.0 58 79.3
ECA232G2312 Erigeron canadensis HOM05D005301 ORTHO05D006433 1.3e-20 103.6 58 77.6
Migut.I00257 Erythranthe guttata HOM05D005301 ORTHO05D006433 1.3e-20 103.6 58 79.3
Ca_16092_v3 Cicer arietinum L. HOM05D005301 ORTHO05D006433 1.7e-20 103.2 56 80.4
HanXRQChr09g0272861 Helianthus annuus HOM05D005301 ORTHO05D006433 2.2e-20 102.8 58 79.3
Rhsim08G0184700 Rhododendron simsii HOM05D005301 ORTHO05D006433 2.2e-20 102.8 92 59.8
CDE02G1357 Ceratophyllum demersum HOM05D005301 ORTHO05D006433 3.8e-20 102.1 58 79.3
Os04g0483600 Oryza sativa ssp. japonica HOM05D005301 ORTHO05D006433 3.8e-20 102.1 58 75.9
QL04p021669 Quercus lobata HOM05D005301 ORTHO05D006433 3.8e-20 102.1 64 73.4
SMO339G0058 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 3.8e-20 102.1 58 79.3
Lsat_1_v5_gn_4_78900 Lactuca sativa HOM05D005301 ORTHO05D006433 8.4e-20 100.9 58 77.6
Zm00001eb079290 Zea mays HOM05D005301 ORTHO05D006433 8.4e-20 100.9 58 75.9
PSO782G4848 Papaver somniferum HOM05D005301 ORTHO05D006433 1.1e-19 100.5 58 77.6
AagrBONN_evm.TU.Sc2ySwM_344.1825 Anthoceros agrestis HOM05D005301 ORTHO05D006433 7.1e-19 97.8 57 70.2
Mapoly0001s0540 Marchantia polymorpha HOM05D005301 ORTHO05D006433 7.1e-19 97.8 59 71.2
Actinidia19384 Actinidia chinensis HOM05D005301 ORTHO05D006433 9.3e-19 97.4 64 71.9
Pp3c16_5780 Physcomitrium patens HOM05D005301 ORTHO05D006433 2.7e-18 95.9 56 73.2
CBR_g40809 Chara braunii HOM05D005301 ORTHO05D006433 2.3e-17 92.8 58 72.4
Ah.08g218140 Amaranthus hybridus HOM05D005301 ORTHO05D006433 6.9e-14 81.3 46 80.4
BcaC01g04819 Brassica carinata HOM05D005301 ORTHO05D006433 7.7e-13 77.8 58 63.8
MELO3C026231.2 Cucumis melo HOM05D005301 ORTHO05D006433 1.0e-12 77.4 43 76.7
Eucgr.B00150 Eucalyptus grandis HOM05D005301 ORTHO05D006433 3.2e-11 72.4 103 39.8
unitig_899.g15425 Utricularia gibba HOM05D005301 ORTHO05D006433 2.7e-10 69.3 38 76.3
TPR.G3295 Trifolium pratense HOM05D005301 ORTHO05D006433 6.1e-10 68.2 62 54.8
Lj9A475G63 Lonicera japonica HOM05D005301 ORTHO05D006433 1.8e-09 66.6 54 59.3
COL.COLO4_09264 Corchorus olitorius HOM05D005301 ORTHO05D006433 3.0e-09 65.9 90 38.9
AUR62025732 Chenopodium quinoa HOM05D005301 ORTHO05D006433 5.1e-09 65.1 38 76.3
Cre09.g398200 Chlamydomonas reinhardtii HOM05D005301 ORTHO05D006433 3.3e-08 62.4 59 49.2


User provided reference genes

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