Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 8.4e-142 507.3 310 100.0
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 1.4e-117 426.8 309 90.0
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.2e-117 425.2 316 84.2
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 7.9e-116 421.0 311 84.9
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.3e-114 415.6 316 78.2
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 2.5e-106 389.4 310 78.1
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 9.7e-90 334.3 318 68.9
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 1.3e-89 334.0 316 66.8
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.8e-89 332.8 311 68.8
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 8.2e-89 331.3 320 61.6
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 1.8e-88 330.1 318 69.8
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 4.1e-88 328.9 319 69.9
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 2.0e-87 326.6 314 68.8
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 1.3e-86 323.9 327 64.2
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 2.2e-86 323.2 321 64.5
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 1.1e-85 320.9 316 65.2
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.4e-85 320.5 324 69.4
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 3.2e-85 319.3 309 65.4
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.0e-83 314.3 332 61.4
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.0e-83 314.3 319 61.4
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.4e-83 313.9 332 59.3
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.4e-83 313.9 323 64.4
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 2.6e-82 309.7 309 65.0
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 4.4e-82 308.9 332 59.0
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 1.3e-81 307.4 325 67.7
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 2.2e-81 306.6 317 65.3
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 6.3e-81 305.1 305 61.6
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.4e-80 303.9 316 65.5
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.4e-80 303.1 314 62.7
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 3.1e-80 302.8 315 63.5
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 1.7e-78 297.0 312 66.3
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 2.2e-78 296.6 320 60.0
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 8.5e-78 294.7 312 66.0
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 8.5e-78 294.7 310 58.1
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 1.1e-77 294.3 322 60.2
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 4.2e-77 292.4 320 60.0
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 7.2e-77 291.6 311 66.2
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 9.4e-77 291.2 308 67.9
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 1.2e-76 290.8 311 60.5
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 3.6e-76 289.3 319 62.4
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 8.0e-76 288.1 319 59.2
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 1.0e-75 287.7 311 63.0
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.8e-75 287.0 319 59.2
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 4.0e-75 285.8 315 58.1
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 5.2e-75 285.4 304 65.8
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 6.7e-75 285.0 307 61.2
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 8.8e-75 284.6 312 64.4
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 8.8e-75 284.6 316 60.4
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 1.5e-74 283.9 315 60.6
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.0e-74 283.5 313 61.3
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 2.0e-74 283.5 316 58.9
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 2.6e-74 283.1 317 64.4
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 4.4e-74 282.3 303 66.3
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 5.7e-74 282.0 321 63.2
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 2.2e-73 280.0 309 61.2
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 2.2e-73 280.0 299 61.9
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 4.8e-73 278.9 319 58.9
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 8.2e-73 278.1 307 61.9
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 2.4e-72 276.6 317 58.0
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.1e-72 276.2 323 62.8
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 5.3e-72 275.4 306 64.1
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 9.1e-72 274.6 307 57.7
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 9.1e-72 274.6 302 68.2
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.0e-71 273.5 333 53.5
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 2.0e-71 273.5 290 56.2
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 2.7e-71 273.1 316 58.5
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 2.7e-71 273.1 316 58.5
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 3.5e-71 272.7 327 63.6
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 3.5e-71 272.7 313 60.4
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 4.5e-71 272.3 324 54.0
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 4.5e-71 272.3 306 61.8
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.0e-70 271.2 330 53.6
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 1.0e-70 271.2 328 62.5
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.3e-70 270.8 306 64.4
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.7e-70 270.4 319 56.7
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.7e-70 270.4 319 56.7
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 2.2e-70 270.0 320 63.1
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 2.9e-70 269.6 328 62.2
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 3.2e-69 266.2 319 64.3
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 4.2e-69 265.8 295 64.1
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 5.5e-69 265.4 311 58.5
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 9.4e-69 264.6 316 57.6
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 1.2e-68 264.2 332 59.0
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 1.2e-68 264.2 311 60.5
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 1.2e-68 264.2 309 62.5
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 1.6e-68 263.8 303 66.7
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 1.6e-68 263.8 303 66.7
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 1.6e-68 263.8 358 56.4
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 2.7e-68 263.1 306 60.5
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 2.7e-68 263.1 319 54.9
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 3.6e-68 262.7 322 57.5
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 6.1e-68 261.9 314 58.3
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 4.0e-67 259.2 309 65.4
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 4.0e-67 259.2 314 60.8
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 5.2e-67 258.8 315 57.5
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 6.8e-67 258.5 412 47.1
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 9.8e-66 254.6 310 58.4
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 2.8e-65 253.1 319 60.5
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 3.1e-64 249.6 321 53.6
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 2.0e-63 246.9 312 59.0
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 3.5e-63 246.1 328 58.5
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 7.7e-63 245.0 315 57.8
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 2.3e-62 243.4 319 54.2
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 6.5e-62 241.9 311 59.2
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 6.5e-62 241.9 314 57.3
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 3.3e-61 239.6 324 57.7
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 3.3e-61 239.6 311 56.9
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 5.5e-61 238.8 306 56.9
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 7.2e-61 238.4 317 55.2
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 2.1e-60 236.9 303 61.1
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 2.8e-60 236.5 317 60.3
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.0e-59 234.6 325 53.5
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 1.4e-59 234.2 317 58.0
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.8e-59 233.8 324 55.6
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 2.3e-59 233.4 317 57.1
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 5.2e-59 232.3 310 62.3
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 6.8e-59 231.9 311 57.9
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 4.4e-58 229.2 320 53.4
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 9.8e-58 228.0 307 59.0
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.3e-57 227.6 302 53.6
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 4.9e-57 225.7 304 54.6
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 6.3e-57 225.3 302 51.7
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 1.4e-56 224.2 299 63.5
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 1.8e-56 223.8 319 57.1
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 2.4e-56 223.4 324 56.2
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 1.6e-55 220.7 281 54.4
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 3.5e-55 219.5 315 53.3
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 7.8e-55 218.4 304 56.2
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 8.6e-54 214.9 309 58.9
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 2.5e-53 213.4 302 49.7
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 2.8e-52 209.9 301 55.1
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 3.6e-52 209.5 313 49.2
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 6.1e-52 208.8 312 51.3
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 5.2e-51 205.7 297 51.5
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 5.8e-50 202.2 320 50.0
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 7.5e-50 201.8 317 50.8
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 2.2e-49 200.3 298 53.4
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 2.9e-49 199.9 303 52.8
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 3.7e-49 199.5 225 59.1
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 1.1e-48 198.0 240 59.6
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.4e-48 197.6 225 57.3
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 9.2e-48 194.9 301 50.5
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 2.8e-44 183.3 150 62.0
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.4e-43 181.0 130 67.7
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 2.3e-43 180.3 244 61.9
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 6.4e-41 172.2 128 66.4
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 5.0e-38 162.5 314 42.7
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 8.6e-38 161.8 290 45.2
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 1.9e-37 160.6 315 44.8
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 9.5e-37 158.3 130 61.5
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-35 154.8 103 72.8
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 2.3e-35 153.7 265 50.2
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.5e-34 151.0 224 55.4
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 8.3e-33 145.2 333 48.3
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 2.7e-31 140.2 212 51.4
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 3.0e-30 136.7 315 47.6
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 1.5e-29 134.4 330 44.2
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 4.7e-28 129.4 170 63.5
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 1.8e-27 127.5 100 62.0
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 1.2e-26 124.8 312 35.9
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 1.7e-25 120.9 80 77.5
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.2e-23 114.8 93 67.7
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 1.2e-23 114.8 85 71.8
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 1.7e-22 110.9 340 40.6
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 5.1e-22 109.4 87 67.8
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.1e-21 108.2 180 47.2
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 9.6e-21 105.1 198 58.1
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 4.0e-19 99.8 86 53.5
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.4e-18 96.7 63 76.2
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.7e-17 94.4 68 70.6
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.9e-17 93.6 210 41.4
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 6.4e-17 92.4 75 66.7
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 1.3e-14 84.7 81 58.0
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.3e-14 84.7 113 50.4
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.1e-13 81.6 44 93.2
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 9.6e-13 78.6 89 56.2
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 1.3e-12 78.2 64 54.7
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 5.3e-11 72.8 287 40.8
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 7.6e-10 68.9 85 51.8
SEGI_25865 Sequoiadendron giganteum HOM05D000010 ORTHO05D004484 1.2e-07 61.6 81 48.1
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.8e-06 57.8 74 51.4
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 6.7e-06 55.8 263 43.3


User provided reference genes

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