Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0230641 Rosa chinensis HOM05D002804 ORTHO05D003755 2.4e-41 171.8 88 100.0
FAN18G3851 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-18 95.9 71 69.0
FAN18G3590 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.2e-18 93.6 71 63.4
FAN18G3729 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.2e-18 93.6 71 63.4
FAN04G0362 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.9e-16 87.4 67 62.7
FvH4_5g35070 Fragaria vesca HOM05D002804 ORTHO05D029636 2.2e-15 85.5 71 54.9
FvH4_5g35080 Fragaria vesca HOM05D002804 ORTHO05D003755 5.0e-15 84.3 71 59.2
FvH4_5g35322 Fragaria vesca HOM05D002804 ORTHO05D003755 1.4e-14 82.8 71 57.7
RcHm_v2.0_Chr7g0218341 Rosa chinensis HOM05D002804 ORTHO05D003755 9.4e-14 80.1 70 55.7
FAN08G3046 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.6e-13 78.2 69 58.0
FAN13G2866 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.6e-13 77.8 70 54.3
FAN18G3080 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.6e-13 77.8 70 54.3
FvH4_5g34950 Fragaria vesca HOM05D002804 ORTHO05D003755 1.4e-12 76.3 71 53.5
FvH4_5g31070 Fragaria vesca HOM05D002804 ORTHO05D003755 1.8e-12 75.9 71 52.1
FvH4_5g35050 Fragaria vesca HOM05D002804 ORTHO05D003755 1.8e-12 75.9 72 51.4
RcHm_v2.0_Chr7g0236031 Rosa chinensis HOM05D002804 ORTHO05D003755 8.8e-12 73.6 71 49.3
RcHm_v2.0_Chr0c11g0499461 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-11 73.2 83 47.0
RcHm_v2.0_Chr7g0235811 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-11 73.2 71 53.5
RcHm_v2.0_Chr7g0236191 Rosa chinensis HOM05D002804 ORTHO05D022637 1.1e-11 73.2 83 47.0
RcHm_v2.0_Chr7g0235901 Rosa chinensis HOM05D002804 ORTHO05D003755 2.0e-11 72.4 71 47.9
FvH4_5g32080 Fragaria vesca HOM05D002804 ORTHO05D029665 2.5e-11 72.0 70 51.4
RcHm_v2.0_Chr7g0236021 Rosa chinensis HOM05D002804 ORTHO05D003755 2.5e-11 72.0 71 47.9
RcHm_v2.0_Chr0c11g0499511 Rosa chinensis HOM05D002804 ORTHO05D003755 3.3e-11 71.6 71 52.1
RcHm_v2.0_Chr0c11g0499411 Rosa chinensis HOM05D002804 ORTHO05D003755 5.7e-11 70.9 71 49.3
RcHm_v2.0_Chr0c11g0499401 Rosa chinensis HOM05D002804 ORTHO05D022637 7.4e-11 70.5 71 52.1
FvH4_5g35300 Fragaria vesca HOM05D002804 ORTHO05D003755 1.7e-10 69.3 71 50.7
FAN08G0149 Fragaria x ananassa HOM05D002804 ORTHO05D029665 1.7e-10 69.3 70 50.0
FvH4_5g35000 Fragaria vesca HOM05D002804 ORTHO05D003755 2.8e-10 68.6 68 51.5
FAN08G1393 Fragaria x ananassa HOM05D002804 ORTHO05D029665 6.3e-10 67.4 71 50.7
RcHm_v2.0_Chr7g0235921 Rosa chinensis HOM05D002804 ORTHO05D003755 6.3e-10 67.4 71 46.5
FAN18G3994 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.2e-10 67.0 70 47.1
RcHm_v2.0_Chr0c11g0499481 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-09 66.6 72 47.2
RcHm_v2.0_Chr7g0236241 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-09 66.6 72 47.2
FvH4_5g35060 Fragaria vesca HOM05D002804 ORTHO05D003755 1.4e-09 66.2 66 51.5
RcHm_v2.0_Chr7g0235871 Rosa chinensis HOM05D002804 ORTHO05D003755 1.4e-09 66.2 71 49.3
RcHm_v2.0_Chr1g0342791 Rosa chinensis HOM05D002804 ORTHO05D003755 3.1e-09 65.1 74 45.9
RcHm_v2.0_Chr7g0218381 Rosa chinensis HOM05D002804 ORTHO05D003755 3.1e-09 65.1 71 45.1
RcHm_v2.0_Chr7g0235971 Rosa chinensis HOM05D002804 ORTHO05D003755 2.6e-08 62.0 76 44.7
RcHm_v2.0_Chr7g0236051 Rosa chinensis HOM05D002804 ORTHO05D003755 2.6e-08 62.0 76 44.7
FAN13G2413 Fragaria x ananassa HOM05D002804 ORTHO05D022637 3.4e-08 61.6 71 46.5
RcHm_v2.0_Chr0c11g0499321 Rosa chinensis HOM05D002804 ORTHO05D029636 3.4e-08 61.6 37 75.7
RcHm_v2.0_Chr7g0236101 Rosa chinensis HOM05D002804 ORTHO05D029636 3.4e-08 61.6 37 75.7
FAN04G1488 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.5e-08 61.2 82 43.9
RcHm_v2.0_Chr7g0236221 Rosa chinensis HOM05D002804 ORTHO05D341151 4.5e-08 61.2 53 54.7
RcHm_v2.0_Chr7g0236331 Rosa chinensis HOM05D002804 ORTHO05D003755 4.5e-08 61.2 82 42.7
FAN18G1408 Fragaria x ananassa HOM05D002804 ORTHO05D022637 5.9e-08 60.8 60 51.7
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 7.7e-08 60.5 71 42.3
FvH4_5g31150 Fragaria vesca HOM05D002804 ORTHO05D022637 1.0e-07 60.1 71 45.1
RcHm_v2.0_Chr7g0235851 Rosa chinensis HOM05D002804 ORTHO05D003755 1.0e-07 60.1 42 71.4
FvH4_5g35254 Fragaria vesca HOM05D002804 ORTHO05D022637 1.7e-07 59.3 60 50.0
FAN04G2366 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-07 59.3 73 45.2
RcHm_v2.0_Chr7g0193131 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-07 59.3 71 43.7
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 2.2e-07 58.9 71 40.8
RcHm_v2.0_Chr7g0236071 Rosa chinensis HOM05D002804 ORTHO05D003755 2.2e-07 58.9 51 60.8
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.9e-07 58.5 71 42.3
MD16G1177800 Malus domestica HOM05D002804 ORTHO05D003755 2.9e-07 58.5 69 42.0
RcHm_v2.0_Chr4g0419921 Rosa chinensis HOM05D002804 ORTHO05D003755 2.9e-07 58.5 82 42.7
RcHm_v2.0_Chr4g0420021 Rosa chinensis HOM05D002804 ORTHO05D003755 2.9e-07 58.5 82 42.7
RcHm_v2.0_Chr7g0235931 Rosa chinensis HOM05D002804 ORTHO05D003755 3.8e-07 58.2 71 42.3
RcHm_v2.0_Chr7g0236591 Rosa chinensis HOM05D002804 ORTHO05D003755 3.8e-07 58.2 82 40.2
FAN18G0121 Fragaria x ananassa HOM05D002804 ORTHO05D029665 5.0e-07 57.8 65 47.7
Peaxi162Scf01065g00002 Petunia axillaris HOM05D002804 ORTHO05D003755 5.0e-07 57.8 71 42.3
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 6.5e-07 57.4 71 38.0
FAN08G1215 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.5e-07 57.0 75 41.3
FAN18G4091 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.5e-07 57.0 45 60.0
Psat6g157320 Pisum sativum HOM05D002804 ORTHO05D003755 1.4e-06 56.2 71 38.0
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 1.9e-06 55.8 71 39.4
Solyc01g102470.2 Solanum lycopersicum HOM05D002804 ORTHO05D003755 1.9e-06 55.8 56 46.4
Sopen01g044910 Solanum pennellii HOM05D002804 ORTHO05D003755 1.9e-06 55.8 56 46.4
FAN02G4619 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.5e-06 55.5 49 55.1
Nitab4.5_0004889g0010 Nicotiana tabacum HOM05D002804 ORTHO05D003755 2.5e-06 55.5 56 46.4
Sed0019381 Sechium edule HOM05D002804 ORTHO05D003755 2.5e-06 55.5 56 53.6
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 3.2e-06 55.1 71 40.8
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 3.2e-06 55.1 71 40.8
FvH4_5g31080 Fragaria vesca HOM05D002804 ORTHO05D003755 4.2e-06 54.7 65 41.5
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 4.2e-06 54.7 71 40.8
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 5.5e-06 54.3 71 38.0
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 5.5e-06 54.3 82 37.8
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.5e-06 54.3 71 40.8
FvH4_5g05670 Fragaria vesca HOM05D002804 ORTHO05D003755 7.2e-06 53.9 63 46.0
FvH4_7g08990 Fragaria vesca HOM05D002804 ORTHO05D003755 7.2e-06 53.9 70 42.9
FAN06G4842 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.2e-06 53.9 70 42.9
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 7.2e-06 53.9 81 37.0
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 7.2e-06 53.9 71 38.0
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 9.4e-06 53.5 71 40.8
RcHm_v2.0_Chr3g0459221 Rosa chinensis HOM05D002804 ORTHO05D003755 9.4e-06 53.5 71 42.3
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 9.4e-06 53.5 71 36.6


User provided reference genes

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