Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 1.8e-84 315.8 155 100.0
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.3e-71 273.1 141 91.5
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 7.0e-65 250.8 155 79.4
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 6.0e-64 247.7 133 91.0
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 3.0e-63 245.4 133 90.2
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 6.6e-63 244.2 155 77.4
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 1.1e-62 243.4 151 75.5
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 1.5e-62 243.0 143 79.0
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 3.3e-62 241.9 155 74.2
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 4.3e-62 241.5 133 88.0
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.1e-61 239.2 129 89.9
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 3.1e-60 235.3 149 72.5
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 4.0e-60 235.0 148 74.3
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 8.9e-60 233.8 150 73.3
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 2.0e-59 232.6 147 72.1
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 9.9e-59 230.3 146 73.3
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 9.9e-59 230.3 149 71.1
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 1.7e-58 229.6 148 72.3
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.9e-58 228.8 140 75.7
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 2.9e-58 228.8 153 70.6
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 8.3e-58 227.3 155 72.3
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 1.4e-57 226.5 155 71.6
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 1.9e-57 226.1 134 73.9
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 3.2e-57 225.3 153 70.6
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 4.1e-57 224.9 155 71.0
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 4.1e-57 224.9 153 69.3
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 4.1e-57 224.9 153 69.3
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 1.6e-56 223.0 136 74.3
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 1.6e-56 223.0 134 73.1
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.1e-56 222.6 140 72.9
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 2.1e-56 222.6 151 68.9
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 2.1e-56 222.6 140 72.9
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 2.7e-56 222.2 148 70.3
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 3.5e-56 221.9 150 70.7
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 3.9e-55 218.4 150 69.3
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 5.1e-55 218.0 145 71.0
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 1.1e-54 216.9 131 74.8
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 2.5e-54 215.7 151 68.9
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 2.5e-54 215.7 138 70.3
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 9.5e-54 213.8 150 66.7
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.2e-53 213.4 155 66.5
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 2.8e-53 212.2 143 69.2
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 3.6e-53 211.8 155 65.2
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 4.7e-53 211.5 147 67.3
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 1.1e-52 210.3 131 71.0
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 1.1e-52 210.3 151 66.9
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 1.8e-52 209.5 155 64.5
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 1.8e-52 209.5 155 65.8
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 1.8e-52 209.5 155 65.8
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 1.8e-52 209.5 155 64.5
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 2.4e-52 209.1 152 65.8
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 3.1e-52 208.8 133 69.2
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 3.1e-52 208.8 137 68.6
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 5.2e-52 208.0 155 63.2
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 5.2e-52 208.0 150 66.0
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 8.9e-52 207.2 155 64.5
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 8.9e-52 207.2 145 65.5
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 8.9e-52 207.2 149 66.4
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 1.2e-51 206.8 150 64.7
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.5e-51 206.5 151 63.6
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 2.0e-51 206.1 151 64.2
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.6e-51 205.7 155 63.9
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 7.6e-51 204.1 132 69.7
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 9.9e-51 203.8 131 67.9
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 1.3e-50 203.4 147 66.0
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 3.8e-50 201.8 131 69.5
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 1.4e-49 199.9 151 62.3
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.9e-49 199.5 133 68.4
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 2.4e-49 199.1 152 61.8
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 2.4e-49 199.1 152 61.8
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 3.2e-49 198.7 152 61.8
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 5.4e-49 198.0 168 57.7
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 5.4e-49 198.0 131 70.2
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 7.1e-49 197.6 131 68.7
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 9.2e-49 197.2 130 67.7
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 1.2e-48 196.8 134 66.4
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 1.6e-48 196.4 155 61.9
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 2.1e-48 196.1 151 63.6
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 2.1e-48 196.1 151 63.6
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 2.1e-48 196.1 151 63.6
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 2.1e-48 196.1 130 66.9
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 2.7e-48 195.7 224 49.6
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 3.5e-48 195.3 134 65.7
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 4.6e-48 194.9 136 67.6
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 4.6e-48 194.9 150 65.3
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 6.0e-48 194.5 152 64.5
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 6.0e-48 194.5 129 66.7
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 7.8e-48 194.1 137 67.2
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 1.0e-47 193.7 136 64.0
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 6.6e-47 191.0 155 60.0
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 6.6e-47 191.0 155 60.0
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 6.6e-47 191.0 155 60.0
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 8.7e-47 190.7 121 72.7
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 8.7e-47 190.7 149 61.1
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 1.9e-46 189.5 130 65.4
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 7.3e-46 187.6 132 66.7
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 2.1e-45 186.0 138 64.5
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 3.6e-45 185.3 143 60.1
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 4.8e-45 184.9 151 58.9
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 8.1e-45 184.1 150 59.3
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 2.4e-44 182.6 121 68.6
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 1.2e-43 180.3 137 67.9
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.2e-43 180.3 146 61.0
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 2.0e-43 179.5 135 59.3
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 2.0e-43 179.5 135 59.3
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 5.8e-43 177.9 143 58.0
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 4.9e-42 174.9 121 64.5
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 6.4e-42 174.5 131 58.8
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 2.4e-41 172.6 113 69.0
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 2.1e-40 169.5 143 53.8
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.0e-39 167.2 151 50.3
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 1.3e-39 166.8 143 55.2
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.5e-38 163.3 151 49.7
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 1.9e-38 162.9 217 41.9
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 4.3e-38 161.8 126 64.3
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 2.4e-36 156.0 86 89.5
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 3.8e-34 148.7 135 56.3
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 2.1e-32 142.9 130 55.4
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 6.0e-32 141.4 102 68.6
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 7.9e-32 141.0 137 48.2
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 1.0e-31 140.6 133 49.6
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 1.3e-31 140.2 133 48.9
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 1.3e-29 133.7 135 45.2
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 2.4e-28 129.4 89 71.9
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 3.1e-28 129.0 122 51.6
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 5.3e-28 128.3 122 51.6
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 2.0e-27 126.3 122 50.8
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 4.5e-27 125.2 81 74.1
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 1.7e-26 123.2 96 63.5
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 5.5e-25 118.2 84 63.1
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 2.1e-24 116.3 109 50.5
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 6.7e-23 111.3 132 42.4
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 5.7e-22 108.2 136 39.0
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 7.4e-22 107.8 130 43.1
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 3.7e-21 105.5 95 51.6
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 5.3e-20 101.7 162 37.0
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 1.3e-18 97.1 89 55.1
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 1.3e-15 87.0 132 32.6
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 1.9e-14 83.2 132 29.5
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 4.3e-14 82.0 64 57.8
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 9.7e-14 80.9 105 38.1
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 8.2e-13 77.8 59 55.9
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.1e-12 77.4 59 55.9
FAN11G1746 Fragaria x ananassa HOM05D005008 ORTHO05D207435 3.2e-09 65.9 35 82.9
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 6.7e-07 58.2 57 49.1
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 3.3e-06 55.8 36 72.2


User provided reference genes

Program Settings