Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0229511 Rosa chinensis HOM05D000252 ORTHO05D006173 3.8e-79 298.1 154 100.0
RcHm_v2.0_Chr7g0229671 Rosa chinensis HOM05D001214 ORTHO05D006173 3.0e-39 165.6 90 96.7
RcHm_v2.0_Chr7g0230161 Rosa chinensis HOM05D000252 ORTHO05D006173 1.2e-35 153.7 89 92.1
FvH4_6g28040 Fragaria vesca HOM05D000252 ORTHO05D006173 1.4e-33 146.7 105 78.1
FAN14G4665 Fragaria x ananassa HOM05D000252 ORTHO05D006173 1.4e-33 146.7 105 78.1
FAN09G0108 Fragaria x ananassa HOM05D000252 ORTHO05D006173 5.4e-33 144.8 105 77.1
RcHm_v2.0_Chr2g0131741 Rosa chinensis HOM05D000252 ORTHO05D006173 3.5e-32 142.1 105 78.1
RcHm_v2.0_Chr5g0041951 Rosa chinensis HOM05D001077 ORTHO05D006173 3.9e-31 138.7 105 76.2
RcHm_v2.0_Chr6g0247031 Rosa chinensis HOM05D000252 ORTHO05D006173 3.9e-31 138.7 105 76.2
Prupe.8G264400 Prunus persica HOM05D000252 ORTHO05D006173 7.6e-27 124.4 105 69.5
FAN02G2190 Fragaria x ananassa HOM05D000479 ORTHO05D017027 5.4e-25 118.2 100 70.0
FAN05G2628 Fragaria x ananassa HOM05D001214 ORTHO05D006173 2.1e-24 116.3 85 76.5
Thecc.04G309700 Theobroma cacao HOM05D000252 ORTHO05D006173 2.1e-24 116.3 107 62.6
FAN05G1823 Fragaria x ananassa HOM05D000479 ORTHO05D017027 1.0e-23 114.0 100 68.0
CSS0014928 Camellia sinensis var. sinensis HOM05D000252 ORTHO05D006173 1.9e-22 109.8 100 62.0
Cfa010656 Carpinus fangiana HOM05D000252 ORTHO05D006173 1.9e-22 109.8 100 64.0
Gorai.005G070800 Gossypium raimondii HOM05D000252 ORTHO05D006173 1.9e-22 109.8 105 57.1
MD15G1141600 Malus domestica HOM05D000252 ORTHO05D006173 2.5e-22 109.4 98 63.3
Sed0023253 Sechium edule HOM05D000252 ORTHO05D006173 7.3e-22 107.8 100 61.0
Gohir.D02G062900 Gossypium hirsutum HOM05D000252 ORTHO05D006173 9.6e-22 107.5 105 56.2
PGSC0003DMG400008940 Solanum tuberosum HOM05D000252 ORTHO05D006173 1.3e-21 107.1 100 61.0
Ciclev10001762m.g Citrus clementina HOM05D000252 ORTHO05D006173 2.1e-21 106.3 100 59.0
Lj2C148T2 Lonicera japonica HOM05D000252 ORTHO05D006173 2.1e-21 106.3 100 60.0
CiPaw.11G106500 Carya illinoinensis HOM05D000252 ORTHO05D006173 2.8e-21 105.9 101 58.4
GSVIVG01035561001 Vitis vinifera HOM05D000252 ORTHO05D006173 2.8e-21 105.9 106 56.6
Solyc09g010150.4 Solanum lycopersicum HOM05D000252 ORTHO05D006173 4.8e-21 105.1 100 61.0
EL10Ac7g17138 Beta vulgaris HOM05D000252 ORTHO05D006173 6.2e-21 104.8 104 54.8
CAN.G397.84 Capsicum annuum HOM05D000252 ORTHO05D006173 6.2e-21 104.8 100 60.0
Sopen09g004890 Solanum pennellii HOM05D000252 ORTHO05D006173 6.2e-21 104.8 100 60.0
Nitab4.5_0000573g0180 Nicotiana tabacum HOM05D000252 ORTHO05D006173 1.8e-20 103.2 100 59.0
PSO566G0118 Papaver somniferum HOM05D000252 ORTHO05D006173 2.4e-20 102.8 97 58.8
Atru.chr9.1817 Acer truncatum HOM05D000252 ORTHO05D006173 4.0e-20 102.1 98 57.1
CANSAT01G0545 Cannabis sativa HOM05D000252 ORTHO05D006173 4.0e-20 102.1 101 59.4
Peaxi162Scf00069g00511 Petunia axillaris HOM05D000252 ORTHO05D006173 4.0e-20 102.1 100 57.0
Potri.001G453500 Populus trichocarpa HOM05D000252 ORTHO05D006173 5.3e-20 101.7 102 56.9
TWI81G1050 Tripterygium wilfordii HOM05D000252 ORTHO05D006173 9.0e-20 100.9 102 58.8
Rhsim02G0119800 Rhododendron simsii HOM05D000252 ORTHO05D006173 1.2e-19 100.5 100 58.0
vmacro00029 Vaccinium macrocarpon HOM05D000252 ORTHO05D006173 1.2e-19 100.5 101 56.4
PSO782G5386 Papaver somniferum HOM05D000252 ORTHO05D006173 1.5e-19 100.1 97 56.7
Peaxi162Scf01205g00153 Petunia axillaris HOM05D000252 ORTHO05D006173 2.0e-19 99.8 100 56.0
Oeu021515.1 Olea europaea HOM05D000252 ORTHO05D006173 7.6e-19 97.8 101 56.4
Cpa.g.sc87.4 Carica papaya HOM05D000252 ORTHO05D006173 9.9e-19 97.4 108 52.8
Cc09_g09590 Coffea canephora HOM05D000252 ORTHO05D006173 9.9e-19 97.4 100 57.0
CsaV3_5G018710 Cucumis sativus L. HOM05D000252 ORTHO05D006173 9.9e-19 97.4 100 55.0
Eucgr.E01120 Eucalyptus grandis HOM05D000252 ORTHO05D006173 9.9e-19 97.4 103 54.4
Sabra16G0306700 Salix brachista HOM05D000252 ORTHO05D006173 9.9e-19 97.4 101 55.4
Sed0009717 Sechium edule HOM05D000252 ORTHO05D006173 9.9e-19 97.4 100 56.0
ClCG01G007270 Citrullus lanatus HOM05D000252 ORTHO05D006173 1.3e-18 97.1 100 56.0
TAR629G1221 Trochodendron aralioides HOM05D000252 ORTHO05D006173 1.7e-18 96.7 100 56.0
Eucgr.E01111 Eucalyptus grandis HOM05D000252 ORTHO05D006173 2.2e-18 96.3 103 53.4
TAR622G0972 Trochodendron aralioides HOM05D000252 ORTHO05D006173 2.2e-18 96.3 100 56.0
Lsat_1_v5_gn_5_112420 Lactuca sativa HOM05D000252 ORTHO05D006173 3.8e-18 95.5 101 50.5
Actinidia25893 Actinidia chinensis HOM05D000252 ORTHO05D006173 4.9e-18 95.1 100 55.0
AUR62006449 Chenopodium quinoa HOM05D000252 ORTHO05D006173 4.9e-18 95.1 101 54.5
AUR62029802 Chenopodium quinoa HOM05D000252 ORTHO05D006173 4.9e-18 95.1 104 54.8
AUR62026982 Chenopodium quinoa HOM05D000252 ORTHO05D006173 6.4e-18 94.7 101 54.5
ECA246G4804 Erigeron canadensis HOM05D001361 ORTHO05D006173 8.4e-18 94.4 119 47.1
MSTRG.14758 Avicennia marina HOM05D000252 ORTHO05D006173 1.1e-17 94.0 95 55.8
Sc02g0006460 Simmondsia chinensis HOM05D000252 ORTHO05D006173 1.9e-17 93.2 101 52.5
Sc02g0006450 Simmondsia chinensis HOM05D000252 ORTHO05D006173 2.4e-17 92.8 101 51.5
Manes.01G013300 Manihot esculenta HOM05D000252 ORTHO05D006173 4.2e-17 92.0 94 56.4
QL07p028735 Quercus lobata HOM05D000252 ORTHO05D006173 4.2e-17 92.0 142 46.5
HanXRQChr06g0172631 Helianthus annuus HOM05D000252 ORTHO05D006173 7.1e-17 91.3 102 52.0
Nn2g15901 Nelumbo nucifera HOM05D000252 ORTHO05D006173 9.3e-17 90.9 100 52.0
Ah.08g209090 Amaranthus hybridus HOM05D000252 ORTHO05D006173 1.2e-16 90.5 102 54.9
ATR0824G073 Amborella trichopoda HOM05D000252 ORTHO05D006173 1.2e-16 90.5 99 48.5
THA.LOC104816406 Tarenaya hassleriana HOM05D000252 ORTHO05D006173 1.2e-16 90.5 100 50.0
Migut.H01382 Erythranthe guttata HOM05D000252 ORTHO05D006173 1.6e-16 90.1 91 56.0
MBI04_g45215_MAGBIO Magnolia biondii HOM05D000252 ORTHO05D006173 1.6e-16 90.1 100 51.0
Zm00001eb310490 Zea mays HOM05D000252 ORTHO05D006173 1.6e-16 90.1 94 55.3
Aqoxy2G02648 Aquilegia oxysepala HOM05D000252 ORTHO05D006173 2.7e-16 89.4 90 54.4
HPP92_005571 Vanilla planifolia HOM05D000252 ORTHO05D006173 6.0e-16 88.2 94 57.4
Carub.0006s1413 Capsella rubella HOM05D000252 ORTHO05D006173 1.0e-15 87.4 100 48.0
AT5G15940 Arabidopsis thaliana HOM05D000252 ORTHO05D006173 2.3e-15 86.3 94 51.1
Os09g0346600 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D006173 3.9e-15 85.5 102 50.0
Eucgr.L01276 Eucalyptus grandis HOM05D000252 ORTHO05D006173 5.1e-15 85.1 72 61.1
Lalb_Chr23g0271541 Lupinus albus HOM05D000252 ORTHO05D006173 5.1e-15 85.1 98 49.0
VMungo1309G0630 Vigna mungo HOM05D000252 ORTHO05D006173 1.5e-14 83.6 86 52.3
Glyma.04G237500 Glycine max HOM05D000252 ORTHO05D006173 3.3e-14 82.4 86 54.7
Medtr3g009190 Medicago truncatula HOM05D000252 ORTHO05D006173 3.3e-14 82.4 86 55.8
Medtr6g453040 Medicago truncatula HOM05D000252 ORTHO05D006173 3.3e-14 82.4 86 55.8
Lj1g0001797 Lotus japonicus HOM05D000252 ORTHO05D006173 4.3e-14 82.0 86 54.7
arahy.Tifrunner.gnm1.ann1.VK1FTJ Arachis hypogaea HOM05D000252 ORTHO05D006173 5.6e-14 81.6 88 55.7
CARHR197370 Cardamine hirsuta HOM05D000252 ORTHO05D006173 5.6e-14 81.6 93 49.5
COL.COLO4_34295 Corchorus olitorius HOM05D000252 ORTHO05D006173 5.6e-14 81.6 94 51.1
arahy.Tifrunner.gnm1.ann1.32U02B Arachis hypogaea HOM05D000252 ORTHO05D006173 9.6e-14 80.9 98 50.0
arahy.Tifrunner.gnm1.ann1.6GL1RL Arachis hypogaea HOM05D000252 ORTHO05D006173 9.6e-14 80.9 98 50.0
Thhalv10013899m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 9.6e-14 80.9 93 49.5
Sc02g0006480 Simmondsia chinensis HOM05D000252 ORTHO05D006173 9.6e-14 80.9 81 55.6
Sp6g28170 Schrenkiella parvula HOM05D000252 ORTHO05D006173 1.3e-13 80.5 107 43.0
CARHR209200 Cardamine hirsuta HOM05D000252 ORTHO05D006173 1.6e-13 80.1 96 49.0
BcaNung02217 Brassica carinata HOM05D000252 ORTHO05D006173 2.8e-13 79.3 93 49.5
QL93p2012_0022 Quercus lobata HOM05D000252 ORTHO05D006173 2.8e-13 79.3 76 55.3
AL6G13700 Arabidopsis lyrata HOM05D000252 ORTHO05D006173 4.8e-13 78.6 93 49.5
BraA10t45249Z Brassica rapa HOM05D000252 ORTHO05D006173 4.8e-13 78.6 93 49.5
Glyma.06G126500 Glycine max HOM05D000252 ORTHO05D006173 4.8e-13 78.6 86 52.3
Phvul.009G054600 Phaseolus vulgaris HOM05D000252 ORTHO05D006173 4.8e-13 78.6 86 48.8
C09p72770 Brassica napus HOM05D000087 ORTHO05D006949 6.2e-13 78.2 93 49.5
BolC9t60015H Brassica oleracea HOM05D000087 ORTHO05D006949 6.2e-13 78.2 93 49.5
Thhalv10007998m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 6.2e-13 78.2 93 50.5
BcaC03g18461 Brassica carinata HOM05D000252 ORTHO05D006173 8.1e-13 77.8 93 48.4
BcaNung02216 Brassica carinata HOM05D000252 ORTHO05D006173 8.1e-13 77.8 91 47.3
Thhalv10013855m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 1.1e-12 77.4 93 47.3
AL6G26820 Arabidopsis lyrata HOM05D000252 ORTHO05D006173 1.8e-12 76.6 94 46.8
A10p32050 Brassica napus HOM05D000087 ORTHO05D006949 3.1e-12 75.9 93 48.4
BraA02t05302Z Brassica rapa HOM05D000252 ORTHO05D006173 3.1e-12 75.9 93 48.4
SEGI_02143 Sequoiadendron giganteum HOM05D000252 ORTHO05D006173 4.0e-12 75.5 88 47.7
Carub.0006s0303 Capsella rubella HOM05D000252 ORTHO05D006173 5.3e-12 75.1 93 49.5
Medtr3g091070 Medicago truncatula HOM05D000252 ORTHO05D006173 5.3e-12 75.1 83 53.0
A02p03310 Brassica napus HOM05D005209 ORTHO05D006188 9.0e-12 74.3 93 47.3
C02p08070 Brassica napus HOM05D005209 ORTHO05D006188 9.0e-12 74.3 93 47.3
BolC2t06729H Brassica oleracea HOM05D005209 ORTHO05D006188 9.0e-12 74.3 93 47.3
Aa31LG11G13660 Aethionema arabicum HOM05D000252 ORTHO05D006173 1.2e-11 73.9 92 45.7
RcHm_v2.0_Chr7g0229791 Rosa chinensis HOM05D000252 ORTHO05D006173 2.0e-11 73.2 62 67.7
BcaC06g32112 Brassica carinata HOM05D000252 ORTHO05D006173 4.5e-11 72.0 72 54.2
AT5G04070 Arabidopsis thaliana HOM05D000252 ORTHO05D006173 7.6e-11 71.2 93 48.4
unitig_61.g26060 Utricularia gibba HOM05D000252 ORTHO05D006173 1.3e-10 70.5 95 48.4
SMO259G0014 Selaginella moellendorffii HOM05D000252 ORTHO05D006173 1.7e-10 70.1 133 40.6
Sp6g38670 Schrenkiella parvula HOM05D000252 ORTHO05D006173 2.9e-10 69.3 93 48.4
Ca_16687_v3 Cicer arietinum L. HOM05D000252 ORTHO05D006173 3.8e-10 68.9 86 47.7
Mapoly0004s0285 Marchantia polymorpha HOM05D000252 ORTHO05D006173 8.4e-10 67.8 88 44.3
Aa31LG1G21250 Aethionema arabicum HOM05D000252 ORTHO05D006173 1.1e-09 67.4 95 46.3
AagrBONN_evm.TU.Sc2ySwM_228.404 Anthoceros agrestis HOM05D000252 ORTHO05D006173 6.0e-08 61.6 85 45.9
CBR_g24314 Chara braunii HOM05D000252 ORTHO05D006173 6.7e-07 58.2 89 38.2
Haze_06490 Corylus avellana HOM05D000252 ORTHO05D006173 4.3e-06 55.5 82 48.8


User provided reference genes

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