Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0229441 Rosa chinensis HOM05D005764 ORTHO05D006600 6.2e-67 257.7 166 100.0
RcHm_v2.0_Chr7g0188811 Rosa chinensis HOM05D005764 ORTHO05D006600 2.5e-28 129.4 107 63.6
FAN18G2453 Fragaria x ananassa HOM05D005764 ORTHO05D006600 2.0e-25 119.8 106 60.4
FvH4_5g09340 Fragaria vesca HOM05D005764 ORTHO05D006600 3.4e-25 119.0 106 60.4
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 3.3e-20 102.4 147 38.8
Prupe.5G142900 Prunus persica HOM05D005764 ORTHO05D006600 2.2e-19 99.8 106 50.9
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 4.1e-18 95.5 106 50.9
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 9.0e-18 94.4 106 50.0
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 1.4e-15 87.0 106 45.3
Actinidia25528 Actinidia chinensis HOM05D005764 ORTHO05D006600 2.5e-15 86.3 106 46.2
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 2.5e-15 86.3 123 39.0
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 2.5e-15 86.3 123 39.0
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 2.5e-15 86.3 106 40.6
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 5.5e-15 85.1 106 45.3
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 5.5e-15 85.1 106 44.3
CiPaw.11G052700 Carya illinoinensis HOM05D005764 ORTHO05D006600 1.6e-14 83.6 104 46.2
EL10Ac5g11299 Beta vulgaris HOM05D005764 ORTHO05D006600 2.1e-14 83.2 103 43.7
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 2.7e-14 82.8 107 40.2
ClCG02G014020 Citrullus lanatus HOM05D005764 ORTHO05D006600 4.6e-14 82.0 107 43.0
Sed0013038 Sechium edule HOM05D005764 ORTHO05D006600 4.6e-14 82.0 107 41.1
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 7.9e-14 81.3 106 42.5
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 7.9e-14 81.3 106 39.6
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 1.0e-13 80.9 89 48.3
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 1.4e-13 80.5 106 43.4
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 1.4e-13 80.5 106 42.5
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 1.8e-13 80.1 105 37.1
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 1.8e-13 80.1 106 38.7
QL11p027136 Quercus lobata HOM05D005764 ORTHO05D006600 2.3e-13 79.7 104 43.3
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 2.3e-13 79.7 106 38.7
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 3.0e-13 79.3 106 41.5
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 3.9e-13 79.0 107 41.1
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 5.1e-13 78.6 106 40.6
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 6.7e-13 78.2 106 39.6
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 6.7e-13 78.2 106 41.5
Gorai.003G116400 Gossypium raimondii HOM05D005764 ORTHO05D006600 8.8e-13 77.8 99 42.4
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 1.1e-12 77.4 103 41.7
Lj1A1039T30 Lonicera japonica HOM05D005764 ORTHO05D006600 1.5e-12 77.0 106 42.5
Thecc.03G139200 Theobroma cacao HOM05D005764 ORTHO05D006600 2.5e-12 76.3 105 41.9
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 4.3e-12 75.5 106 37.7
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 9.7e-12 74.3 106 41.5
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 1.3e-11 73.9 105 40.0
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 2.2e-11 73.2 103 40.8
Atru.chr6.3404 Acer truncatum HOM05D005764 ORTHO05D006600 2.8e-11 72.8 100 44.0
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 2.8e-11 72.8 103 39.8
AT5G61990 Arabidopsis thaliana HOM05D005764 ORTHO05D006600 4.8e-11 72.0 152 32.2
AUR62034761 Chenopodium quinoa HOM05D005764 ORTHO05D006600 6.3e-11 71.6 84 45.2
AUR62041690 Chenopodium quinoa HOM05D005764 ORTHO05D006600 6.3e-11 71.6 84 45.2
Oeu005567.3 Olea europaea HOM05D005764 ORTHO05D006600 6.3e-11 71.6 161 33.5
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 8.2e-11 71.2 105 41.9
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 8.2e-11 71.2 103 41.7
DCAR_016460 Daucus carota HOM05D005764 ORTHO05D006600 1.1e-10 70.9 107 38.3
SGA_v2.0_scaffold74G24732 Striga asiatica HOM05D005764 ORTHO05D006600 1.4e-10 70.5 107 40.2
Potri.015G105400 Populus trichocarpa HOM05D005764 ORTHO05D006600 2.4e-10 69.7 106 37.7
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 2.4e-10 69.7 105 37.1
Atru.chr6.1906 Acer truncatum HOM05D005764 ORTHO05D006600 9.1e-10 67.8 106 43.4
AUR62009526 Chenopodium quinoa HOM05D005764 ORTHO05D006600 1.2e-09 67.4 84 44.0
Ciclev10033858m.g Citrus clementina HOM05D005764 ORTHO05D006600 1.2e-09 67.4 84 45.2
Sc04g0000230 Simmondsia chinensis HOM05D005764 ORTHO05D006600 1.5e-09 67.0 105 35.2
ATR0317G130 Amborella trichopoda HOM05D005764 ORTHO05D006600 3.4e-09 65.9 106 33.0
TAR633G1425 Trochodendron aralioides HOM05D005764 ORTHO05D006600 5.9e-09 65.1 83 41.0
Ciclev10014235m.g Citrus clementina HOM05D005764 ORTHO05D006600 7.7e-09 64.7 106 35.8
Thecc.01G197100 Theobroma cacao HOM05D005764 ORTHO05D006600 7.7e-09 64.7 119 33.6
CDE02G2785 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 1.0e-08 64.3 89 37.1
Cfa014216 Carpinus fangiana HOM05D005764 ORTHO05D006600 1.7e-08 63.5 105 38.1
Eucgr.K02196 Eucalyptus grandis HOM05D005764 ORTHO05D006600 1.7e-08 63.5 56 53.6
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.7e-08 63.5 163 30.1
Aqoxy7G02956 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 2.2e-08 63.2 103 38.8
Haze_12606 Corylus avellana HOM05D005764 ORTHO05D006600 2.9e-08 62.8 105 38.1
Haze_12617 Corylus avellana HOM05D005764 ORTHO05D006600 2.9e-08 62.8 105 38.1
ATR0317G133 Amborella trichopoda HOM05D005764 ORTHO05D006600 3.8e-08 62.4 106 33.0
vmacro19173 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 3.8e-08 62.4 98 34.7
Gohir.A03G056500 Gossypium hirsutum HOM05D005764 ORTHO05D006600 5.0e-08 62.0 63 46.0
Dinv13731 Davidia involucrata HOM05D005764 ORTHO05D006600 6.5e-08 61.6 106 38.7
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 6.5e-08 61.6 99 37.4
CAN.G177.15 Capsicum annuum HOM05D005764 ORTHO05D006600 8.5e-08 61.2 101 31.7
BcaB02g09611 Brassica carinata HOM05D005764 ORTHO05D006600 1.1e-07 60.8 138 29.0
PGSC0003DMG400017401 Solanum tuberosum HOM05D005764 ORTHO05D006600 1.4e-07 60.5 106 35.8
Actinidia09797 Actinidia chinensis HOM05D005764 ORTHO05D006600 2.5e-07 59.7 91 37.4
CSS0031853 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 3.2e-07 59.3 105 34.3
CSS0045653 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 3.2e-07 59.3 105 34.3
Nitab4.5_0005425g0010 Nicotiana tabacum HOM05D005764 ORTHO05D006600 4.2e-07 58.9 93 33.3
Rhsim06G0177300 Rhododendron simsii HOM05D005764 ORTHO05D006600 5.5e-07 58.5 108 36.1
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 5.5e-07 58.5 105 30.5
Cfa010641 Carpinus fangiana HOM05D064493 ORTHO05D021219 1.2e-06 57.4 42 59.5
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 1.2e-06 57.4 105 32.4
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 2.1e-06 56.6 103 35.9
HanXRQChr16g0498891 Helianthus annuus HOM05D005764 ORTHO05D006600 2.1e-06 56.6 92 37.0
Lsat_1_v5_gn_2_68461 Lactuca sativa HOM05D007545 ORTHO05D009579 2.1e-06 56.6 94 30.9
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 2.1e-06 56.6 104 31.7
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 2.1e-06 56.6 104 30.8
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 2.7e-06 56.2 104 31.7
Duzib205G1181 Durio zibethinus HOM05D005764 ORTHO05D006600 3.6e-06 55.8 63 44.4
ECA232G3323 Erigeron canadensis HOM05D005764 ORTHO05D006600 3.6e-06 55.8 100 32.0
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 3.6e-06 55.8 104 30.8
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 4.7e-06 55.5 104 31.7
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 4.7e-06 55.5 107 29.9
Thhalv10005336m.g Eutrema salsugineum HOM05D007763 ORTHO05D009537 6.1e-06 55.1 105 34.3
GSVIVG01031674001 Vitis vinifera HOM05D000104 ORTHO05D009920 6.1e-06 55.1 104 30.8
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 7.9e-06 54.7 104 29.8
Sabra12G0078500 Salix brachista HOM05D005764 ORTHO05D006600 7.9e-06 54.7 43 58.1
HPP92_001923 Vanilla planifolia HOM05D007455 ORTHO05D009431 7.9e-06 54.7 106 28.3


User provided reference genes

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