Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 1.8e-48 195.7 101 100.0
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 2.7e-33 145.2 95 85.3
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.9e-32 141.4 95 83.2
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 2.8e-30 135.2 79 89.9
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 4.1e-29 131.3 87 83.9
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 1.2e-28 129.8 79 86.1
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.4e-28 128.3 88 81.8
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 9.4e-26 120.2 107 67.3
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 7.9e-25 117.1 108 63.9
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 6.7e-24 114.0 107 63.6
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 1.5e-23 112.8 98 65.3
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 1.3e-22 109.8 98 62.2
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 1.3e-22 109.8 98 62.2
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 2.0e-20 102.4 108 53.7
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 2.6e-20 102.1 96 56.2
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 2.6e-20 102.1 102 57.8
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 2.6e-20 102.1 95 57.9
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 3.4e-20 101.7 75 68.0
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.0e-19 100.1 99 58.6
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 2.2e-19 99.0 101 54.5
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 5.0e-19 97.8 104 51.0
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 6.5e-19 97.4 103 54.4
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 6.5e-19 97.4 75 66.7
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 6.5e-19 97.4 71 66.2
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 6.5e-19 97.4 99 54.5
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.9e-18 95.9 101 53.5
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 5.5e-18 94.4 91 59.3
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 7.2e-18 94.0 109 50.5
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 7.2e-18 94.0 89 59.6
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 7.2e-18 94.0 97 51.5
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 9.4e-18 93.6 70 64.3
RcHm_v2.0_Chr7g0230041 Rosa chinensis HOM05D004289 ORTHO05D005141 1.2e-17 93.2 63 76.2
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 2.1e-17 92.4 108 48.1
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.1e-17 92.4 109 49.5
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 4.7e-17 91.3 101 50.5
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 4.7e-17 91.3 98 49.0
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 6.1e-17 90.9 88 52.3
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 6.1e-17 90.9 93 55.9
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 7.9e-17 90.5 105 49.5
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 7.9e-17 90.5 110 49.1
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 7.9e-17 90.5 87 55.2
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.0e-16 90.1 99 48.5
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 1.0e-16 90.1 99 52.5
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 1.0e-16 90.1 94 53.2
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.4e-16 89.7 104 51.0
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 3.0e-16 88.6 95 51.6
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 3.0e-16 88.6 88 55.7
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.9e-16 88.2 100 49.0
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 3.9e-16 88.2 89 55.1
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 5.1e-16 87.8 95 53.7
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 5.1e-16 87.8 104 48.1
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 6.7e-16 87.4 93 53.8
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 6.7e-16 87.4 99 47.5
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 6.7e-16 87.4 96 53.1
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 6.7e-16 87.4 89 59.6
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.1e-15 86.7 111 46.8
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 1.1e-15 86.7 77 59.7
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 1.1e-15 86.7 106 49.1
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.5e-15 86.3 97 52.6
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.5e-15 86.3 89 55.1
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 2.0e-15 85.9 90 53.3
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.0e-15 85.9 92 50.0
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 2.0e-15 85.9 92 50.0
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 2.0e-15 85.9 91 56.0
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 2.0e-15 85.9 95 47.4
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 2.6e-15 85.5 78 61.5
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 2.6e-15 85.5 99 52.5
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 3.3e-15 85.1 73 60.3
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 3.3e-15 85.1 73 60.3
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 4.4e-15 84.7 93 48.4
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 4.4e-15 84.7 103 46.6
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 5.7e-15 84.3 72 58.3
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 5.7e-15 84.3 73 57.5
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 5.7e-15 84.3 72 58.3
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 5.7e-15 84.3 102 48.0
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 5.7e-15 84.3 73 57.5
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 7.4e-15 84.0 54 75.9
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 7.4e-15 84.0 90 54.4
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 9.7e-15 83.6 71 54.9
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 9.7e-15 83.6 96 50.0
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 9.7e-15 83.6 93 52.7
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.3e-14 83.2 73 57.5
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 1.3e-14 83.2 73 57.5
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.3e-14 83.2 73 57.5
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.3e-14 83.2 67 65.7
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 1.3e-14 83.2 98 45.9
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.3e-14 83.2 91 49.5
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.3e-14 83.2 73 56.2
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.7e-14 82.8 96 49.0
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 2.2e-14 82.4 100 47.0
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 2.2e-14 82.4 93 48.4
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.2e-14 82.4 64 59.4
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 2.8e-14 82.0 99 49.5
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.8e-14 82.0 74 56.8
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 6.3e-14 80.9 88 53.4
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 8.2e-14 80.5 94 50.0
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 8.2e-14 80.5 99 47.5
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 1.1e-13 80.1 102 44.1
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 1.4e-13 79.7 73 54.8
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 1.4e-13 79.7 73 54.8
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 1.4e-13 79.7 73 54.8
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.4e-13 79.7 98 46.9
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 1.4e-13 79.7 94 50.0
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 1.8e-13 79.3 57 71.9
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 1.8e-13 79.3 92 48.9
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 2.4e-13 79.0 97 46.4
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 3.1e-13 78.6 62 59.7
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 5.3e-13 77.8 99 45.5
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 5.3e-13 77.8 87 54.0
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 5.3e-13 77.8 93 45.2
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 5.3e-13 77.8 93 45.2
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 1.2e-12 76.6 105 43.8
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 2.6e-12 75.5 96 45.8
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 3.5e-12 75.1 93 45.2
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 3.5e-12 75.1 99 47.5
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 3.5e-12 75.1 76 51.3
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 4.5e-12 74.7 75 50.7
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 5.9e-12 74.3 96 44.8
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 5.9e-12 74.3 97 45.4
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 7.7e-12 73.9 62 61.3
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.0e-11 73.6 85 52.9
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 1.0e-11 73.6 93 43.0
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.3e-11 73.2 65 55.4
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 1.7e-11 72.8 97 42.3
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 1.7e-11 72.8 92 47.8
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 1.7e-11 72.8 97 48.5
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 2.2e-11 72.4 85 43.5
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 3.8e-11 71.6 70 48.6
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 5.0e-11 71.2 96 43.8
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 6.5e-11 70.9 88 44.3
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 8.5e-11 70.5 65 56.9
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.1e-10 70.1 44 72.7
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 2.5e-10 68.9 75 49.3
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.5e-10 68.9 65 43.1
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 3.2e-10 68.6 75 45.3
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 5.5e-10 67.8 92 43.5
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 9.4e-10 67.0 35 85.7
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 3.6e-09 65.1 36 83.3
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 4.7e-09 64.7 37 78.4
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 6.1e-09 64.3 93 43.0
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 1.8e-08 62.8 94 43.6
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 1.8e-08 62.8 72 41.7
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 8.8e-08 60.5 40 65.0
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 8.8e-08 60.5 40 65.0
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 8.8e-08 60.5 40 65.0
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.1e-07 60.1 32 84.4
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 1.5e-07 59.7 61 59.0
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 1.5e-07 59.7 53 50.9
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.0e-07 59.3 87 39.1
FAN08G1828 Fragaria x ananassa HOM05D004289 ORTHO05D206118 3.3e-07 58.5 27 100.0
QL11p051756 Quercus lobata HOM05D004289 ORTHO05D005141 5.7e-07 57.8 74 48.6
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 1.3e-06 56.6 75 40.0
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 1.3e-06 56.6 75 40.0
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 1.3e-06 56.6 75 40.0
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 1.7e-06 56.2 72 40.3
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 2.2e-06 55.8 72 44.4
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.2e-06 55.8 70 41.4
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 2.2e-06 55.8 75 41.3
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 2.8e-06 55.5 76 44.7
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 2.8e-06 55.5 78 37.2
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 2.8e-06 55.5 61 54.1
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 3.7e-06 55.1 73 43.8
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 4.8e-06 54.7 77 37.7
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 4.8e-06 54.7 70 41.4
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 4.8e-06 54.7 67 44.8
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 6.3e-06 54.3 64 43.8
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 6.3e-06 54.3 75 40.0
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 6.3e-06 54.3 74 43.2
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 6.3e-06 54.3 79 39.2
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 6.3e-06 54.3 89 39.3
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 8.2e-06 53.9 100 39.0
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 8.2e-06 53.9 72 37.5
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 8.2e-06 53.9 68 42.6


User provided reference genes

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