Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 4.7e-25 117.1 60 100.0
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 1.7e-11 72.0 46 76.1
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.9e-10 68.6 69 56.5
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.9e-10 68.6 69 56.5
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.9e-10 68.6 69 56.5
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 3.3e-10 67.8 40 80.0
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 7.3e-10 66.6 69 50.7
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 2.1e-09 65.1 40 75.0
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 2.1e-09 65.1 40 75.0
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 2.1e-09 65.1 40 75.0
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 2.1e-09 65.1 40 75.0
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 2.1e-09 65.1 40 72.5
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.1e-09 65.1 40 75.0
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.1e-09 65.1 40 75.0
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.1e-09 65.1 40 75.0
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 2.1e-09 65.1 40 75.0
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 2.1e-09 65.1 40 75.0
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 2.1e-09 65.1 40 75.0
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 2.1e-09 65.1 40 75.0
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 2.1e-09 65.1 40 75.0
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 2.1e-09 65.1 40 75.0
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 2.1e-09 65.1 40 75.0
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 2.8e-09 64.7 40 75.0
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 2.8e-09 64.7 40 72.5
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.8e-09 64.7 40 72.5
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 3.6e-09 64.3 40 72.5
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 3.6e-09 64.3 40 72.5
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 4.7e-09 63.9 40 72.5
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 6.2e-09 63.5 40 72.5
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 6.2e-09 63.5 40 72.5
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 6.2e-09 63.5 40 72.5
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 8.1e-09 63.2 40 72.5
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 1.1e-08 62.8 40 70.0
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 1.1e-08 62.8 40 72.5
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 1.1e-08 62.8 40 72.5
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.1e-08 62.8 40 72.5
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 1.1e-08 62.8 69 49.3
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 1.1e-08 62.8 40 70.0
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.4e-08 62.4 40 70.0
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 1.4e-08 62.4 40 72.5
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 1.4e-08 62.4 40 70.0
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.4e-08 62.4 40 70.0
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.4e-08 62.4 40 70.0
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 1.4e-08 62.4 69 50.7
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.8e-08 62.0 40 70.0
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 1.8e-08 62.0 40 67.5
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 1.8e-08 62.0 40 67.5
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 1.8e-08 62.0 40 70.0
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 2.3e-08 61.6 40 72.5
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 2.3e-08 61.6 40 72.5
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 2.3e-08 61.6 40 70.0
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 2.3e-08 61.6 40 72.5
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 2.3e-08 61.6 40 70.0
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 2.3e-08 61.6 40 70.0
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 3.1e-08 61.2 40 65.0
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 3.1e-08 61.2 40 67.5
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 3.1e-08 61.2 40 67.5
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 3.1e-08 61.2 40 67.5
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 3.1e-08 61.2 40 70.0
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 3.1e-08 61.2 40 67.5
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 3.1e-08 61.2 40 70.0
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 4.0e-08 60.8 40 67.5
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 4.0e-08 60.8 40 67.5
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 4.0e-08 60.8 40 70.0
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 4.0e-08 60.8 40 70.0
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 5.2e-08 60.5 40 67.5
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 5.2e-08 60.5 70 45.7
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 5.2e-08 60.5 40 65.0
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 5.2e-08 60.5 40 67.5
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 5.2e-08 60.5 40 70.0
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 5.2e-08 60.5 40 67.5
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 5.2e-08 60.5 40 67.5
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 6.8e-08 60.1 40 67.5
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 6.8e-08 60.1 40 67.5
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 6.8e-08 60.1 40 70.0
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 6.8e-08 60.1 69 49.3
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 6.8e-08 60.1 38 76.3
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 8.9e-08 59.7 40 70.0
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 8.9e-08 59.7 40 67.5
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 8.9e-08 59.7 69 46.4
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 8.9e-08 59.7 40 67.5
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 8.9e-08 59.7 69 46.4
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 1.2e-07 59.3 40 65.0
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 1.2e-07 59.3 40 67.5
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.2e-07 59.3 40 70.0
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.5e-07 58.9 40 67.5
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 1.5e-07 58.9 40 67.5
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 1.5e-07 58.9 40 67.5
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 1.5e-07 58.9 40 67.5
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.0e-07 58.5 40 65.0
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 2.0e-07 58.5 40 67.5
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 2.0e-07 58.5 69 44.9
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 2.0e-07 58.5 40 67.5
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.6e-07 58.2 40 65.0
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 2.6e-07 58.2 40 65.0
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 3.4e-07 57.8 69 46.4
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 3.4e-07 57.8 40 67.5
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 4.4e-07 57.4 69 46.4
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 4.4e-07 57.4 40 65.0
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 4.4e-07 57.4 40 67.5
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 4.4e-07 57.4 40 67.5
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 4.4e-07 57.4 40 67.5
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 5.8e-07 57.0 40 65.0
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 5.8e-07 57.0 40 65.0
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 7.6e-07 56.6 40 67.5
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 9.9e-07 56.2 40 65.0
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 9.9e-07 56.2 40 60.0
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 9.9e-07 56.2 40 60.0
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 9.9e-07 56.2 69 43.5
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 9.9e-07 56.2 69 46.4
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 1.3e-06 55.8 40 65.0
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 1.7e-06 55.5 40 65.0
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 1.7e-06 55.5 40 62.5
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 2.2e-06 55.1 40 62.5
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 2.2e-06 55.1 40 62.5
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 2.2e-06 55.1 40 60.0
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 2.9e-06 54.7 40 65.0
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 2.9e-06 54.7 40 62.5
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 2.9e-06 54.7 40 62.5
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 4.9e-06 53.9 40 62.5
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 4.9e-06 53.9 40 62.5
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 4.9e-06 53.9 40 62.5
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 6.4e-06 53.5 40 62.5
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 6.4e-06 53.5 40 60.0
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 8.4e-06 53.1 40 62.5


User provided reference genes

Program Settings