Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 0.0e+00 1121.7 586 100.0
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 2.8e-295 1018.1 597 91.1
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 4.9e-292 1007.3 614 86.6
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.7e-290 1001.5 598 90.3
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 5.9e-290 1000.3 597 89.9
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.1e-287 991.9 597 89.6
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 6.9e-238 827.4 602 74.6
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 1.3e-220 770.0 604 69.4
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 1.3e-215 753.4 603 68.5
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 5.5e-211 738.0 615 66.0
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 6.1e-210 734.6 615 68.1
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 3.9e-209 731.9 589 70.5
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 2.6e-205 719.2 550 69.1
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 3.5e-205 718.8 608 64.6
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 1.7e-204 716.5 605 64.5
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 6.5e-204 714.5 609 65.2
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 8.5e-204 714.1 597 66.2
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 5.5e-203 711.4 613 66.4
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 8.8e-201 704.1 571 67.4
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 1.2e-200 703.7 610 63.6
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 2.6e-200 702.6 602 65.0
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 3.3e-200 702.2 610 64.6
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 8.2e-199 697.6 616 63.6
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 1.8e-198 696.4 593 64.1
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 2.4e-198 696.0 596 64.3
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 3.1e-198 695.7 615 65.2
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 9.1e-198 694.1 609 64.2
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 3.5e-197 692.2 598 65.2
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 4.5e-197 691.8 417 81.5
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 1.7e-196 689.9 596 64.4
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 5.0e-196 688.3 540 68.1
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 6.5e-196 688.0 609 64.4
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 1.9e-195 686.4 602 64.3
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 9.4e-195 684.1 634 61.5
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 1.6e-194 683.3 601 63.4
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 2.7e-194 682.6 549 67.2
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 4.7e-194 681.8 600 62.8
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 4.7e-194 681.8 514 70.8
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 3.0e-193 679.1 601 62.7
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 4.0e-193 678.7 602 63.1
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 8.8e-193 677.6 591 64.5
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 1.2e-192 677.2 562 65.5
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 2.6e-192 676.0 545 66.4
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 1.7e-191 673.3 602 62.8
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 6.3e-191 671.4 605 61.0
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 6.3e-191 671.4 416 79.6
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 6.3e-191 671.4 549 65.6
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 1.4e-190 670.2 415 80.2
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 3.1e-190 669.1 539 67.2
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 7.0e-190 667.9 521 68.5
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 7.0e-190 667.9 589 63.3
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 2.0e-189 666.4 418 78.7
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 2.0e-189 666.4 568 66.9
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 5.9e-189 664.8 418 78.7
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 5.9e-189 664.8 634 62.3
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 3.8e-188 662.1 412 80.6
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.5e-187 660.2 570 64.2
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 5.5e-187 658.3 594 61.3
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 1.6e-186 656.8 628 60.0
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 1.6e-186 656.8 626 59.7
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 2.8e-186 656.0 617 60.3
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 4.7e-186 655.2 582 63.4
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 8.0e-186 654.4 593 63.1
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 1.0e-185 654.1 412 79.9
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 1.0e-185 654.1 600 60.8
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.8e-185 653.3 611 62.2
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 1.8e-185 653.3 576 63.5
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 3.0e-185 652.5 588 62.6
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 3.0e-185 652.5 609 63.9
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 6.8e-185 651.4 614 60.7
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 6.8e-185 651.4 413 78.7
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 7.5e-184 647.9 609 62.1
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 1.3e-183 647.1 620 59.0
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 1.7e-183 646.7 598 60.4
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 1.8e-182 643.3 501 68.3
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 2.4e-182 642.9 410 79.0
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 3.1e-182 642.5 574 62.7
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 9.2e-182 641.0 416 76.7
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 9.2e-182 641.0 410 77.6
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.6e-181 640.2 603 60.2
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 4.5e-181 638.6 638 59.2
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 1.0e-180 637.5 477 68.8
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.3e-180 637.1 540 64.1
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.7e-180 636.7 551 63.3
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.7e-180 636.7 610 63.0
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 2.3e-180 636.3 627 58.5
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 2.9e-180 636.0 415 77.8
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 5.0e-180 635.2 604 63.2
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.1e-179 634.0 409 76.3
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.5e-179 633.6 598 58.7
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 3.3e-179 632.5 530 64.7
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 5.6e-179 631.7 601 60.2
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 5.6e-179 631.7 602 60.3
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 1.2e-178 630.6 577 61.0
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.2e-178 630.6 409 78.0
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.6e-178 630.2 593 59.5
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 3.0e-177 625.9 592 61.5
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 4.0e-177 625.5 599 59.3
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 6.8e-177 624.8 598 58.0
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 6.8e-177 624.8 467 70.2
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 6.8e-177 624.8 412 75.2
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.5e-176 623.6 591 58.4
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 4.4e-176 622.1 611 58.4
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 5.7e-176 621.7 545 60.9
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 2.2e-175 619.8 608 58.9
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 2.2e-175 619.8 410 76.3
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 1.4e-174 617.1 596 58.7
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 4.1e-174 615.5 551 63.7
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 5.4e-174 615.1 521 63.3
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 9.2e-174 614.4 519 63.8
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 9.2e-174 614.4 519 63.6
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 1.6e-173 613.6 574 58.9
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 4.6e-173 612.1 519 64.5
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 5.9e-173 611.7 519 63.6
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 1.7e-172 610.1 519 63.6
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 3.9e-172 609.0 620 60.0
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 2.5e-171 606.3 585 59.3
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 3.3e-171 605.9 554 60.5
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 4.3e-171 605.5 481 65.1
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 2.8e-170 602.8 411 73.0
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 2.8e-170 602.8 412 73.5
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 2.8e-170 602.8 412 73.5
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 3.6e-170 602.4 527 62.6
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 6.2e-170 601.7 412 73.3
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 6.2e-170 601.7 412 73.3
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 6.2e-170 601.7 412 73.3
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 1.0e-169 600.9 612 57.7
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 6.8e-169 598.2 605 57.7
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 2.0e-168 596.7 593 59.5
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 7.5e-168 594.7 603 56.9
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 2.9e-167 592.8 583 58.7
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 3.7e-167 592.4 555 60.4
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 5.2e-161 572.0 382 86.9
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 9.8e-160 567.8 488 62.7
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.7e-159 567.0 471 63.5
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.9e-159 565.5 362 78.7
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 5.8e-152 542.0 607 55.0
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 3.9e-140 502.7 369 68.0
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 2.0e-136 490.3 366 68.3
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.3e-135 487.6 350 67.7
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.4e-134 484.2 404 61.9
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 6.9e-129 465.3 347 66.9
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 6.9e-129 465.3 377 65.5
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 5.3e-121 439.1 324 65.4
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 1.2e-96 358.2 390 50.3
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 6.5e-95 352.4 209 79.4
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 4.1e-89 333.2 197 79.7
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 4.5e-80 303.1 180 79.4
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 1.1e-73 282.0 193 73.1
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 2.7e-72 277.3 159 82.4
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 3.8e-71 273.5 156 83.3
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 3.8e-71 273.5 156 83.3
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 7.3e-62 242.7 438 39.7
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 2.3e-60 237.7 363 37.5
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 2.5e-54 217.6 302 39.7
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 1.1e-49 202.2 216 57.9
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 6.6e-47 193.0 263 40.7
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 5.8e-43 179.9 128 71.9
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 2.3e-39 167.9 109 75.2
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 8.9e-36 156.0 110 68.2
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 3.8e-34 150.6 186 46.8
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 6.6e-31 139.8 210 37.1
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 9.6e-30 136.0 88 72.7
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 4.0e-28 130.6 83 72.3
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 9.0e-28 129.4 113 59.3
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 1.5e-27 128.6 128 55.5
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 4.9e-26 123.6 83 67.5
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 6.4e-26 123.2 99 63.6
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 1.1e-20 105.9 120 50.0
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 5.1e-15 87.0 231 35.1
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 1.1e-14 85.9 98 53.1
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 3.4e-11 74.3 188 31.9
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 4.5e-11 73.9 90 51.1
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 4.5e-11 73.9 48 72.9
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 3.8e-10 70.9 111 39.6
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 1.9e-06 58.5 39 74.4


User provided reference genes

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