Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 1.5e-39 165.6 78 100.0
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 9.4e-34 146.4 80 88.8
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 8.0e-33 143.3 80 86.2
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 6.3e-30 133.7 79 82.3
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 1.1e-29 132.9 80 80.0
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.1e-29 131.0 79 81.0
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.0e-27 126.3 82 76.8
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.3e-27 125.9 76 76.3
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.3e-27 125.9 76 76.3
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 1.0e-24 116.3 80 68.8
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 9.8e-23 109.8 81 65.4
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 1.3e-22 109.4 81 65.4
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.3e-22 109.4 81 65.4
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 2.8e-22 108.2 82 68.3
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 1.1e-21 106.3 81 66.7
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 2.8e-17 91.7 65 67.7
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 3.4e-15 84.7 74 54.1
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 3.4e-15 84.7 63 60.3
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 3.4e-15 84.7 63 60.3
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 4.4e-15 84.3 75 54.7
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 5.7e-15 84.0 79 53.2
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 7.5e-15 83.6 72 56.9
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 1.3e-14 82.8 74 54.1
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 1.7e-14 82.4 79 51.9
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 1.7e-14 82.4 79 50.6
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 1.7e-14 82.4 65 58.5
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 1.7e-14 82.4 65 58.5
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 2.2e-14 82.0 72 55.6
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 4.9e-14 80.9 74 55.4
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 6.3e-14 80.5 72 54.2
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 1.1e-13 79.7 73 49.3
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 1.1e-13 79.7 71 60.6
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 1.4e-13 79.3 58 65.5
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 1.8e-13 79.0 74 55.4
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.2e-13 78.2 69 55.1
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 3.2e-13 78.2 72 48.6
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 4.1e-13 77.8 75 52.0
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 4.1e-13 77.8 76 53.9
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 5.4e-13 77.4 51 66.7
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 7.0e-13 77.0 70 55.7
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 7.0e-13 77.0 74 51.4
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 2.0e-12 75.5 77 49.4
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 4.6e-12 74.3 70 54.3
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 7.8e-12 73.6 79 46.8
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.0e-11 73.2 69 53.6
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 1.0e-11 73.2 87 46.0
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 1.3e-11 72.8 71 49.3
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 1.7e-11 72.4 71 46.5
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.7e-11 72.4 71 47.9
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 2.3e-11 72.0 49 61.2
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 3.9e-11 71.2 74 45.9
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 5.0e-11 70.9 72 51.4
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 6.6e-11 70.5 69 50.7
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 8.6e-11 70.1 68 55.9
Cc10_g10240 Coffea canephora HOM05D007628 ORTHO05D007342 8.6e-11 70.1 70 50.0
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.5e-10 69.3 79 46.8
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 1.5e-10 69.3 74 47.3
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 2.5e-10 68.6 73 53.4
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 3.3e-10 68.2 66 51.5
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 4.3e-10 67.8 69 44.9
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 4.3e-10 67.8 54 57.4
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 4.3e-10 67.8 57 54.4
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 7.3e-10 67.0 79 45.6
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 1.2e-09 66.2 52 61.5
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 1.2e-09 66.2 67 47.8
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 1.6e-09 65.9 64 48.4
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 1.6e-09 65.9 74 44.6
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 1.6e-09 65.9 67 46.3
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.6e-09 65.9 77 49.4
unitig_578.g16589 Utricularia gibba HOM05D007628 ORTHO05D007342 1.6e-09 65.9 51 58.8
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 3.6e-09 64.7 75 44.0
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 3.6e-09 64.7 69 44.9
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 4.7e-09 64.3 83 48.2
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 8.0e-09 63.5 79 44.3
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 8.0e-09 63.5 48 56.2
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 8.0e-09 63.5 78 48.7
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 1.0e-08 63.2 75 42.7
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 1.4e-08 62.8 75 44.0
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 1.4e-08 62.8 75 44.0
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 1.4e-08 62.8 75 44.0
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.4e-08 62.8 77 46.8
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 1.4e-08 62.8 65 47.7
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 1.8e-08 62.4 75 44.0
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.8e-08 62.4 45 60.0
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 2.3e-08 62.0 84 45.2
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 2.3e-08 62.0 53 50.9
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 3.1e-08 61.6 83 39.8
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 3.1e-08 61.6 67 41.8
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 4.0e-08 61.2 78 50.0
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 4.0e-08 61.2 75 48.0
Sopen07g028650 Solanum pennellii HOM05D008200 ORTHO05D010849 4.0e-08 61.2 78 47.4
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 5.2e-08 60.8 64 53.1
PGSC0003DMG400018328 Solanum tuberosum HOM05D008200 ORTHO05D007342 5.2e-08 60.8 72 48.6
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 1.5e-07 59.3 72 44.4
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 2.6e-07 58.5 46 50.0
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.4e-07 58.2 65 46.2
Solyc07g054720.2 Solanum lycopersicum HOM05D008200 ORTHO05D007342 3.4e-07 58.2 78 44.9
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 4.4e-07 57.8 71 45.1
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 5.8e-07 57.4 77 44.2
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 7.5e-07 57.0 68 50.0
unitig_578.g16588 Utricularia gibba HOM05D007628 ORTHO05D007342 1.3e-06 56.2 38 57.9
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 2.2e-06 55.5 45 55.6
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 2.9e-06 55.1 73 43.8
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 3.7e-06 54.7 50 46.0
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 3.7e-06 54.7 72 43.1


User provided reference genes

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