Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0228281 Rosa chinensis HOM05D003900 ORTHO05D005009 9.1e-78 293.5 148 100.0
RcHm_v2.0_Chr7g0228211 Rosa chinensis HOM05D003900 ORTHO05D005009 3.5e-61 238.4 154 81.2
RcHm_v2.0_Chr3g0468501 Rosa chinensis HOM05D003900 ORTHO05D005009 2.1e-50 202.6 115 88.7
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 4.4e-48 194.9 146 70.5
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 5.4e-38 161.4 158 60.8
FvH4_5g32150 Fragaria vesca HOM05D003900 ORTHO05D005009 2.5e-35 152.5 120 68.3
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.3e-35 151.8 125 66.4
FvH4_5g03011 Fragaria vesca HOM05D003900 ORTHO05D005009 1.2e-32 143.7 121 64.5
MD07G1131300 Malus domestica HOM05D003900 ORTHO05D005009 7.3e-27 124.4 154 50.0
FAN06G4981 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.2e-26 123.6 152 52.6
FAN06G2614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.1e-26 122.9 152 52.6
FvH4_7g15360 Fragaria vesca HOM05D003900 ORTHO05D005009 5.8e-24 114.8 152 50.7
FAN10G1060 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.6e-21 106.7 148 48.6
FAN10G3614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.6e-21 106.7 148 48.6
FAN03G2211 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.6e-21 105.1 152 48.0
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 1.0e-20 104.0 122 50.8
Haze_15564 Corylus avellana HOM05D003900 ORTHO05D005009 1.1e-17 94.0 116 49.1
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 3.1e-17 92.4 128 46.9
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 2.6e-16 89.4 115 44.3
Cfa003873 Carpinus fangiana HOM05D003900 ORTHO05D005009 2.6e-16 89.4 116 46.6
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 5.8e-16 88.2 127 42.5
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 1.3e-15 87.0 146 43.2
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.7e-15 86.7 127 44.1
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 1.4e-14 83.6 125 46.4
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 3.2e-14 82.4 117 42.7
Potri.014G090400 Populus trichocarpa HOM05D003900 ORTHO05D005009 3.2e-14 82.4 154 39.6
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 4.1e-14 82.0 145 39.3
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 7.1e-14 81.3 147 41.5
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 7.1e-14 81.3 109 43.1
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 1.2e-13 80.5 120 43.3
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 2.1e-13 79.7 144 38.9
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 2.1e-13 79.7 117 42.7
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 2.7e-13 79.3 144 38.9
CiPaw.01G067200 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.7e-13 79.3 127 41.7
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 3.5e-13 79.0 147 41.5
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 3.9e-12 75.5 97 47.4
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.1e-11 73.9 128 39.8
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 1.1e-11 73.9 137 41.6
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 4.3e-11 72.0 98 42.9
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 4.3e-11 72.0 98 42.9
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 4.3e-11 72.0 142 41.5
QL04p055515 Quercus lobata HOM05D003900 ORTHO05D005009 2.1e-10 69.7 123 42.3
AUR62004412 Chenopodium quinoa HOM05D003900 ORTHO05D005009 4.7e-10 68.6 108 39.8
AUR62022618 Chenopodium quinoa HOM05D003900 ORTHO05D005009 8.1e-10 67.8 114 40.4
Ciclev10019067m.g Citrus clementina HOM05D003900 ORTHO05D005009 2.4e-09 66.2 136 36.0
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 2.4e-09 66.2 125 36.8
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 2.4e-09 66.2 104 35.6
GSVIVG01026966001 Vitis vinifera HOM05D003900 ORTHO05D005009 3.1e-09 65.9 131 37.4
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 1.5e-08 63.5 144 34.0
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 2.6e-08 62.8 130 34.6
arahy.Tifrunner.gnm1.ann1.K45FBX Arachis hypogaea HOM05D003900 ORTHO05D005009 4.9e-07 58.5 95 38.9
Glyma.16G031800 Glycine max HOM05D003900 ORTHO05D005009 1.4e-06 57.0 97 38.1
arahy.Tifrunner.gnm1.ann1.U9H0N8 Arachis hypogaea HOM05D003900 ORTHO05D005009 2.4e-06 56.2 95 37.9
EL10Ac1g00355 Beta vulgaris HOM05D003900 ORTHO05D005009 4.2e-06 55.5 132 34.8
Sp4g28170 Schrenkiella parvula HOM05D003900 ORTHO05D005009 5.4e-06 55.1 118 35.6
CARHR141390 Cardamine hirsuta HOM05D003900 ORTHO05D005009 7.1e-06 54.7 114 31.6


User provided reference genes

Program Settings