Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 5.3e-40 167.2 80 100.0
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 3.2e-37 157.9 80 93.8
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 1.3e-35 152.5 79 89.9
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 5.1e-35 150.6 80 86.2
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.3e-34 147.5 79 87.3
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 1.6e-33 145.6 80 88.8
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.8e-33 144.1 82 82.9
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 3.0e-27 124.8 81 71.6
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 3.9e-27 124.4 81 71.6
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 3.9e-27 124.4 81 71.6
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 3.3e-26 121.3 82 74.4
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.1e-24 116.3 79 72.2
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.1e-24 116.3 79 72.2
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 1.5e-23 112.5 81 67.9
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 6.5e-22 107.1 65 78.5
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 1.9e-21 105.5 82 64.6
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 3.3e-18 94.7 76 60.5
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 5.7e-18 94.0 74 60.8
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 7.4e-18 93.6 63 71.4
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 2.2e-17 92.0 80 53.8
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 2.8e-17 91.7 76 60.5
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 4.8e-17 90.9 71 60.6
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 8.2e-17 90.1 82 53.7
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 1.8e-16 89.0 74 56.8
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 3.1e-16 88.2 71 59.2
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 3.1e-16 88.2 80 52.5
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 5.3e-16 87.4 75 57.3
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 5.3e-16 87.4 74 60.8
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 7.0e-16 87.0 72 63.9
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 9.1e-16 86.7 76 55.3
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 1.2e-15 86.3 65 63.1
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 1.2e-15 86.3 65 63.1
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 3.5e-15 84.7 73 58.9
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 7.7e-15 83.6 73 53.4
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 1.0e-14 83.2 75 54.7
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.3e-14 82.8 73 60.3
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 2.9e-14 81.6 72 48.6
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 5.0e-14 80.9 59 62.7
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 1.5e-13 79.3 72 55.6
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 1.9e-13 79.0 77 53.2
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 1.9e-13 79.0 73 54.8
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 4.2e-13 77.8 73 58.9
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 5.5e-13 77.4 65 60.0
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 5.5e-13 77.4 65 60.0
Cc10_g10240 Coffea canephora HOM05D007628 ORTHO05D007342 9.4e-13 76.6 71 53.5
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 2.7e-12 75.1 55 65.5
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 3.6e-12 74.7 55 60.0
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 3.6e-12 74.7 82 50.0
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 6.1e-12 73.9 69 56.5
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 1.0e-11 73.2 68 50.0
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 1.8e-11 72.4 71 52.1
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 5.2e-11 70.9 74 47.3
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 5.2e-11 70.9 60 56.7
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 6.7e-11 70.5 55 61.8
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 8.8e-11 70.1 63 54.0
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 1.1e-10 69.7 84 48.8
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 2.0e-10 68.9 85 44.7
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 2.6e-10 68.6 73 53.4
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 2.6e-10 68.6 79 48.1
unitig_578.g16589 Utricularia gibba HOM05D007628 ORTHO05D007342 3.3e-10 68.2 75 45.3
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 4.4e-10 67.8 75 46.7
Sopen07g028650 Solanum pennellii HOM05D008200 ORTHO05D010849 5.7e-10 67.4 78 47.4
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 5.7e-10 67.4 77 51.9
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 7.5e-10 67.0 68 50.0
PGSC0003DMG400018328 Solanum tuberosum HOM05D008200 ORTHO05D007342 9.7e-10 66.6 72 48.6
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 1.3e-09 66.2 85 43.5
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 1.3e-09 66.2 80 45.0
TPR.G34171 Trifolium pratense HOM05D007628 ORTHO05D007342 1.3e-09 66.2 65 49.2
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.7e-09 65.9 78 48.7
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 2.8e-09 65.1 71 43.7
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 4.8e-09 64.3 70 54.3
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 4.8e-09 64.3 76 46.1
Solyc07g054720.2 Solanum lycopersicum HOM05D008200 ORTHO05D007342 4.8e-09 64.3 78 44.9
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 4.8e-09 64.3 77 49.4
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 4.8e-09 64.3 67 49.3
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 8.2e-09 63.5 80 43.8
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 8.2e-09 63.5 83 48.2
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 8.2e-09 63.5 71 42.3
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 1.1e-08 63.2 70 44.3
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 1.1e-08 63.2 46 60.9
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 1.4e-08 62.8 78 48.7
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 1.8e-08 62.4 75 50.7
unitig_578.g16588 Utricularia gibba HOM05D007628 ORTHO05D007342 1.8e-08 62.4 49 51.0
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 2.4e-08 62.0 64 54.7
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 3.1e-08 61.6 74 44.6
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 4.1e-08 61.2 71 42.3
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 5.3e-08 60.8 69 43.5
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 5.3e-08 60.8 68 51.5
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 5.3e-08 60.8 75 41.3
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 7.0e-08 60.5 76 43.4
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 9.1e-08 60.1 73 46.6
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 1.6e-07 59.3 74 43.2
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 2.0e-07 58.9 74 44.6
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 2.0e-07 58.9 74 44.6
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 2.0e-07 58.9 74 44.6
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 2.7e-07 58.5 74 44.6
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 2.7e-07 58.5 54 51.9
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 3.5e-07 58.2 65 43.1
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 3.5e-07 58.2 72 44.4
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 7.7e-07 57.0 67 47.8
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 2.2e-06 55.5 48 54.2
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 5.0e-06 54.3 77 42.9
Sopen03g029540 Solanum pennellii HOM05D008200 ORTHO05D010849 6.5e-06 53.9 53 56.6
PGSC0003DMG400015290 Solanum tuberosum HOM05D008200 ORTHO05D010849 6.5e-06 53.9 53 54.7
CAN.G861.41 Capsicum annuum HOM05D008200 ORTHO05D010849 8.5e-06 53.5 53 50.9
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 8.5e-06 53.5 69 44.9


User provided reference genes

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