Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 4.1e-40 167.5 80 100.0
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 1.9e-37 158.7 80 93.8
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 2.7e-36 154.8 79 89.9
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.3e-35 151.8 79 87.3
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 9.7e-34 146.4 80 83.8
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 1.1e-32 142.9 80 86.2
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 9.0e-32 139.8 82 80.5
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 8.8e-27 123.2 82 74.4
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.2e-25 118.6 81 67.9
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 2.8e-25 118.2 81 67.9
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.8e-25 118.2 81 67.9
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 6.3e-25 117.1 79 72.2
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 6.3e-25 117.1 79 72.2
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 9.1e-24 113.2 81 67.9
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 1.4e-21 105.9 82 64.6
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 3.6e-20 101.3 65 75.4
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 2.8e-17 91.7 76 56.6
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 3.7e-17 91.3 74 62.2
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 1.1e-16 89.7 82 54.9
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 1.1e-16 89.7 75 57.3
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 1.4e-16 89.4 72 62.5
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 3.1e-16 88.2 76 57.9
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 3.1e-16 88.2 74 52.7
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 4.1e-16 87.8 80 53.8
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 4.1e-16 87.8 63 68.3
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 9.1e-16 86.7 71 57.7
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 9.1e-16 86.7 74 56.8
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 2.6e-15 85.1 76 53.9
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 2.6e-15 85.1 65 63.1
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 2.6e-15 85.1 65 63.1
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 5.9e-15 84.0 71 56.3
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 5.9e-15 84.0 82 51.2
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 7.7e-15 83.6 74 59.5
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 1.7e-14 82.4 73 58.9
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 3.8e-14 81.3 75 53.3
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 1.5e-13 79.3 73 54.8
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.5e-13 78.6 73 57.5
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 4.2e-13 77.8 72 54.2
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 7.2e-13 77.0 59 61.0
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 7.2e-13 77.0 65 60.0
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 7.2e-13 77.0 72 45.8
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 9.4e-13 76.6 86 51.2
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 1.2e-12 76.3 65 60.0
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 1.2e-12 76.3 65 60.0
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 1.6e-12 75.9 77 51.9
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 2.1e-12 75.5 55 60.0
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 8.0e-12 73.6 73 56.2
Cc10_g10240 Coffea canephora HOM05D007628 ORTHO05D007342 8.0e-12 73.6 71 52.1
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 8.0e-12 73.6 82 48.8
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 2.3e-11 72.0 68 50.0
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 5.2e-11 70.9 73 53.4
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 6.7e-11 70.5 73 53.4
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 8.8e-11 70.1 77 51.9
unitig_578.g16589 Utricularia gibba HOM05D007628 ORTHO05D007342 8.8e-11 70.1 75 45.3
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 1.5e-10 69.3 84 47.6
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 1.5e-10 69.3 71 50.7
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.6e-10 68.6 78 48.7
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 3.3e-10 68.2 83 49.4
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 4.4e-10 67.8 74 47.3
unitig_578.g16588 Utricularia gibba HOM05D007628 ORTHO05D007342 4.4e-10 67.8 54 50.0
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 7.5e-10 67.0 77 49.4
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 1.3e-09 66.2 57 56.1
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 1.7e-09 65.9 63 50.8
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 1.7e-09 65.9 75 46.7
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 2.2e-09 65.5 78 48.7
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 2.2e-09 65.5 76 48.7
Sopen07g028650 Solanum pennellii HOM05D008200 ORTHO05D010849 2.2e-09 65.5 78 47.4
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 2.8e-09 65.1 79 45.6
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 2.8e-09 65.1 75 50.7
PGSC0003DMG400018328 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.8e-09 65.1 72 48.6
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 4.8e-09 64.3 66 54.5
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 6.3e-09 63.9 85 41.2
TPR.G34171 Trifolium pratense HOM05D007628 ORTHO05D007342 6.3e-09 63.9 65 49.2
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 1.1e-08 63.2 68 51.5
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 1.4e-08 62.8 72 48.6
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 1.8e-08 62.4 71 43.7
Solyc07g054720.2 Solanum lycopersicum HOM05D008200 ORTHO05D007342 1.8e-08 62.4 78 44.9
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 2.4e-08 62.0 74 43.2
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 4.1e-08 61.2 85 40.0
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 4.1e-08 61.2 72 47.2
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 5.3e-08 60.8 70 52.9
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 5.3e-08 60.8 64 48.4
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 5.3e-08 60.8 73 46.6
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 7.0e-08 60.5 67 46.3
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 1.2e-07 59.7 46 58.7
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 1.2e-07 59.7 71 40.8
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 1.6e-07 59.3 70 44.3
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 1.6e-07 59.3 54 51.9
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 3.5e-07 58.2 74 44.6
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 3.5e-07 58.2 80 42.5
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 3.5e-07 58.2 71 42.3
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 5.9e-07 57.4 72 43.1
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 7.7e-07 57.0 75 40.0
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 7.7e-07 57.0 77 42.9
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 1.0e-06 56.6 69 42.0
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 2.2e-06 55.5 74 44.6
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 2.2e-06 55.5 74 44.6
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 2.2e-06 55.5 74 44.6
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 2.9e-06 55.1 74 44.6
CAN.G861.41 Capsicum annuum HOM05D008200 ORTHO05D010849 2.9e-06 55.1 53 52.8
Solyc06g061210.4 Solanum lycopersicum HOM05D001063 ORTHO05D000986 6.5e-06 53.9 62 51.6
Sopen03g029540 Solanum pennellii HOM05D008200 ORTHO05D010849 8.5e-06 53.5 53 56.6
PGSC0003DMG400015290 Solanum tuberosum HOM05D008200 ORTHO05D010849 8.5e-06 53.5 53 54.7


User provided reference genes

Program Settings