Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0227451 Rosa chinensis HOM05D000038 ORTHO05D000423 1.1e-80 303.1 144 100.0
RcHm_v2.0_Chr1g0342651 Rosa chinensis HOM05D000038 ORTHO05D000423 1.9e-43 179.5 90 94.4
RcHm_v2.0_Chr7g0227561 Rosa chinensis HOM05D000038 ORTHO05D000423 4.3e-32 141.7 140 52.1
RcHm_v2.0_Chr7g0227571 Rosa chinensis HOM05D000038 ORTHO05D000423 1.2e-31 140.2 141 51.8
FAN04G1645 Fragaria x ananassa HOM05D000038 ORTHO05D000423 3.4e-29 132.1 141 49.6
FAN18G2474 Fragaria x ananassa HOM05D000038 ORTHO05D000423 3.4e-29 132.1 141 48.2
FvH4_5g31690 Fragaria vesca HOM05D000038 ORTHO05D000423 5.8e-29 131.3 141 48.2
FAN08G1569 Fragaria x ananassa HOM05D000038 ORTHO05D000423 8.4e-28 127.5 143 45.5
Rhsim06G0106000 Rhododendron simsii HOM05D000038 ORTHO05D000423 8.4e-28 127.5 152 45.4
FvH4_5g31680 Fragaria vesca HOM05D000038 ORTHO05D000423 1.9e-27 126.3 145 46.9
Dinv27345 Davidia involucrata HOM05D000038 ORTHO05D000423 5.4e-27 124.8 137 46.7
Haze_25415 Corylus avellana HOM05D000038 ORTHO05D000423 6.0e-26 121.3 144 46.5
Rhsim06G0105600 Rhododendron simsii HOM05D000038 ORTHO05D000423 6.0e-26 121.3 150 44.0
vmacro23168 Vaccinium macrocarpon HOM05D000038 ORTHO05D000423 7.8e-26 120.9 152 43.4
Cfa002231 Carpinus fangiana HOM05D000038 ORTHO05D000423 1.0e-25 120.6 138 47.1
Sc01g0001380 Simmondsia chinensis HOM05D000038 ORTHO05D000423 3.0e-25 119.0 141 44.7
Dinv01182 Davidia involucrata HOM05D000038 ORTHO05D000423 3.9e-25 118.6 142 42.3
Prupe.1G502100 Prunus persica HOM05D000038 ORTHO05D000423 3.9e-25 118.6 137 44.5
TWI79G0429 Tripterygium wilfordii HOM05D000038 ORTHO05D000423 6.6e-25 117.9 144 45.1
Gorai.009G243800 Gossypium raimondii HOM05D000038 ORTHO05D000423 2.5e-24 115.9 138 44.2
RhsimUnG0218200 Rhododendron simsii HOM05D000038 ORTHO05D000423 2.5e-24 115.9 152 39.5
RcHm_v2.0_Chr6g0295271 Rosa chinensis HOM05D000038 ORTHO05D000423 2.5e-24 115.9 152 42.1
COL.COLO4_07273 Corchorus olitorius HOM05D000038 ORTHO05D000423 5.6e-24 114.8 139 42.4
FvH4_2g26490 Fragaria vesca HOM05D000038 ORTHO05D000423 5.6e-24 114.8 152 41.4
FAN24G1726 Fragaria x ananassa HOM05D000038 ORTHO05D000423 5.6e-24 114.8 152 41.4
Duzib093G0782 Durio zibethinus HOM05D000038 ORTHO05D000423 7.3e-24 114.4 139 43.2
Actinidia29451 Actinidia chinensis HOM05D000038 ORTHO05D000423 9.6e-24 114.0 137 42.3
Gohir.D05G235500 Gossypium hirsutum HOM05D000038 ORTHO05D000423 1.2e-23 113.6 138 43.5
Potri.019G013797 Populus trichocarpa HOM05D000038 ORTHO05D000423 1.6e-23 113.2 146 41.8
FAN15G2869 Fragaria x ananassa HOM05D000038 ORTHO05D000423 2.1e-23 112.8 152 40.8
FAN20G0448 Fragaria x ananassa HOM05D000038 ORTHO05D000423 2.1e-23 112.8 152 41.4
Gohir.A05G233100 Gossypium hirsutum HOM05D000038 ORTHO05D000423 2.1e-23 112.8 138 42.8
Eucgr.F03765 Eucalyptus grandis HOM05D000038 ORTHO05D000423 2.8e-23 112.5 154 41.6
CiPaw.03G254400 Carya illinoinensis HOM05D000038 ORTHO05D000423 3.6e-23 112.1 146 45.9
Migut.N03299 Erythranthe guttata HOM05D000038 ORTHO05D000423 6.2e-23 111.3 139 45.3
FAN27G2287 Fragaria x ananassa HOM05D000038 ORTHO05D000423 6.2e-23 111.3 149 40.9
DCAR_014110 Daucus carota HOM05D000038 ORTHO05D000423 8.1e-23 110.9 139 41.7
Lalb_Chr23g0270921 Lupinus albus HOM05D000038 ORTHO05D000423 8.1e-23 110.9 141 41.8
Lalb_Chr23g0270951 Lupinus albus HOM05D000038 ORTHO05D000423 8.1e-23 110.9 141 41.8
CANSAT25G3382 Cannabis sativa HOM05D000038 ORTHO05D000423 1.1e-22 110.5 122 43.4
Ca_15207_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000423 1.1e-22 110.5 139 41.7
Thecc.08G120900 Theobroma cacao HOM05D000038 ORTHO05D000423 1.1e-22 110.5 149 38.9
Nitab4.5_0010364g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000423 1.4e-22 110.2 154 39.0
Peaxi162Scf00451g00722 Petunia axillaris HOM05D000038 ORTHO05D000423 2.4e-22 109.4 154 40.3
Glyma.06G110700 Glycine max HOM05D000038 ORTHO05D000423 4.0e-22 108.6 140 42.9
Nitab4.5_0004554g0040 Nicotiana tabacum HOM05D000038 ORTHO05D000423 4.0e-22 108.6 154 39.0
Ciclev10000351m.g Citrus clementina HOM05D000038 ORTHO05D000423 6.9e-22 107.8 137 43.8
Rhsim08G0001300 Rhododendron simsii HOM05D000038 ORTHO05D000423 6.9e-22 107.8 145 40.0
ClCG11G015580 Citrullus lanatus HOM05D000038 ORTHO05D000423 9.0e-22 107.5 141 41.1
Potri.002G086500 Populus trichocarpa HOM05D000038 ORTHO05D000423 9.0e-22 107.5 139 41.7
TWI56G0409 Tripterygium wilfordii HOM05D000038 ORTHO05D000423 9.0e-22 107.5 139 40.3
CSS0019395 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000423 1.2e-21 107.1 139 41.0
CSS0047491 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000423 1.2e-21 107.1 139 41.0
Cfa015985 Carpinus fangiana HOM05D008523 ORTHO05D000423 1.2e-21 107.1 136 42.6
QL10p052623 Quercus lobata HOM05D000038 ORTHO05D000423 1.2e-21 107.1 137 44.5
Rhsim02G0075100 Rhododendron simsii HOM05D000038 ORTHO05D000423 1.2e-21 107.1 160 37.5
Sabra02G0067900 Salix brachista HOM05D000038 ORTHO05D000423 1.2e-21 107.1 139 41.7
Sabra19G0006700 Salix brachista HOM05D000038 ORTHO05D000423 1.2e-21 107.1 146 40.4
Sopen11g007810 Solanum pennellii HOM05D000038 ORTHO05D000423 1.2e-21 107.1 154 39.0
Ciclev10024976m.g Citrus clementina HOM05D000038 ORTHO05D000423 2.0e-21 106.3 146 39.7
Lj1g0002739 Lotus japonicus HOM05D000038 ORTHO05D000423 2.0e-21 106.3 139 41.7
PGSC0003DMG400000915 Solanum tuberosum HOM05D000038 ORTHO05D000423 2.0e-21 106.3 154 38.3
TPR.G19875 Trifolium pratense HOM05D000038 ORTHO05D000423 2.0e-21 106.3 146 37.7
Carub.0007s3119 Capsella rubella HOM05D000038 ORTHO05D000423 2.6e-21 105.9 147 40.1
Oeu050893.3 Olea europaea HOM05D000038 ORTHO05D000423 2.6e-21 105.9 137 42.3
Sabra19G0006400 Salix brachista HOM05D000038 ORTHO05D000423 2.6e-21 105.9 146 39.0
Duzib116G0346 Durio zibethinus HOM05D000038 ORTHO05D000423 3.4e-21 105.5 136 41.2
Gohir.D06G043400 Gossypium hirsutum HOM05D000038 ORTHO05D000423 4.4e-21 105.1 139 41.0
Gorai.010G048500 Gossypium raimondii HOM05D000038 ORTHO05D000423 4.4e-21 105.1 139 41.0
Lj4A607T51 Lonicera japonica HOM05D000038 ORTHO05D000423 4.4e-21 105.1 141 37.6
Medtr3g072800 Medicago truncatula HOM05D000038 ORTHO05D000423 4.4e-21 105.1 139 39.6
CiPaw.05G225000 Carya illinoinensis HOM05D000038 ORTHO05D000423 5.8e-21 104.8 136 41.2
Manes.02G160900 Manihot esculenta HOM05D000038 ORTHO05D000423 7.6e-21 104.4 139 39.6
Rhsim02G0074200 Rhododendron simsii HOM05D000038 ORTHO05D000423 7.6e-21 104.4 158 36.7
Rhsim06G0106200 Rhododendron simsii HOM05D000038 ORTHO05D000423 7.6e-21 104.4 153 40.5
PGR042G0291 Punica granatum HOM05D000038 ORTHO05D000423 9.9e-21 104.0 138 41.3
Sabra19G0013100 Salix brachista HOM05D000038 ORTHO05D000423 9.9e-21 104.0 146 39.0
CAN.G2.39 Capsicum annuum HOM05D000038 ORTHO05D000423 1.3e-20 103.6 154 37.7
Solyc04g015460.4 Solanum lycopersicum HOM05D000038 ORTHO05D000423 1.3e-20 103.6 144 41.0
Rhsim02G0074400 Rhododendron simsii HOM05D000038 ORTHO05D000423 2.2e-20 102.8 149 36.2
SalBow6G5627 Salvia bowleyana HOM05D000038 ORTHO05D000423 2.2e-20 102.8 137 40.9
PGSC0003DMG400027233 Solanum tuberosum HOM05D000038 ORTHO05D000423 2.2e-20 102.8 144 40.3
AL7G44170 Arabidopsis lyrata HOM05D000038 ORTHO05D000423 2.9e-20 102.4 148 39.2
CiPaw.05G225300 Carya illinoinensis HOM05D000038 ORTHO05D000423 2.9e-20 102.4 137 40.9
Haze_00485 Corylus avellana HOM05D000038 ORTHO05D000423 2.9e-20 102.4 137 40.1
Psat5g135200 Pisum sativum HOM05D000038 ORTHO05D000423 2.9e-20 102.4 145 37.9
Nitab4.5_0000733g0180 Nicotiana tabacum HOM05D000038 ORTHO05D000423 6.4e-20 101.3 144 36.1
MELO3C010458.2 Cucumis melo HOM05D000038 ORTHO05D000423 8.4e-20 100.9 141 39.0
MBI03_g05983_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000423 8.4e-20 100.9 147 39.5
HanXRQChr12g0379101 Helianthus annuus HOM05D000038 ORTHO05D000423 1.1e-19 100.5 145 35.9
CsaV3_4G028420 Cucumis sativus L. HOM05D005828 ORTHO05D006822 1.4e-19 100.1 141 38.3
MBI06_g02574_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000423 1.4e-19 100.1 149 39.6
Sopen04g007510 Solanum pennellii HOM05D000038 ORTHO05D000423 1.4e-19 100.1 144 39.6
arahy.Tifrunner.gnm1.ann1.FPVE10 Arachis hypogaea HOM05D000038 ORTHO05D000423 1.9e-19 99.8 138 40.6
CsaV3_4G028440 Cucumis sativus L. HOM05D000038 ORTHO05D000423 1.9e-19 99.8 141 38.3
Lsat_1_v5_gn_4_10681 Lactuca sativa HOM05D000038 ORTHO05D000423 1.9e-19 99.8 144 36.1
THA.LOC104817131 Tarenaya hassleriana HOM05D000038 ORTHO05D000423 1.9e-19 99.8 134 39.6
Nn5g28155 Nelumbo nucifera HOM05D000038 ORTHO05D000423 2.4e-19 99.4 135 40.0
ECA234G0999 Erigeron canadensis HOM05D000038 ORTHO05D000423 3.2e-19 99.0 144 35.4
Peaxi162Scf62146g00001 Petunia axillaris HOM05D000038 ORTHO05D000423 3.2e-19 99.0 144 34.7
VMungo1309G1683 Vigna mungo HOM05D000038 ORTHO05D000423 4.2e-19 98.6 139 39.6
arahy.Tifrunner.gnm1.ann1.DQ3LYR Arachis hypogaea HOM05D000038 ORTHO05D000423 5.4e-19 98.2 138 39.9
Sed0004933 Sechium edule HOM05D000038 ORTHO05D000423 5.4e-19 98.2 141 37.6
QL05p051411 Quercus lobata HOM05D000038 ORTHO05D000423 9.3e-19 97.4 139 38.8
QL05p051451 Quercus lobata HOM05D000038 ORTHO05D000423 9.3e-19 97.4 139 38.8
RhsimUnG0218300 Rhododendron simsii HOM05D000038 ORTHO05D000423 9.3e-19 97.4 136 36.0
CARHR217390 Cardamine hirsuta HOM05D000038 ORTHO05D000423 1.2e-18 97.1 145 37.2
Hma1.2p1_0057F.1_g031970 Hydrangea macrophylla HOM05D000038 ORTHO05D000423 1.2e-18 97.1 149 36.2
AT5G35370 Arabidopsis thaliana HOM05D000038 ORTHO05D000423 1.6e-18 96.7 148 37.2
Cpa.g.sc36.26 Carica papaya HOM05D000038 ORTHO05D000423 1.6e-18 96.7 154 37.7
Rhsim02G0073800 Rhododendron simsii HOM05D000038 ORTHO05D000423 1.6e-18 96.7 145 36.6
Aa31LG6G9150 Aethionema arabicum HOM05D000038 ORTHO05D000423 2.1e-18 96.3 147 36.1
CAN.G676.45 Capsicum annuum HOM05D000038 ORTHO05D000423 2.1e-18 96.3 144 34.7
SGA_v2.0_scaffold3G01802 Striga asiatica HOM05D000038 ORTHO05D000423 2.1e-18 96.3 144 38.9
Sp7g08290 Schrenkiella parvula HOM05D000038 ORTHO05D000423 2.7e-18 95.9 136 39.7
Phvul.009G122600 Phaseolus vulgaris HOM05D000038 ORTHO05D000423 3.5e-18 95.5 139 38.8
Hma1.2p1_2827F.1_g329140 Hydrangea macrophylla HOM05D000038 ORTHO05D000423 4.6e-18 95.1 149 35.6
SGA_v2.0_scaffold25G11104 Striga asiatica HOM05D000038 ORTHO05D000423 6.0e-18 94.7 135 38.5
Hma1.2p1_0057F.1_g031960 Hydrangea macrophylla HOM05D000038 ORTHO05D000423 1.0e-17 94.0 143 37.1
Actinidia16535 Actinidia chinensis HOM05D000038 ORTHO05D000423 1.3e-17 93.6 141 33.3
PSO170G6128 Papaver somniferum HOM05D000038 ORTHO05D000423 1.3e-17 93.6 152 36.2
QL09p048311 Quercus lobata HOM05D000038 ORTHO05D000423 1.3e-17 93.6 139 41.7
PSO528G0177 Papaver somniferum HOM05D000038 ORTHO05D000423 3.0e-17 92.4 147 37.4
Oeu053142.1 Olea europaea HOM05D000038 ORTHO05D000423 5.1e-17 91.7 147 35.4
Aqoxy5G00413 Aquilegia oxysepala HOM05D000038 ORTHO05D000423 8.7e-17 90.9 153 35.9
CsaV3_4G027530 Cucumis sativus L. HOM05D000038 ORTHO05D000423 8.7e-17 90.9 150 37.3
Nn1g08697 Nelumbo nucifera HOM05D000038 ORTHO05D000423 1.1e-16 90.5 139 37.4
Ah.05g172250 Amaranthus hybridus HOM05D000038 ORTHO05D000423 1.5e-16 90.1 136 39.0
RhsimUnG0160800 Rhododendron simsii HOM05D000038 ORTHO05D000423 1.9e-16 89.7 131 35.9
BcaC04g22007 Brassica carinata HOM05D000038 ORTHO05D000423 2.5e-16 89.4 148 35.1
BcaNung05257 Brassica carinata HOM05D000038 ORTHO05D000423 2.5e-16 89.4 148 35.1
C09p24920 Brassica napus HOM05D000038 ORTHO05D000423 2.5e-16 89.4 148 35.1
BolC9t55383H Brassica oleracea HOM05D000038 ORTHO05D000423 2.5e-16 89.4 148 35.1
RhsimUnG0095300 Rhododendron simsii HOM05D000038 ORTHO05D000423 2.5e-16 89.4 132 35.6
BraA09t37569Z Brassica rapa HOM05D000038 ORTHO05D000423 3.3e-16 89.0 148 35.1
A09p19550 Brassica napus HOM05D000038 ORTHO05D000423 4.3e-16 88.6 148 35.1
BcaB07g31086 Brassica carinata HOM05D000038 ORTHO05D000423 5.6e-16 88.2 136 36.0
BcaNung05256 Brassica carinata HOM05D000038 ORTHO05D000423 5.6e-16 88.2 136 36.0
QL09p048339 Quercus lobata HOM05D000038 ORTHO05D000423 5.6e-16 88.2 139 38.8
QL10p039084 Quercus lobata HOM05D000038 ORTHO05D000423 5.6e-16 88.2 142 38.7
SGA_v2.0_scaffold54G19601 Striga asiatica HOM05D000038 ORTHO05D000423 5.6e-16 88.2 145 31.7
CDE03G0410 Ceratophyllum demersum HOM05D000038 ORTHO05D000423 7.3e-16 87.8 147 32.0
HanXRQChr17g0570881 Helianthus annuus HOM05D000038 ORTHO05D000423 7.3e-16 87.8 140 37.1
Rhsim02G0075000 Rhododendron simsii HOM05D000038 ORTHO05D000423 9.6e-16 87.4 99 47.5
Thhalv10027637m.g Eutrema salsugineum HOM05D000038 ORTHO05D000423 2.8e-15 85.9 136 35.3
QL10p052645 Quercus lobata HOM05D000038 ORTHO05D000423 6.2e-15 84.7 136 39.7
Migut.L00576 Erythranthe guttata HOM05D000038 ORTHO05D000423 3.1e-14 82.4 148 31.8
Sed0015092 Sechium edule HOM05D000038 ORTHO05D000423 4.0e-14 82.0 127 33.9
Zm00001eb256010 Zea mays HOM05D000038 ORTHO05D000423 5.3e-14 81.6 144 34.7
QL09p048328 Quercus lobata HOM05D000038 ORTHO05D000423 6.9e-14 81.3 139 36.7
Migut.H00810 Erythranthe guttata HOM05D000038 ORTHO05D000423 1.5e-13 80.1 139 34.5
Zm00001eb256030 Zea mays HOM05D000038 ORTHO05D000423 2.0e-13 79.7 144 34.0
Gohir.A08G017008 Gossypium hirsutum HOM05D000038 ORTHO05D000423 7.6e-13 77.8 113 38.9
Rhsim02G0072500 Rhododendron simsii HOM05D000038 ORTHO05D000423 2.2e-12 76.3 81 46.9
Gorai.004G024400 Gossypium raimondii HOM05D000038 ORTHO05D000423 1.4e-11 73.6 113 37.2
ATR0684G151 Amborella trichopoda HOM05D000038 ORTHO05D000423 5.4e-11 71.6 139 34.5
Cpa.g.sc37.80 Carica papaya HOM05D000038 ORTHO05D000423 7.1e-11 71.2 71 52.1
Os09g0454900 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000423 1.8e-09 66.6 148 29.7
Os02g0767400 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000423 1.1e-08 63.9 139 30.9
HPP92_026347 Vanilla planifolia HOM05D000038 ORTHO05D000423 2.5e-08 62.8 139 29.5
Duzib168G0593 Durio zibethinus HOM05D000038 ORTHO05D000423 5.6e-08 61.6 105 31.4


User provided reference genes

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