Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 3.6e-66 254.6 115 100.0
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 2.4e-33 145.6 68 97.1
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 2.0e-32 142.5 67 97.0
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 4.9e-31 137.9 68 91.2
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 5.5e-30 134.4 68 89.7
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 5.5e-30 134.4 68 89.7
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 5.5e-30 134.4 68 89.7
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 2.1e-29 132.5 68 88.2
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 2.7e-29 132.1 68 88.2
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 6.0e-29 131.0 68 86.8
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 3.0e-28 128.6 68 85.3
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 3.9e-28 128.3 68 83.8
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 1.1e-27 126.7 68 82.4
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 1.5e-27 126.3 68 82.4
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 1.9e-27 125.9 68 83.8
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 1.9e-27 125.9 68 79.4
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 2.5e-27 125.6 68 79.4
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 2.5e-27 125.6 68 80.9
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 2.5e-27 125.6 68 80.9
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 3.3e-27 125.2 68 79.4
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 3.3e-27 125.2 68 79.4
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 3.3e-27 125.2 68 79.4
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 3.3e-27 125.2 68 79.4
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 3.3e-27 125.2 68 79.4
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 3.3e-27 125.2 68 82.4
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 3.3e-27 125.2 68 80.9
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 3.3e-27 125.2 68 80.9
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 3.3e-27 125.2 68 82.4
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 5.7e-27 124.4 68 79.4
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 5.7e-27 124.4 68 80.9
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 7.4e-27 124.0 68 80.9
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 7.4e-27 124.0 68 80.9
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 7.4e-27 124.0 68 80.9
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 9.6e-27 123.6 68 79.4
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 9.6e-27 123.6 68 79.4
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 9.6e-27 123.6 68 80.9
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 1.3e-26 123.2 68 79.4
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 1.3e-26 123.2 68 79.4
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 1.3e-26 123.2 68 79.4
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 1.3e-26 123.2 68 79.4
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 1.3e-26 123.2 68 79.4
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 1.3e-26 123.2 68 79.4
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 1.3e-26 123.2 70 77.1
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 1.3e-26 123.2 68 79.4
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 1.6e-26 122.9 68 77.9
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 1.6e-26 122.9 68 79.4
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 1.6e-26 122.9 68 82.4
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 1.6e-26 122.9 68 79.4
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 2.1e-26 122.5 68 79.4
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 2.1e-26 122.5 70 75.7
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 2.1e-26 122.5 68 76.5
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 2.1e-26 122.5 68 77.9
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 2.1e-26 122.5 68 77.9
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 2.1e-26 122.5 68 80.9
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 2.1e-26 122.5 68 76.5
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 2.1e-26 122.5 68 76.5
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 2.1e-26 122.5 68 80.9
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 2.8e-26 122.1 68 77.9
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 2.8e-26 122.1 68 77.9
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 2.8e-26 122.1 65 80.0
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 3.7e-26 121.7 68 76.5
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 3.7e-26 121.7 68 79.4
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 3.7e-26 121.7 68 79.4
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 3.7e-26 121.7 68 77.9
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 4.8e-26 121.3 68 73.5
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 6.3e-26 120.9 68 77.9
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 8.2e-26 120.6 64 81.2
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 8.2e-26 120.6 68 77.9
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 1.1e-25 120.2 68 77.9
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 1.1e-25 120.2 68 76.5
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 1.1e-25 120.2 68 76.5
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 1.4e-25 119.8 64 78.1
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 1.8e-25 119.4 68 75.0
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 2.4e-25 119.0 68 76.5
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 2.4e-25 119.0 68 75.0
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 4.1e-25 118.2 68 79.4
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 4.1e-25 118.2 68 79.4
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 4.1e-25 118.2 68 76.5
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 5.3e-25 117.9 68 75.0
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 5.3e-25 117.9 68 76.5
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 5.3e-25 117.9 68 73.5
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 9.0e-25 117.1 68 75.0
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 9.0e-25 117.1 68 75.0
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 9.0e-25 117.1 68 76.5
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 9.0e-25 117.1 68 75.0
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 9.0e-25 117.1 68 75.0
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 9.0e-25 117.1 68 76.5
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 1.2e-24 116.7 68 75.0
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 1.2e-24 116.7 68 75.0
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 2.0e-24 115.9 68 76.5
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 2.6e-24 115.5 68 72.1
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 2.6e-24 115.5 64 76.6
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 3.4e-24 115.2 68 70.6
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 5.9e-24 114.4 68 75.0
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 5.9e-24 114.4 68 75.0
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 7.6e-24 114.0 68 70.6
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 7.6e-24 114.0 68 73.5
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 2.2e-23 112.5 68 72.1
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 2.2e-23 112.5 68 72.1
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 2.9e-23 112.1 70 70.0
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 3.8e-23 111.7 68 73.5
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 3.8e-23 111.7 68 69.1
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 5.0e-23 111.3 68 73.5
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 5.0e-23 111.3 68 69.1
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 6.5e-23 110.9 68 72.1
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 6.5e-23 110.9 63 74.6
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 1.1e-22 110.2 64 75.0
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 1.1e-22 110.2 64 75.0
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 3.2e-22 108.6 68 70.6
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 3.2e-22 108.6 64 71.9
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 3.2e-22 108.6 68 72.1
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 4.6e-21 104.8 67 68.7
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 3.0e-20 102.1 63 69.8
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 5.1e-20 101.3 61 68.9
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.6e-18 96.3 61 65.6
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 2.0e-16 89.4 64 57.8
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 6.5e-15 84.3 69 47.8
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 6.5e-15 84.3 64 57.8
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 3.6e-13 78.6 41 80.5
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 4.3e-11 71.6 68 47.1
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.7e-07 59.7 68 39.7
RcHm_v2.0_Chr2g0132461 Rosa chinensis HOM05D001129 ORTHO05D003814 3.2e-06 55.5 48 54.2


User provided reference genes

Program Settings