Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0226071 Rosa chinensis HOM05D000007 ORTHO05D000017 6.4e-81 303.9 141 100.0
RcHm_v2.0_Chr7g0226091 Rosa chinensis HOM05D000007 ORTHO05D000017 2.2e-73 278.9 142 91.5
RcHm_v2.0_Chr7g0226431 Rosa chinensis HOM05D000007 ORTHO05D000017 4.5e-58 228.0 142 73.9
RcHm_v2.0_Chr7g0226441 Rosa chinensis HOM05D000007 ORTHO05D000017 3.5e-55 218.4 142 73.2
RcHm_v2.0_Chr1g0361131 Rosa chinensis HOM05D000007 ORTHO05D000017 3.3e-45 185.3 153 59.5
RcHm_v2.0_Chr1g0380591 Rosa chinensis HOM05D000007 ORTHO05D000017 9.6e-45 183.7 146 59.6
RcHm_v2.0_Chr1g0380601 Rosa chinensis HOM05D000007 ORTHO05D000017 9.6e-45 183.7 147 60.5
FAN18G1100 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.9e-41 171.4 145 60.0
FAN13G2247 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.5e-37 159.8 145 56.6
FAN08G2632 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.1e-36 156.0 106 67.0
FAN18G3605 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.3e-36 154.5 106 66.0
FvH4_5g37874 Fragaria vesca HOM05D000007 ORTHO05D000017 1.1e-35 153.7 106 66.0
RcHm_v2.0_Chr5g0076141 Rosa chinensis HOM05D000007 ORTHO05D000017 2.5e-32 142.5 141 51.1
FAN18G4057 Fragaria x ananassa HOM05D001729 ORTHO05D001155 3.9e-30 135.2 84 70.2
FvH4_3g42450 Fragaria vesca HOM05D000007 ORTHO05D000017 2.5e-29 132.5 152 49.3
FvH4_3g42360 Fragaria vesca HOM05D000007 ORTHO05D000017 8.2e-28 127.5 141 47.5
FAN11G0597 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.2e-28 127.5 141 47.5
FAN28G1795 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.2e-28 127.5 141 47.5
RcHm_v2.0_Chr5g0076091 Rosa chinensis HOM05D000007 ORTHO05D000017 1.4e-27 126.7 144 47.2
RcHm_v2.0_Chr5g0076131 Rosa chinensis HOM05D000007 ORTHO05D000017 2.4e-27 125.9 143 46.9
RcHm_v2.0_Chr5g0076101 Rosa chinensis HOM05D000007 ORTHO05D000017 4.1e-27 125.2 161 44.1
FvH4_3g42304 Fragaria vesca HOM05D000007 ORTHO05D000017 5.9e-26 121.3 144 43.1
FAN11G0172 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.9e-26 121.3 144 43.8
FAN11G3870 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.9e-26 121.3 144 43.1
FAN16G0234 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.9e-26 121.3 144 43.1
FAN28G0209 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.9e-26 121.3 144 43.1
FvH4_3g42321 Fragaria vesca HOM05D000007 ORTHO05D000017 7.7e-26 120.9 144 43.8
RcHm_v2.0_Chr5g0075691 Rosa chinensis HOM05D000007 ORTHO05D000017 7.7e-26 120.9 132 52.3
RcHm_v2.0_Chr5g0075931 Rosa chinensis HOM05D000007 ORTHO05D000017 6.5e-25 117.9 149 47.0
RcHm_v2.0_Chr5g0076031 Rosa chinensis HOM05D000007 ORTHO05D000017 5.5e-24 114.8 144 45.1
FvH4_3g42470 Fragaria vesca HOM05D000007 ORTHO05D000017 3.6e-23 112.1 145 39.3
RcHm_v2.0_Chr5g0076061 Rosa chinensis HOM05D000007 ORTHO05D000017 3.6e-23 112.1 150 44.0
FAN21G0381 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.4e-22 110.2 141 44.7
FAN16G3706 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.7e-22 107.8 146 42.5
FvH4_3g42460 Fragaria vesca HOM05D000007 ORTHO05D000017 4.4e-21 105.1 147 40.1
RcHm_v2.0_Chr5g0076151 Rosa chinensis HOM05D000007 ORTHO05D000017 5.7e-21 104.8 148 41.2
FvH4_3g41771 Fragaria vesca HOM05D000007 ORTHO05D000017 4.8e-20 101.7 115 48.7
FAN21G2880 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.8e-20 101.7 147 40.1
RcHm_v2.0_Chr5g0075941 Rosa chinensis HOM05D000007 ORTHO05D000017 1.8e-19 99.8 143 41.3
FAN21G3856 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.2e-18 97.1 143 39.9
FAN11G1339 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.5e-18 96.7 112 48.2
FAN16G0014 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.0e-18 96.3 100 52.0
FAN11G1511 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.5e-18 95.1 112 47.3
FvH4_3g42301 Fragaria vesca HOM05D000007 ORTHO05D000017 7.7e-18 94.4 115 46.1
FAN02G3183 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-17 93.6 134 38.1
FvH4_3g42303 Fragaria vesca HOM05D000007 ORTHO05D000017 2.2e-17 92.8 116 45.7
FvH4_1g08100 Fragaria vesca HOM05D000007 ORTHO05D000017 5.0e-17 91.7 130 39.2
FAN09G0758 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.5e-17 91.3 116 39.7
Prupe.2G278600 Prunus persica HOM05D000007 ORTHO05D000017 3.2e-16 89.0 150 34.7
FvH4_3g41860 Fragaria vesca HOM05D000007 ORTHO05D025461 2.7e-15 85.9 158 32.9
RcHm_v2.0_Chr5g0075701 Rosa chinensis HOM05D000007 ORTHO05D025461 1.0e-14 84.0 141 36.2
FAN21G0929 Fragaria x ananassa HOM05D000007 ORTHO05D025461 1.4e-14 83.6 128 33.6
Prupe.2G278400 Prunus persica HOM05D000007 ORTHO05D000017 1.8e-14 83.2 147 34.0
FAN16G0375 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.7e-14 81.3 91 47.3
FvH4_3g42302 Fragaria vesca HOM05D000007 ORTHO05D000017 8.8e-14 80.9 97 48.5
FAN21G3249 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-13 80.5 98 37.8
FAN11G3926 Fragaria x ananassa HOM05D000007 ORTHO05D025461 2.0e-13 79.7 158 31.0
RcHm_v2.0_Chr5g0075921 Rosa chinensis HOM05D000007 ORTHO05D000017 2.2e-12 76.3 142 35.9
FAN25G1368 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.2e-12 74.3 94 45.7
FAN25G0715 Fragaria x ananassa HOM05D000007 ORTHO05D025461 3.5e-10 68.9 97 34.0
RcHm_v2.0_Chr2g0107811 Rosa chinensis HOM05D000007 ORTHO05D000017 1.7e-09 66.6 140 33.6
Manes.15G021100 Manihot esculenta HOM05D000007 ORTHO05D000017 1.9e-08 63.2 130 33.1
RcHm_v2.0_Chr2g0107891 Rosa chinensis HOM05D000007 ORTHO05D000017 3.2e-08 62.4 140 32.9
FAN16G0625 Fragaria x ananassa HOM05D000007 ORTHO05D045626 7.2e-08 61.2 83 37.3
FAN21G0670 Fragaria x ananassa HOM05D000870 ORTHO05D000715 7.2e-08 61.2 99 43.4
RcHm_v2.0_Chr2g0107801 Rosa chinensis HOM05D000007 ORTHO05D000017 1.2e-07 60.5 140 30.0
TPR.G29964 Trifolium pratense HOM05D000007 ORTHO05D000017 1.6e-07 60.1 128 28.1
FAN21G1277 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.6e-07 58.9 75 38.7
RcHm_v2.0_Chr2g0109731 Rosa chinensis HOM05D000007 ORTHO05D000017 3.6e-07 58.9 155 31.0
QL05p031430 Quercus lobata HOM05D000007 ORTHO05D000017 4.7e-07 58.5 87 36.8
DCAR_019224 Daucus carota HOM05D000007 ORTHO05D000017 8.0e-07 57.8 128 25.0
FvH4_1g18391 Fragaria vesca HOM05D000007 ORTHO05D000017 3.0e-06 55.8 99 36.4
RcHm_v2.0_Chr5g0059211 Rosa chinensis HOM05D000007 ORTHO05D000017 3.0e-06 55.8 116 31.9
COL.COLO4_20224 Corchorus olitorius HOM05D000007 ORTHO05D000521 4.0e-06 55.5 114 28.1
FvH4_2g36701 Fragaria vesca HOM05D000007 ORTHO05D000017 4.0e-06 55.5 124 34.7
FvH4_3g42582 Fragaria vesca HOM05D000007 ORTHO05D045626 5.2e-06 55.1 76 34.2
Medtr2g046830 Medicago truncatula HOM05D000007 ORTHO05D000017 5.2e-06 55.1 84 31.0
Medtr2g046900 Medicago truncatula HOM05D000007 ORTHO05D000017 5.2e-06 55.1 115 28.7
PSO339G2408 Papaver somniferum HOM05D000007 ORTHO05D000017 5.2e-06 55.1 87 29.9
Prupe.6G215000 Prunus persica HOM05D000007 ORTHO05D335830 5.2e-06 55.1 113 36.3
FvH4_3g44660 Fragaria vesca HOM05D000007 ORTHO05D000017 6.7e-06 54.7 102 41.2
Lj6g0010833 Lotus japonicus HOM05D000007 ORTHO05D000017 6.7e-06 54.7 72 33.3
Medtr2g047832 Medicago truncatula HOM05D000007 ORTHO05D000017 6.7e-06 54.7 84 32.1
RcHm_v2.0_Chr2g0107821 Rosa chinensis HOM05D000007 ORTHO05D000017 6.7e-06 54.7 140 30.0
Prupe.6G214900 Prunus persica HOM05D000007 ORTHO05D000017 8.8e-06 54.3 151 31.1


User provided reference genes

Program Settings