Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0225831 Rosa chinensis HOM05D000476 ORTHO05D025752 1.6e-28 128.6 61 100.0
RcHm_v2.0_Chr2g0098421 Rosa chinensis HOM05D000476 ORTHO05D005719 2.1e-12 75.1 46 82.6
FAN26G0730 Fragaria x ananassa HOM05D000476 ORTHO05D005719 4.6e-12 73.9 46 80.4
FvH4_1g11140 Fragaria vesca HOM05D000476 ORTHO05D005719 1.4e-11 72.4 46 78.3
FAN19G2503 Fragaria x ananassa HOM05D000476 ORTHO05D005719 1.4e-11 72.4 46 78.3
FAN28G1417 Fragaria x ananassa HOM05D000476 ORTHO05D005719 1.4e-11 72.4 46 78.3
TWI31G0618 Tripterygium wilfordii HOM05D000476 ORTHO05D005719 2.3e-11 71.6 46 73.9
FAN23G2355 Fragaria x ananassa HOM05D000476 ORTHO05D005719 3.9e-11 70.9 46 78.3
FvH4_2g15580 Fragaria vesca HOM05D000476 ORTHO05D005719 3.3e-10 67.8 60 60.0
FAN15G2981 Fragaria x ananassa HOM05D000476 ORTHO05D005719 3.3e-10 67.8 60 60.0
FAN20G0044 Fragaria x ananassa HOM05D000476 ORTHO05D005719 3.3e-10 67.8 60 60.0
FAN24G1070 Fragaria x ananassa HOM05D000476 ORTHO05D005719 3.3e-10 67.8 60 60.0
Sabra09G0106700 Salix brachista HOM05D000476 ORTHO05D005719 4.4e-10 67.4 45 73.3
CiPaw.05G084600 Carya illinoinensis HOM05D000476 ORTHO05D005719 5.7e-10 67.0 45 73.3
DCAR_022959 Daucus carota HOM05D000476 ORTHO05D005719 5.7e-10 67.0 56 62.5
Dinv41922 Davidia involucrata HOM05D000476 ORTHO05D005719 5.7e-10 67.0 45 71.1
Gohir.D03G005900 Gossypium hirsutum HOM05D000476 ORTHO05D005719 5.7e-10 67.0 45 73.3
Gorai.003G006300 Gossypium raimondii HOM05D000476 ORTHO05D005719 5.7e-10 67.0 45 73.3
Prupe.7G174500 Prunus persica HOM05D000476 ORTHO05D005719 5.7e-10 67.0 46 69.6
GSVIVG01023992001 Vitis vinifera HOM05D000476 ORTHO05D005719 5.7e-10 67.0 45 73.3
Aqoxy5G01114 Aquilegia oxysepala HOM05D000476 ORTHO05D005719 7.4e-10 66.6 45 71.1
Dinv14122 Davidia involucrata HOM05D000476 ORTHO05D005719 7.4e-10 66.6 45 71.1
QL11p051500 Quercus lobata HOM05D000476 ORTHO05D005719 7.4e-10 66.6 45 71.1
RcHm_v2.0_Chr6g0278761 Rosa chinensis HOM05D000476 ORTHO05D005719 7.4e-10 66.6 60 58.3
Thecc.02G056200 Theobroma cacao HOM05D000476 ORTHO05D005719 7.4e-10 66.6 45 71.1
Ciclev10030360m.g Citrus clementina HOM05D000476 ORTHO05D005719 9.7e-10 66.2 64 56.2
Nitab4.5_0003698g0070 Nicotiana tabacum HOM05D000476 ORTHO05D005719 9.7e-10 66.2 56 60.7
Prupe.8G168100 Prunus persica HOM05D000476 ORTHO05D005719 9.7e-10 66.2 45 73.3
Cfa005281 Carpinus fangiana HOM05D000476 ORTHO05D005719 1.3e-09 65.9 45 68.9
COL.COLO4_17370 Corchorus olitorius HOM05D000476 ORTHO05D005719 1.3e-09 65.9 45 68.9
COL.COLO4_22490 Corchorus olitorius HOM05D000476 ORTHO05D005719 1.3e-09 65.9 42 76.2
Haze_02112 Corylus avellana HOM05D000476 ORTHO05D005719 1.3e-09 65.9 45 68.9
MELO3C020830.2 Cucumis melo HOM05D000476 ORTHO05D005719 1.3e-09 65.9 45 73.3
CsaV3_2G016220 Cucumis sativus L. HOM05D000476 ORTHO05D005719 1.3e-09 65.9 45 73.3
MD05G1124400 Malus domestica HOM05D000476 ORTHO05D005719 1.3e-09 65.9 45 71.1
Actinidia20522 Actinidia chinensis HOM05D000476 ORTHO05D005719 1.7e-09 65.5 45 68.9
Duzib147G1555 Durio zibethinus HOM05D000476 ORTHO05D005719 1.7e-09 65.5 45 71.1
Nn6g31926 Nelumbo nucifera HOM05D000476 ORTHO05D005719 1.7e-09 65.5 46 67.4
QL06p051967 Quercus lobata HOM05D000476 ORTHO05D005719 1.7e-09 65.5 45 71.1
Cpa.g.sc20.106 Carica papaya HOM05D000476 ORTHO05D005719 2.2e-09 65.1 45 71.1
ClCG02G012060 Citrullus lanatus HOM05D000476 ORTHO05D005719 2.2e-09 65.1 45 71.1
Duzib132G1235 Durio zibethinus HOM05D000476 ORTHO05D005719 2.2e-09 65.1 45 66.7
Manes.01G150500 Manihot esculenta HOM05D000476 ORTHO05D005719 2.2e-09 65.1 45 71.1
Manes.04G071400 Manihot esculenta HOM05D000476 ORTHO05D005719 2.2e-09 65.1 45 71.1
Nn5g30832 Nelumbo nucifera HOM05D000476 ORTHO05D005719 2.2e-09 65.1 45 68.9
Nitab4.5_0004864g0010 Nicotiana tabacum HOM05D000476 ORTHO05D005719 2.2e-09 65.1 45 71.1
Potri.009G137500 Populus trichocarpa HOM05D000476 ORTHO05D005719 2.2e-09 65.1 45 71.1
Cfa007026 Carpinus fangiana HOM05D000476 ORTHO05D005719 2.8e-09 64.7 45 71.1
MD10G1127200 Malus domestica HOM05D000476 ORTHO05D005719 2.8e-09 64.7 45 68.9
PGR142G3087 Punica granatum HOM05D000476 ORTHO05D005719 2.8e-09 64.7 45 73.3
Sabra04G0119100 Salix brachista HOM05D000476 ORTHO05D005719 2.8e-09 64.7 45 73.3
TWI75G0421 Tripterygium wilfordii HOM05D000476 ORTHO05D005719 2.8e-09 64.7 45 68.9
Cc09_g10250 Coffea canephora HOM05D000476 ORTHO05D005719 3.7e-09 64.3 42 73.8
Hma1.2p1_0163F.1_g072630 Hydrangea macrophylla HOM05D000476 ORTHO05D005719 3.7e-09 64.3 46 69.6
Potri.004G177200 Populus trichocarpa HOM05D000476 ORTHO05D005719 3.7e-09 64.3 45 71.1
Sed0017619 Sechium edule HOM05D000476 ORTHO05D005719 3.7e-09 64.3 42 73.8
CSS0012841 Camellia sinensis var. sinensis HOM05D000476 ORTHO05D005719 4.8e-09 63.9 45 66.7
FAN27G1175 Fragaria x ananassa HOM05D000476 ORTHO05D005719 4.8e-09 63.9 60 56.7
Lj9A397G33 Lonicera japonica HOM05D000476 ORTHO05D005719 4.8e-09 63.9 46 67.4
Lj9C400T3 Lonicera japonica HOM05D000476 ORTHO05D005719 4.8e-09 63.9 46 67.4
Thecc.01G012000 Theobroma cacao HOM05D000476 ORTHO05D005719 4.8e-09 63.9 45 71.1
CANSAT01G2246 Cannabis sativa HOM05D000476 ORTHO05D005719 6.3e-09 63.5 42 71.4
Dinv40142 Davidia involucrata HOM05D000476 ORTHO05D005719 6.3e-09 63.5 45 68.9
Duzib248G0030 Durio zibethinus HOM05D000476 ORTHO05D005719 6.3e-09 63.5 45 66.7
HanXRQChr10g0300811 Helianthus annuus HOM05D000476 ORTHO05D005719 6.3e-09 63.5 45 68.9
Lsat_1_v5_gn_4_71841 Lactuca sativa HOM05D000476 ORTHO05D005719 6.3e-09 63.5 45 68.9
TAR381G1494 Trochodendron aralioides HOM05D000476 ORTHO05D005719 6.3e-09 63.5 45 68.9
TAR381G1633 Trochodendron aralioides HOM05D000476 ORTHO05D005719 6.3e-09 63.5 45 68.9
Gohir.A02G173900 Gossypium hirsutum HOM05D000476 ORTHO05D005719 8.2e-09 63.2 45 68.9
Peaxi162Scf00362g00535 Petunia axillaris HOM05D000476 ORTHO05D005719 8.2e-09 63.2 45 66.7
Rhsim11G0193200 Rhododendron simsii HOM05D000476 ORTHO05D005719 8.2e-09 63.2 45 66.7
VMungo0720G1528 Vigna mungo HOM05D000476 ORTHO05D005719 8.2e-09 63.2 45 68.9
ECA234G3651 Erigeron canadensis HOM05D000476 ORTHO05D005719 1.1e-08 62.8 42 73.8
Eucgr.I01453 Eucalyptus grandis HOM05D000476 ORTHO05D005719 1.1e-08 62.8 45 66.7
PSO170G5898 Papaver somniferum HOM05D000476 ORTHO05D005719 1.1e-08 62.8 45 64.4
PSO210G5945 Papaver somniferum HOM05D000476 ORTHO05D005719 1.1e-08 62.8 45 64.4
Cpa.g.sc6.308 Carica papaya HOM05D000476 ORTHO05D005719 1.4e-08 62.4 45 64.4
Gorai.002G199800 Gossypium raimondii HOM05D000476 ORTHO05D005719 1.8e-08 62.0 45 66.7
Manes.02G109900 Manihot esculenta HOM05D000476 ORTHO05D005719 1.8e-08 62.0 45 68.9
Solyc01g111740.3 Solanum lycopersicum HOM05D000476 ORTHO05D005719 1.8e-08 62.0 45 64.4
Sopen01g053780 Solanum pennellii HOM05D000476 ORTHO05D005719 1.8e-08 62.0 45 64.4
PGSC0003DMG400018042 Solanum tuberosum HOM05D000476 ORTHO05D005719 1.8e-08 62.0 45 64.4
Glyma.20G106700 Glycine max HOM05D000476 ORTHO05D005719 2.4e-08 61.6 45 66.7
Medtr1g112850 Medicago truncatula HOM05D000476 ORTHO05D005719 2.4e-08 61.6 45 66.7
Hund06447 Selenicereus undatus HOM05D000476 ORTHO05D005719 2.4e-08 61.6 45 66.7
THA.LOC104804321 Tarenaya hassleriana HOM05D000476 ORTHO05D005719 2.4e-08 61.6 45 64.4
vmacro02286 Vaccinium macrocarpon HOM05D000476 ORTHO05D005719 2.4e-08 61.6 45 64.4
arahy.Tifrunner.gnm1.ann1.5E9YX9 Arachis hypogaea HOM05D000476 ORTHO05D005719 3.1e-08 61.2 45 64.4
arahy.Tifrunner.gnm1.ann1.FXE6P8 Arachis hypogaea HOM05D000476 ORTHO05D005719 3.1e-08 61.2 45 64.4
CANSAT25G2378 Cannabis sativa HOM05D000476 ORTHO05D005719 3.1e-08 61.2 45 66.7
Ca_03300_v3 Cicer arietinum L. HOM05D000476 ORTHO05D005719 3.1e-08 61.2 45 66.7
Glyma.10G283000 Glycine max HOM05D000476 ORTHO05D005719 3.1e-08 61.2 45 66.7
Phvul.007G018200 Phaseolus vulgaris HOM05D000476 ORTHO05D005719 3.1e-08 61.2 45 66.7
Psat6g232560 Pisum sativum HOM05D000476 ORTHO05D005719 3.1e-08 61.2 45 66.7
CAN.G588.95 Capsicum annuum HOM05D000476 ORTHO05D005719 4.1e-08 60.8 45 62.2
Lj5g0010360 Lotus japonicus HOM05D000476 ORTHO05D005719 4.1e-08 60.8 45 66.7
Gohir.D01G161200 Gossypium hirsutum HOM05D000476 ORTHO05D005719 5.3e-08 60.5 45 64.4
Sed0002256 Sechium edule HOM05D000476 ORTHO05D005719 5.3e-08 60.5 45 66.7
TPR.G2450 Trifolium pratense HOM05D000476 ORTHO05D005719 5.3e-08 60.5 45 64.4
Zm00001eb331740 Zea mays HOM05D000476 ORTHO05D005719 5.3e-08 60.5 45 62.2
Actinidia18045 Actinidia chinensis HOM05D000476 ORTHO05D005719 6.9e-08 60.1 45 64.4
Potri.005G108400 Populus trichocarpa HOM05D000476 ORTHO05D005719 6.9e-08 60.1 42 66.7
Ah.01g023180 Amaranthus hybridus HOM05D000476 ORTHO05D005719 9.1e-08 59.7 42 66.7
Ah.01g008190 Amaranthus hybridus HOM05D000476 ORTHO05D005719 1.2e-07 59.3 45 64.4
Gohir.A01G170100 Gossypium hirsutum HOM05D000476 ORTHO05D005719 1.2e-07 59.3 45 62.2
MBI05_g00176_MAGBIO Magnolia biondii HOM05D000476 ORTHO05D005719 1.2e-07 59.3 45 62.2
Hund14172 Selenicereus undatus HOM05D000476 ORTHO05D005719 1.2e-07 59.3 56 53.6
GSVIVG01005188001 Vitis vinifera HOM05D000476 ORTHO05D005719 1.2e-07 59.3 45 64.4
GSVIVG01006889001 Vitis vinifera HOM05D000476 ORTHO05D005719 1.2e-07 59.3 45 64.4
Migut.B00063 Erythranthe guttata HOM05D000476 ORTHO05D005719 1.5e-07 58.9 45 62.2
Lalb_Chr21g0307031 Lupinus albus HOM05D000476 ORTHO05D005719 1.5e-07 58.9 45 66.7
Os09g0542500 Oryza sativa ssp. japonica HOM05D000476 ORTHO05D005719 1.5e-07 58.9 45 62.2
Sabra05G0088800 Salix brachista HOM05D000476 ORTHO05D005719 2.0e-07 58.5 42 66.7
Sc03g0003760 Simmondsia chinensis HOM05D000476 ORTHO05D005719 2.0e-07 58.5 44 68.2
EL10Ac9g21346 Beta vulgaris HOM05D000476 ORTHO05D005719 2.6e-07 58.2 45 62.2
Hma1.2p1_0561F.1_g178970 Hydrangea macrophylla HOM05D000476 ORTHO05D005719 2.6e-07 58.2 43 65.1
PGR004G2658 Punica granatum HOM05D000476 ORTHO05D006845 2.6e-07 58.2 42 59.5
HPP92_020729 Vanilla planifolia HOM05D000476 ORTHO05D005719 2.6e-07 58.2 42 66.7
MSTRG.16926 Avicennia marina HOM05D000476 ORTHO05D005719 4.5e-07 57.4 45 57.8
Prupe.7G172100 Prunus persica HOM05D000476 ORTHO05D005719 4.5e-07 57.4 46 60.9
unitig_0.g814 Utricularia gibba HOM05D000476 ORTHO05D005719 4.5e-07 57.4 45 62.2
CDE02G2797 Ceratophyllum demersum HOM05D000476 ORTHO05D005719 5.9e-07 57.0 45 60.0
AUR62013007 Chenopodium quinoa HOM05D000476 ORTHO05D005719 5.9e-07 57.0 45 60.0
Oeu029648.1 Olea europaea HOM05D000476 ORTHO05D005719 5.9e-07 57.0 44 63.6
AUR62010017 Chenopodium quinoa HOM05D000476 ORTHO05D005719 1.3e-06 55.8 45 57.8
MELO3C017591.2 Cucumis melo HOM05D000476 ORTHO05D006845 1.3e-06 55.8 42 59.5
CsaV3_4G004720 Cucumis sativus L. HOM05D000476 ORTHO05D006845 1.3e-06 55.8 42 59.5
CsaV3_UNG137060 Cucumis sativus L. HOM05D000476 ORTHO05D006845 1.3e-06 55.8 42 59.5
CsaV3_UNG144120 Cucumis sativus L. HOM05D000476 ORTHO05D006845 1.3e-06 55.8 42 59.5
CsaV3_UNG218470 Cucumis sativus L. HOM05D000476 ORTHO05D006845 1.3e-06 55.8 42 59.5
Duzib147G1476 Durio zibethinus HOM05D000476 ORTHO05D006845 1.3e-06 55.8 42 57.1
Manes.12G137100 Manihot esculenta HOM05D000476 ORTHO05D006845 1.3e-06 55.8 42 57.1
Sc03g0002200 Simmondsia chinensis HOM05D000476 ORTHO05D006845 1.3e-06 55.8 42 57.1
Potri.005G077700 Populus trichocarpa HOM05D000476 ORTHO05D006845 1.7e-06 55.5 42 59.5
Potri.007G090300 Populus trichocarpa HOM05D000476 ORTHO05D006845 1.7e-06 55.5 42 59.5
Prupe.7G174400 Prunus persica HOM05D000476 ORTHO05D005719 1.7e-06 55.5 45 60.0
PGR044G2442 Punica granatum HOM05D000476 ORTHO05D004987 1.7e-06 55.5 55 47.3
Sabra07G0074000 Salix brachista HOM05D000476 ORTHO05D006845 1.7e-06 55.5 42 59.5
Sed0021505 Sechium edule HOM05D000476 ORTHO05D006845 1.7e-06 55.5 42 57.1
Ah.03g142480 Amaranthus hybridus HOM05D000476 ORTHO05D006845 2.2e-06 55.1 42 57.1
MSTRG.19980 Avicennia marina HOM05D000476 ORTHO05D005719 2.2e-06 55.1 45 55.6
Cpa.g.sc20.235 Carica papaya HOM05D000476 ORTHO05D006845 2.2e-06 55.1 42 61.9
Atru.chr4.129 Acer truncatum HOM05D000476 ORTHO05D006845 2.9e-06 54.7 42 57.1
Atru.chr5.3386 Acer truncatum HOM05D000476 ORTHO05D005719 2.9e-06 54.7 45 57.8
Cfa002687 Carpinus fangiana HOM05D000476 ORTHO05D006845 2.9e-06 54.7 42 59.5
Haze_24958 Corylus avellana HOM05D000476 ORTHO05D006845 2.9e-06 54.7 42 59.5
Gohir.A02G144300 Gossypium hirsutum HOM05D000476 ORTHO05D006845 2.9e-06 54.7 42 57.1
Gohir.D03G036300 Gossypium hirsutum HOM05D000476 ORTHO05D006845 2.9e-06 54.7 42 57.1
Gorai.003G038100 Gossypium raimondii HOM05D000476 ORTHO05D006845 2.9e-06 54.7 42 57.1
Nn5g29062 Nelumbo nucifera HOM05D000476 ORTHO05D006845 2.9e-06 54.7 42 59.5
QL06p049996 Quercus lobata HOM05D000476 ORTHO05D006845 2.9e-06 54.7 42 59.5
TWI74G0131 Tripterygium wilfordii HOM05D000476 ORTHO05D006845 2.9e-06 54.7 42 59.5
TAR636G2947 Trochodendron aralioides HOM05D000476 ORTHO05D025752 2.9e-06 54.7 38 68.4
EL10Ac6g13329 Beta vulgaris HOM05D000476 ORTHO05D005719 3.8e-06 54.3 42 61.9
ClCG07G009590 Citrullus lanatus HOM05D000476 ORTHO05D006845 3.8e-06 54.3 42 54.8
Lj2A484T43 Lonicera japonica HOM05D000476 ORTHO05D005719 3.8e-06 54.3 42 57.1
PSO133G0086 Papaver somniferum HOM05D000476 ORTHO05D006845 3.8e-06 54.3 45 51.1
Thecc.01G104600 Theobroma cacao HOM05D000476 ORTHO05D006845 3.8e-06 54.3 42 54.8
TWI53G0988 Tripterygium wilfordii HOM05D000476 ORTHO05D006845 3.8e-06 54.3 42 59.5
CSS0050365 Camellia sinensis var. sinensis HOM05D000476 ORTHO05D006845 5.0e-06 53.9 42 54.8
Dinv25416 Davidia involucrata HOM05D000476 ORTHO05D004987 5.0e-06 53.9 57 45.6
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 5.0e-06 53.9 45 51.1
ECA246G4469 Erigeron canadensis HOM05D000476 ORTHO05D006845 5.0e-06 53.9 42 54.8
HanXRQChr15g0470911 Helianthus annuus HOM05D000476 ORTHO05D006845 5.0e-06 53.9 42 54.8
Lsat_1_v5_gn_5_42800 Lactuca sativa HOM05D000476 ORTHO05D006845 5.0e-06 53.9 42 54.8
ATR0661G123 Amborella trichopoda HOM05D000476 ORTHO05D005719 6.5e-06 53.5 45 60.0
A01p00670 Brassica napus HOM05D000476 ORTHO05D006845 6.5e-06 53.5 42 57.1
BraA01t00073Z Brassica rapa HOM05D000476 ORTHO05D006845 6.5e-06 53.5 42 57.1
CARHR246920 Cardamine hirsuta HOM05D000476 ORTHO05D006845 6.5e-06 53.5 42 57.1
Cfa013432 Carpinus fangiana HOM05D000476 ORTHO05D004987 6.5e-06 53.5 45 55.6
CiPaw.04G097200 Carya illinoinensis HOM05D000476 ORTHO05D006845 6.5e-06 53.5 42 59.5
Haze_21986 Corylus avellana HOM05D000476 ORTHO05D004987 6.5e-06 53.5 45 55.6
Haze_21989 Corylus avellana HOM05D000476 ORTHO05D004987 6.5e-06 53.5 45 55.6
Thhalv10024607m.g Eutrema salsugineum HOM05D000476 ORTHO05D006845 6.5e-06 53.5 42 57.1
HanXRQChr05g0148541 Helianthus annuus HOM05D000476 ORTHO05D006845 6.5e-06 53.5 42 54.8
Manes.14G158839 Manihot esculenta HOM05D000476 ORTHO05D004987 6.5e-06 53.5 45 53.3
Sp7g36110 Schrenkiella parvula HOM05D000476 ORTHO05D006845 6.5e-06 53.5 42 57.1
Sc18g0006370 Simmondsia chinensis HOM05D000476 ORTHO05D005719 6.5e-06 53.5 45 60.0
Eucgr.I00421 Eucalyptus grandis HOM05D000476 ORTHO05D006845 8.5e-06 53.1 42 54.8
Nn2g12746 Nelumbo nucifera HOM05D000476 ORTHO05D004987 8.5e-06 53.1 55 43.6
Os05g0172300 Oryza sativa ssp. japonica HOM05D000476 ORTHO05D006845 8.5e-06 53.1 42 52.4
SEGI_17897 Sequoiadendron giganteum HOM05D000476 ORTHO05D005719 8.5e-06 53.1 45 55.6
TAR628G1288 Trochodendron aralioides HOM05D000476 ORTHO05D006845 8.5e-06 53.1 42 54.8


User provided reference genes

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