Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0224921 Rosa chinensis HOM05D060373 ORTHO05D035063 2.2e-47 191.8 89 100.0
RcHm_v2.0_Chr6g0254991 Rosa chinensis HOM05D060373 ORTHO05D035063 2.4e-33 145.2 69 92.8
RcHm_v2.0_Chr6g0286581 Rosa chinensis HOM05D002740 ORTHO05D003126 1.2e-16 89.7 89 58.4
FvH4_2g20480 Fragaria vesca HOM05D002740 ORTHO05D003126 5.9e-16 87.4 89 59.6
FAN15G0236 Fragaria x ananassa HOM05D002740 ORTHO05D003126 5.9e-16 87.4 89 59.6
FAN24G0357 Fragaria x ananassa HOM05D002740 ORTHO05D003126 5.9e-16 87.4 89 59.6
FAN27G2178 Fragaria x ananassa HOM05D002740 ORTHO05D003126 5.9e-16 87.4 89 59.6
Prupe.8G215100 Prunus persica HOM05D002740 ORTHO05D003126 5.7e-11 70.9 88 47.7
Lj1A74G101 Lonicera japonica HOM05D002740 ORTHO05D003126 8.3e-10 67.0 91 42.9
Cfa002487 Carpinus fangiana HOM05D002740 ORTHO05D003126 1.1e-09 66.6 93 45.2
GSVIVG01028433001 Vitis vinifera HOM05D002740 ORTHO05D003126 3.1e-09 65.1 92 42.4
CSS0008677 Camellia sinensis var. sinensis HOM05D002740 ORTHO05D003126 5.4e-09 64.3 87 43.7
Ciclev10023610m.g Citrus clementina HOM05D002740 ORTHO05D003126 9.2e-09 63.5 84 47.6
Actinidia37554 Actinidia chinensis HOM05D002740 ORTHO05D003126 2.0e-08 62.4 91 41.8
Manes.13G039600 Manihot esculenta HOM05D002740 ORTHO05D003126 2.0e-08 62.4 87 46.0
Cpa.g.sc87.32 Carica papaya HOM05D002740 ORTHO05D003126 2.7e-08 62.0 87 46.0
Haze_24709 Corylus avellana HOM05D002740 ORTHO05D003126 2.7e-08 62.0 88 43.2
Aqoxy5G00131 Aquilegia oxysepala HOM05D002740 ORTHO05D003126 7.8e-08 60.5 87 42.5
CiPaw.03G271200 Carya illinoinensis HOM05D002740 ORTHO05D003126 7.8e-08 60.5 89 42.7
vmacro02711 Vaccinium macrocarpon HOM05D002740 ORTHO05D003126 1.3e-07 59.7 83 44.6
CAN.G536.13 Capsicum annuum HOM05D002740 ORTHO05D003126 1.7e-07 59.3 91 40.7
Sopen09g025670 Solanum pennellii HOM05D002740 ORTHO05D003126 1.7e-07 59.3 91 39.6
Nitab4.5_0000845g0210 Nicotiana tabacum HOM05D002740 ORTHO05D003126 2.3e-07 58.9 91 41.8
PGSC0003DMG400008580 Solanum tuberosum HOM05D002740 ORTHO05D003126 2.3e-07 58.9 91 39.6
Dinv19266 Davidia involucrata HOM05D002740 ORTHO05D003126 2.9e-07 58.5 92 42.4
Nitab4.5_0002435g0030 Nicotiana tabacum HOM05D002740 ORTHO05D003126 5.0e-07 57.8 91 42.9
TWI75G0335 Tripterygium wilfordii HOM05D002740 ORTHO05D003126 5.0e-07 57.8 88 43.2
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 6.6e-07 57.4 84 42.9
arahy.Tifrunner.gnm1.ann1.JB472D Arachis hypogaea HOM05D002740 ORTHO05D003126 8.6e-07 57.0 87 42.5
Lsat_1_v5_gn_9_11541 Lactuca sativa HOM05D002740 ORTHO05D003126 8.6e-07 57.0 87 37.9
Lj2A46T69 Lonicera japonica HOM05D002740 ORTHO05D003126 1.1e-06 56.6 87 40.2
Nitab4.5_0000841g0010 Nicotiana tabacum HOM05D002740 ORTHO05D003126 1.1e-06 56.6 88 42.0
Nitab4.5_0002088g0010 Nicotiana tabacum HOM05D002740 ORTHO05D003126 1.1e-06 56.6 88 42.0
Atru.chr2.1110 Acer truncatum HOM05D002740 ORTHO05D003126 2.5e-06 55.5 88 42.0
arahy.Tifrunner.gnm1.ann1.33UQPP Arachis hypogaea HOM05D002740 ORTHO05D003126 2.5e-06 55.5 87 41.4
Ciclev10030905m.g Citrus clementina HOM05D002740 ORTHO05D003126 2.5e-06 55.5 87 41.4
Oeu052082.1 Olea europaea HOM05D002740 ORTHO05D003126 2.5e-06 55.5 91 40.7
Peaxi162Scf00043g00272 Petunia axillaris HOM05D002740 ORTHO05D003126 2.5e-06 55.5 91 39.6
Nn1g02994 Nelumbo nucifera HOM05D002740 ORTHO05D003126 4.3e-06 54.7 90 41.1
Nitab4.5_0000476g0220 Nicotiana tabacum HOM05D002740 ORTHO05D003126 4.3e-06 54.7 91 38.5
Thecc.01G249900 Theobroma cacao HOM05D002740 ORTHO05D003126 4.3e-06 54.7 85 40.0
Dinv11352 Davidia involucrata HOM05D002740 ORTHO05D035063 5.6e-06 54.3 43 58.1
Phvul.008G137801 Phaseolus vulgaris HOM05D002740 ORTHO05D003126 5.6e-06 54.3 86 41.9
Nitab4.5_0010891g0030 Nicotiana tabacum HOM05D002740 ORTHO05D003126 7.3e-06 53.9 87 40.2
QL03p029148 Quercus lobata HOM05D002740 ORTHO05D003126 7.3e-06 53.9 89 38.2
CiPaw.07G070800 Carya illinoinensis HOM05D002740 ORTHO05D003126 9.5e-06 53.5 86 41.9


User provided reference genes

Program Settings