Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 5.1e-128 461.1 230 100.0
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.1e-121 439.1 228 94.7
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 1.3e-120 436.4 228 93.9
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.0e-120 435.3 228 93.9
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 1.5e-119 433.0 228 93.9
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 4.8e-118 427.9 230 91.7
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 5.3e-117 424.5 230 91.3
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 9.7e-111 403.7 228 88.2
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 6.3e-110 401.0 228 87.7
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 7.7e-108 394.0 217 88.9
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.7e-107 392.9 264 77.3
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 2.3e-104 382.5 230 81.7
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 2.5e-103 379.0 228 79.8
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 4.3e-103 378.3 230 80.9
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 7.4e-103 377.5 231 81.0
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 3.7e-102 375.2 230 80.0
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 4.8e-102 374.8 230 80.0
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 1.4e-101 373.2 230 79.6
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 3.1e-101 372.1 227 78.9
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 3.1e-101 372.1 227 81.5
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 3.4e-100 368.6 232 80.2
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 7.7e-100 367.5 227 80.6
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.0e-99 367.1 219 82.2
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 1.7e-99 366.3 226 80.5
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 2.9e-99 365.5 222 81.1
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 6.5e-99 364.4 219 81.7
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 1.1e-98 363.6 219 80.8
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 2.5e-98 362.5 230 75.7
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 4.2e-98 361.7 230 77.8
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 4.2e-98 361.7 219 81.3
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 4.2e-98 361.7 230 76.1
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 5.5e-98 361.3 230 78.3
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 5.5e-98 361.3 226 79.2
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 9.4e-98 360.5 226 79.6
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.6e-97 359.8 230 74.8
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 2.1e-97 359.4 230 77.8
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 4.7e-97 358.2 227 75.3
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 6.1e-97 357.8 226 77.0
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 7.9e-97 357.5 227 74.4
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 7.9e-97 357.5 227 75.3
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 7.9e-97 357.5 226 77.4
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 1.4e-96 356.7 230 74.3
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.4e-96 356.7 230 75.7
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 1.8e-96 356.3 226 76.5
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 1.8e-96 356.3 226 76.1
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 2.3e-96 355.9 230 73.9
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 3.0e-96 355.5 230 74.3
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 3.9e-96 355.1 227 75.8
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 5.1e-96 354.8 230 73.9
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 5.1e-96 354.8 220 75.9
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 5.1e-96 354.8 227 74.0
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 5.1e-96 354.8 227 74.4
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 5.1e-96 354.8 215 80.9
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 1.1e-95 353.6 226 76.5
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.1e-95 353.6 227 78.0
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 1.1e-95 353.6 230 75.7
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 1.5e-95 353.2 221 75.6
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.5e-95 353.2 230 74.3
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 2.0e-95 352.8 224 75.4
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 2.0e-95 352.8 228 76.8
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 2.0e-95 352.8 230 74.8
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 2.6e-95 352.4 214 79.0
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 4.4e-95 351.7 223 74.4
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 5.7e-95 351.3 217 78.8
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 7.4e-95 350.9 221 75.1
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 9.7e-95 350.5 217 79.3
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 1.7e-94 349.7 224 74.6
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 2.2e-94 349.4 224 74.6
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 2.8e-94 349.0 230 74.3
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 2.8e-94 349.0 219 76.7
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 3.7e-94 348.6 230 73.9
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 6.3e-94 347.8 220 75.5
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 8.2e-94 347.4 215 77.7
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 8.2e-94 347.4 224 74.1
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.1e-93 347.1 230 73.5
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 1.8e-93 346.3 227 73.6
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.8e-93 346.3 217 77.4
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 2.4e-93 345.9 217 75.6
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 5.3e-93 344.7 228 74.6
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 5.3e-93 344.7 228 75.0
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 5.3e-93 344.7 227 74.4
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 5.3e-93 344.7 227 74.4
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 5.3e-93 344.7 227 74.0
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 7.0e-93 344.4 228 74.6
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 7.0e-93 344.4 227 74.0
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.2e-92 343.6 220 75.0
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.5e-92 343.2 224 74.1
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 2.0e-92 342.8 227 74.4
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 2.6e-92 342.4 227 73.6
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 2.6e-92 342.4 231 73.6
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 3.5e-92 342.0 220 77.3
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 7.7e-92 340.9 244 70.9
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 7.7e-92 340.9 233 72.5
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 7.7e-92 340.9 228 73.7
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 7.7e-92 340.9 214 78.0
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 7.7e-92 340.9 214 78.0
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 4.2e-90 335.1 229 72.9
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 2.1e-89 332.8 227 72.2
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 3.6e-89 332.0 225 73.3
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 6.1e-89 331.3 227 72.2
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 8.0e-89 330.9 218 71.6
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 8.0e-89 330.9 227 73.6
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 8.0e-89 330.9 212 75.5
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 6.7e-88 327.8 205 75.6
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 6.7e-88 327.8 227 70.0
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 2.0e-87 326.2 204 75.0
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 2.0e-87 326.2 202 75.7
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 2.6e-87 325.9 222 69.4
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 5.7e-87 324.7 216 73.1
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 5.7e-87 324.7 202 77.7
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 7.4e-87 324.3 217 73.7
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 2.8e-86 322.4 253 67.6
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 3.7e-86 322.0 208 73.1
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 3.7e-86 322.0 208 73.1
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 8.2e-86 320.9 206 73.3
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 9.1e-85 317.4 201 74.6
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 1.2e-84 317.0 221 73.3
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.6e-84 316.6 227 70.5
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 2.2e-83 312.8 200 74.0
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 5.0e-83 311.6 226 69.9
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 5.0e-83 311.6 203 74.4
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 1.9e-82 309.7 210 73.3
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 4.7e-81 305.1 211 70.1
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 8.0e-81 304.3 213 70.0
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 9.7e-79 297.4 198 74.2
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 4.8e-78 295.0 186 77.4
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 3.5e-76 288.9 198 69.2
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 1.0e-75 287.3 202 67.8
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 5.0e-75 285.0 214 68.2
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 6.5e-75 284.6 214 65.4
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.1e-74 283.9 228 68.0
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 3.2e-74 282.3 212 65.1
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 9.4e-74 280.8 216 64.4
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 6.1e-73 278.1 230 64.8
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 1.2e-71 273.9 230 63.5
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 1.5e-71 273.5 215 64.2
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 2.2e-70 269.6 221 64.7
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 6.3e-70 268.1 173 75.1
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.0e-67 260.8 231 60.2
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 1.3e-67 260.4 227 58.6
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 1.9e-66 256.5 214 63.1
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 9.5e-66 254.2 210 61.4
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 9.5e-66 254.2 159 78.0
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 4.4e-63 245.4 157 73.9
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 2.2e-62 243.0 196 62.2
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 8.3e-62 241.1 214 60.3
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 2.4e-61 239.6 152 77.6
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 4.5e-60 235.3 214 57.5
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 1.3e-59 233.8 211 56.4
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 5.6e-58 228.4 152 75.0
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.4e-56 223.8 222 53.2
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.1e-56 222.6 186 63.4
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 2.0e-55 219.9 214 55.6
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 2.6e-55 219.5 222 51.8
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 5.6e-50 201.8 211 49.3
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 1.0e-43 181.0 235 45.1
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 1.5e-42 177.2 181 55.2
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 5.6e-42 175.3 119 77.3
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.1e-41 171.4 123 73.2
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 2.0e-39 166.8 240 44.2
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.1e-36 156.8 221 43.0
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 6.0e-36 155.2 102 68.6
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 6.0e-36 155.2 94 79.8
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 6.0e-36 155.2 217 42.9
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.1e-34 151.0 109 66.1
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 4.0e-32 142.5 121 66.9
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 1.9e-29 133.7 78 84.6
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 4.6e-28 129.0 79 77.2
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 8.7e-27 124.8 157 42.0
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 1.3e-25 120.9 83 73.5
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 2.6e-15 86.7 202 30.2
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 4.9e-14 82.4 73 54.8
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 7.4e-10 68.6 110 39.1
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 1.2e-07 61.2 74 51.4
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 1.5e-07 60.8 78 43.6
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 1.5e-07 60.8 40 60.0


User provided reference genes

Program Settings