Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 3.1e-99 365.2 190 100.0
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.3e-57 226.9 218 63.3
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 8.1e-55 217.6 219 61.2
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.1e-48 197.2 215 58.1
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 1.5e-48 196.8 221 56.1
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 6.4e-44 181.4 218 53.2
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 5.3e-38 161.8 199 53.3
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.5e-32 143.7 136 64.7
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 6.5e-28 128.3 143 55.9
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 3.9e-25 119.0 241 41.9
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 8.7e-25 117.9 211 41.7
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 1.9e-24 116.7 202 43.1
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 1.9e-24 116.7 221 42.1
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 2.5e-24 116.3 203 42.4
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 3.3e-24 115.9 243 39.5
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 1.3e-23 114.0 243 39.9
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 4.8e-23 112.1 220 44.1
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 1.1e-22 110.9 210 41.4
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 1.8e-22 110.2 211 40.3
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 1.8e-22 110.2 215 40.5
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 3.1e-22 109.4 234 38.0
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 3.1e-22 109.4 226 38.5
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 5.3e-22 108.6 226 38.5
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 6.9e-22 108.2 236 40.7
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 9.0e-22 107.8 212 41.0
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 9.0e-22 107.8 225 38.2
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 1.5e-21 107.1 220 40.0
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 2.0e-21 106.7 198 40.9
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 5.9e-21 105.1 222 40.1
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 7.7e-21 104.8 211 41.7
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 1.0e-20 104.4 214 39.7
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 1.3e-20 104.0 212 40.6
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 1.7e-20 103.6 202 40.6
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 2.2e-20 103.2 215 37.7
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 2.2e-20 103.2 234 37.6
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 2.9e-20 102.8 205 39.5
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 2.9e-20 102.8 234 37.6
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 3.8e-20 102.4 226 36.7
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 6.5e-20 101.7 209 41.1
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 6.5e-20 101.7 202 40.1
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 8.5e-20 101.3 208 40.4
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 8.5e-20 101.3 238 38.7
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 8.5e-20 101.3 223 39.5
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 1.1e-19 100.9 197 41.6
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 1.4e-19 100.5 241 36.1
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 1.4e-19 100.5 202 40.6
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 1.9e-19 100.1 228 38.2
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 1.9e-19 100.1 220 39.1
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 2.5e-19 99.8 244 36.5
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 2.5e-19 99.8 225 37.3
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.2e-19 99.0 91 64.8
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 4.2e-19 99.0 204 40.2
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 4.2e-19 99.0 221 37.1
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 7.2e-19 98.2 210 39.0
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 7.2e-19 98.2 207 37.7
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 9.4e-19 97.8 206 39.8
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 1.2e-18 97.4 229 37.1
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.6e-18 97.1 209 40.2
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 2.7e-18 96.3 227 35.7
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 2.7e-18 96.3 203 39.4
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 2.7e-18 96.3 226 39.4
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 3.6e-18 95.9 191 40.3
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 3.6e-18 95.9 213 40.4
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 4.6e-18 95.5 190 40.5
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 6.1e-18 95.1 248 35.1
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 6.1e-18 95.1 213 39.9
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 7.9e-18 94.7 261 34.1
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 1.0e-17 94.4 195 39.5
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 1.0e-17 94.4 189 40.7
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 1.0e-17 94.4 225 38.2
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 1.4e-17 94.0 209 36.4
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 2.3e-17 93.2 204 36.3
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 3.9e-17 92.4 231 34.6
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 3.9e-17 92.4 245 34.7
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 5.1e-17 92.0 245 34.7
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 5.1e-17 92.0 235 34.5
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 6.7e-17 91.7 239 34.3
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 8.8e-17 91.3 229 35.8
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 8.8e-17 91.3 202 39.6
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 8.8e-17 91.3 213 33.3
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 8.8e-17 91.3 189 39.7
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 1.1e-16 90.9 239 35.6
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.0e-16 90.1 212 34.9
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 7.4e-16 88.2 206 37.9
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 9.7e-16 87.8 134 45.5
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 1.3e-15 87.4 210 37.1
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 1.3e-15 87.4 234 34.2
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 1.7e-15 87.0 227 34.4
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 2.2e-15 86.7 177 39.5
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 2.2e-15 86.7 142 41.5
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 2.2e-15 86.7 121 41.3
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 6.3e-15 85.1 216 33.8
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 6.3e-15 85.1 205 35.6
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 1.4e-14 84.0 210 34.8
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 1.4e-14 84.0 132 44.7
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 1.8e-14 83.6 210 34.8
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 1.8e-14 83.6 210 35.2
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 2.4e-14 83.2 210 34.8
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 2.4e-14 83.2 210 35.2
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 2.4e-14 83.2 242 32.6
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 3.1e-14 82.8 201 33.8
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 3.1e-14 82.8 213 33.3
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 3.1e-14 82.8 263 35.0
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 3.1e-14 82.8 206 34.5
FAN07G1886 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.5e-13 80.5 74 67.6
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 5.9e-13 78.6 189 34.9
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 1.1e-11 74.3 136 41.9
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 1.1e-11 74.3 135 40.0
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 5.5e-11 72.0 186 36.6
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 5.5e-11 72.0 192 35.9
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 2.3e-09 66.6 113 43.4
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 3.9e-09 65.9 113 43.4
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 6.7e-09 65.1 113 42.5
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 6.7e-09 65.1 113 41.6
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 6.7e-09 65.1 217 32.3
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 1.1e-08 64.3 186 36.6
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 2.0e-08 63.5 113 41.6
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 3.3e-08 62.8 98 44.9
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 5.7e-08 62.0 114 40.4
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 7.4e-08 61.6 133 36.8
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.2e-07 60.1 50 66.0
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 6.3e-07 58.5 115 37.4
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 1.4e-06 57.4 112 36.6


User provided reference genes

Program Settings