Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0223761 Rosa chinensis HOM05D002759 ORTHO05D003290 4.6e-120 434.5 207 100.0
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 1.8e-68 263.1 198 68.2
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 1.0e-63 247.3 198 65.2
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.0e-63 247.3 198 65.2
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.0e-63 247.3 198 65.2
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 5.2e-63 245.0 198 64.6
FvH4_5g29930 Fragaria vesca HOM05D002759 ORTHO05D003290 2.8e-61 239.2 199 64.3
FAN04G1156 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.5e-57 226.9 199 62.3
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 1.4e-55 220.3 198 57.1
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 2.8e-53 212.6 198 57.1
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 5.4e-52 208.4 198 55.6
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 5.4e-52 208.4 183 61.7
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 4.5e-51 205.3 198 55.6
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 5.9e-51 204.9 198 55.1
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 2.8e-48 196.1 198 51.5
MD15G1419000 Malus domestica HOM05D002759 ORTHO05D003290 2.8e-48 196.1 204 52.9
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 8.0e-48 194.5 198 52.5
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 1.4e-47 193.7 198 52.0
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 1.8e-47 193.4 199 53.3
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 1.8e-47 193.4 198 53.0
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 2.3e-47 193.0 198 52.5
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 3.0e-47 192.6 198 52.5
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 8.9e-47 191.0 198 53.5
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 8.9e-47 191.0 198 53.5
Cpa.g.sc148.32 Carica papaya HOM05D002759 ORTHO05D003290 8.9e-47 191.0 182 54.4
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 8.9e-47 191.0 198 53.0
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 1.2e-46 190.7 198 51.0
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 7.5e-46 188.0 198 52.5
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 9.8e-46 187.6 198 50.5
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 1.7e-45 186.8 198 51.5
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 4.9e-45 185.3 198 50.5
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 6.3e-45 184.9 198 52.0
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.3e-45 184.5 190 53.2
Lj9A311T56 Lonicera japonica HOM05D002759 ORTHO05D003290 1.4e-44 183.7 198 50.5
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 1.4e-44 183.7 198 50.5
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 1.4e-44 183.7 198 50.5
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 5.4e-44 181.8 198 51.0
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 1.6e-43 180.3 198 49.0
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 2.7e-43 179.5 198 51.0
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 3.5e-43 179.1 198 49.5
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 5.9e-43 178.3 198 51.5
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 7.8e-43 177.9 198 49.5
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 1.0e-42 177.6 198 51.5
MSTRG.16534 Avicennia marina HOM05D002759 ORTHO05D003290 1.0e-42 177.6 198 47.0
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 1.0e-42 177.6 198 48.5
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 1.3e-42 177.2 198 47.5
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 1.3e-42 177.2 198 47.5
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 1.7e-42 176.8 198 47.5
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 2.3e-42 176.4 198 49.0
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 2.3e-42 176.4 198 49.0
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 2.3e-42 176.4 198 49.0
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 2.9e-42 176.0 198 50.5
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 3.8e-42 175.6 198 49.0
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 3.8e-42 175.6 198 49.0
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 5.0e-42 175.3 198 47.5
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 5.0e-42 175.3 198 47.5
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 5.0e-42 175.3 200 49.5
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 8.6e-42 174.5 198 46.5
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 8.6e-42 174.5 198 47.5
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 8.6e-42 174.5 198 46.5
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 1.1e-41 174.1 198 47.5
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 1.1e-41 174.1 198 45.5
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 1.1e-41 174.1 199 49.7
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 1.1e-41 174.1 198 48.0
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 1.5e-41 173.7 198 47.0
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 1.9e-41 173.3 198 47.5
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 1.9e-41 173.3 198 47.0
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 1.9e-41 173.3 198 49.0
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 1.9e-41 173.3 198 47.0
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 2.5e-41 172.9 192 49.0
CARHR230000 Cardamine hirsuta HOM05D002759 ORTHO05D003290 4.3e-41 172.2 198 47.5
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 4.3e-41 172.2 198 48.0
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 7.3e-41 171.4 198 49.0
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 7.3e-41 171.4 198 49.0
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 1.6e-40 170.2 192 49.5
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 1.6e-40 170.2 211 46.0
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 2.1e-40 169.9 198 49.0
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 2.1e-40 169.9 192 49.5
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 2.8e-40 169.5 199 45.7
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 2.8e-40 169.5 208 45.7
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 2.8e-40 169.5 208 45.7
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 4.7e-40 168.7 207 46.4
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 8.0e-40 167.9 203 46.8
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 1.0e-39 167.5 198 45.5
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 1.4e-39 167.2 198 46.0
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 1.4e-39 167.2 198 46.0
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 1.8e-39 166.8 192 47.4
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 3.0e-39 166.0 211 45.0
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 4.0e-39 165.6 203 46.3
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 4.0e-39 165.6 198 45.5
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 2.0e-38 163.3 198 44.9
vmacro01786 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 3.4e-38 162.5 201 46.8
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 7.5e-38 161.4 198 46.0
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 9.8e-38 161.0 198 46.0
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 9.8e-38 161.0 198 44.9
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 1.7e-37 160.2 198 46.5
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.7e-37 160.2 211 44.1
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 4.9e-37 158.7 203 45.8
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 2.4e-36 156.4 198 45.5
Ah.07g205400 Amaranthus hybridus HOM05D002759 ORTHO05D003290 5.4e-36 155.2 203 44.3
Os02g0770700 Oryza sativa ssp. japonica HOM05D002759 ORTHO05D003290 2.7e-35 152.9 198 40.9
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 1.0e-34 151.0 192 42.2
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 1.7e-34 150.2 198 41.4
ATR0661G182 Amborella trichopoda HOM05D002759 ORTHO05D003290 6.6e-34 148.3 213 39.9
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 5.6e-33 145.2 198 44.9
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 9.5e-33 144.4 192 41.1
HPP92_009112 Vanilla planifolia HOM05D002759 ORTHO05D003290 1.8e-31 140.2 198 39.9
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 2.3e-31 139.8 198 40.9
Atru.chr6.1022 Acer truncatum HOM05D002759 ORTHO05D003290 1.2e-30 137.5 93 74.2
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 3.4e-30 136.0 198 39.4
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 5.8e-30 135.2 192 43.8
MD08G1226700 Malus domestica HOM05D002759 ORTHO05D003290 2.9e-29 132.9 103 65.0
arahy.Tifrunner.gnm1.ann1.JK8JKR Arachis hypogaea HOM05D002759 ORTHO05D003290 1.6e-24 117.1 192 35.9
SEGI_09006 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 2.8e-24 116.3 171 39.2
AagrBONN_evm.TU.Sc2ySwM_117.1581 Anthoceros agrestis HOM05D002759 ORTHO05D003290 6.8e-23 111.7 201 36.3
vmacro01782 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 7.5e-22 108.2 197 36.0
Pp3c8_2900 Physcomitrium patens HOM05D002759 ORTHO05D003290 2.9e-21 106.3 173 34.1
Mapoly0118s0005 Marchantia polymorpha HOM05D002759 ORTHO05D003290 4.9e-21 105.5 183 35.0
SMO356G0583 Selaginella moellendorffii HOM05D002759 ORTHO05D003290 4.9e-21 105.5 220 31.4
Oeu037466.1 Olea europaea HOM05D002759 ORTHO05D003290 2.4e-20 103.2 137 40.9
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 2.7e-19 99.8 195 32.3
unitig_26.g9017 Utricularia gibba HOM05D002759 ORTHO05D003290 3.5e-19 99.4 137 40.9
CBR_g18638 Chara braunii HOM05D002759 ORTHO05D003290 3.0e-18 96.3 183 33.9
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 1.9e-17 93.6 198 30.8
Cre01.g029200 Chlamydomonas reinhardtii HOM05D002759 ORTHO05D003290 3.3e-17 92.8 173 32.4
Aqoxy3G00697 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 5.6e-17 92.0 136 39.0
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 2.8e-16 89.7 201 31.3
C04p12980 Brassica napus HOM05D002759 ORTHO05D003290 2.8e-16 89.7 201 31.3
C04p13080 Brassica napus HOM05D002759 ORTHO05D003290 2.8e-16 89.7 201 31.3
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 2.8e-16 89.7 201 31.3
BolC4t22359H Brassica oleracea HOM05D002759 ORTHO05D003290 8.9e-15 84.7 203 32.0
SEGI_00066 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 4.4e-14 82.4 66 57.6
SEGI_24894 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 2.2e-13 80.1 64 57.8
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 2.9e-13 79.7 63 61.9
vmacro01780 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 3.2e-12 76.3 63 60.3
Actinidia00221 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.2e-11 74.3 49 69.4
CARHR073260 Cardamine hirsuta HOM05D002759 ORTHO05D003290 1.6e-11 73.9 53 64.2
SEGI_36881 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 2.5e-09 66.6 57 54.4
Atru.chr12.1442 Acer truncatum HOM05D002759 ORTHO05D003290 4.3e-09 65.9 134 32.1
Oeu043988.1 Olea europaea HOM05D002759 ORTHO05D003290 1.2e-06 57.8 119 31.9
Ca_21888_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 2.6e-06 56.6 125 28.8
vmacro01784 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 2.6e-06 56.6 92 42.4
CARHR254490 Cardamine hirsuta HOM05D002759 ORTHO05D003290 4.4e-06 55.8 41 58.5


User provided reference genes

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