Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 8.0e-220 766.9 424 100.0
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.3e-203 712.2 424 92.7
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 6.8e-203 710.7 424 92.7
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 1.3e-201 706.4 424 92.7
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.7e-201 704.9 424 92.5
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.1e-187 660.2 424 87.7
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 1.3e-177 626.7 424 82.3
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 6.2e-172 607.8 450 75.3
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 1.1e-171 607.1 473 73.2
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 4.8e-164 581.6 422 76.8
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 1.1e-157 560.5 421 74.8
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.1e-157 560.5 424 74.8
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 4.3e-157 558.5 428 73.6
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 1.3e-156 557.0 421 74.6
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 6.2e-156 554.7 424 73.3
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 8.2e-156 554.3 419 74.5
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 8.2e-156 554.3 411 75.4
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 1.4e-155 553.5 424 73.1
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.4e-155 553.5 421 73.9
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 2.0e-154 549.7 426 72.8
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 4.9e-153 545.0 422 73.0
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 1.1e-152 543.9 437 70.5
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 6.0e-151 538.1 422 73.0
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 1.0e-150 537.3 422 72.7
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 1.3e-150 537.0 422 72.7
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 2.3e-150 536.2 426 72.1
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 3.0e-150 535.8 429 70.9
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 3.0e-150 535.8 424 71.2
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 3.9e-150 535.4 422 72.5
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 8.7e-150 534.3 424 71.9
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 8.7e-150 534.3 430 71.2
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 5.3e-147 525.0 432 70.6
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 9.0e-147 524.2 408 73.0
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.6e-146 522.7 428 70.3
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 3.8e-145 518.8 433 70.0
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 3.8e-145 518.8 419 71.1
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 1.1e-144 517.3 425 67.8
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 1.1e-144 517.3 419 72.6
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 2.1e-143 513.1 419 71.4
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 6.1e-143 511.5 368 76.4
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.0e-142 510.8 430 69.1
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 5.1e-142 508.4 426 70.0
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 1.9e-141 506.5 422 71.3
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.5e-141 506.1 427 69.1
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 5.7e-141 505.0 431 68.9
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 6.3e-140 501.5 426 68.8
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 2.4e-139 499.6 423 67.6
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 3.1e-139 499.2 413 68.8
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 1.2e-138 497.3 417 70.0
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 1.2e-138 497.3 446 67.5
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.9e-137 492.7 425 67.8
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 9.4e-136 487.6 419 67.5
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 2.7e-135 486.1 420 70.2
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 3.6e-135 485.7 429 68.8
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 3.9e-134 482.3 459 61.9
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 5.1e-134 481.9 374 73.0
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 3.7e-132 475.7 443 65.9
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.8e-131 473.4 502 58.8
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 2.4e-131 473.0 424 67.0
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.2e-130 470.7 433 66.3
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 1.4e-128 463.8 434 64.7
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.4e-128 463.8 410 68.0
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 4.2e-128 462.2 422 66.8
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 7.2e-128 461.5 426 65.3
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 2.1e-127 459.9 428 64.5
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 6.7e-126 454.9 423 63.4
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 4.4e-125 452.2 424 64.6
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 5.7e-125 451.8 422 65.2
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 1.3e-124 450.7 413 64.6
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 3.7e-124 449.1 430 61.9
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 6.3e-124 448.4 413 66.1
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.0e-122 443.4 423 61.7
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.6e-122 443.0 434 61.3
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 4.5e-122 442.2 413 63.4
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 4.5e-122 442.2 423 61.5
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 5.9e-122 441.8 413 64.4
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 1.1e-120 437.6 409 64.3
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 1.4e-118 430.6 420 61.4
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 3.0e-118 429.5 426 60.6
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 2.6e-117 426.4 281 80.8
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 3.3e-117 426.0 401 63.6
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 1.3e-116 424.1 443 59.1
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 1.7e-116 423.7 428 61.4
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 2.2e-116 423.3 425 61.9
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 6.3e-116 421.8 373 64.6
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 8.2e-116 421.4 422 61.4
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 1.1e-115 421.0 426 59.9
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 1.1e-115 421.0 412 61.7
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 1.2e-114 417.5 425 60.0
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 2.7e-114 416.4 395 63.5
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.7e-114 416.4 422 61.1
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 1.7e-113 413.7 419 59.9
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 5.0e-113 412.1 388 62.6
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 5.0e-113 412.1 388 62.6
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.5e-112 410.6 420 61.0
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 4.2e-112 409.1 431 57.8
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 6.1e-111 405.2 419 61.8
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.6e-106 390.6 427 59.0
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 2.9e-105 386.3 398 58.3
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.9e-105 386.3 362 63.8
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 3.6e-103 379.4 429 56.4
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 4.4e-101 372.5 416 56.2
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 7.5e-101 371.7 295 71.9
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 8.3e-100 368.2 312 67.6
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 3.1e-99 366.3 404 55.4
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 8.6e-97 358.2 400 56.8
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 3.3e-96 356.3 399 59.4
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 1.0e-94 351.3 460 51.1
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 5.2e-94 349.0 390 57.2
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 8.3e-92 341.7 424 55.0
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 6.0e-90 335.5 304 67.1
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 3.9e-89 332.8 324 61.4
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.6e-87 327.4 257 71.2
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 1.1e-80 304.7 332 56.0
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.1e-78 298.1 273 63.0
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 2.3e-78 297.0 264 65.5
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 3.1e-78 296.6 270 67.0
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 6.4e-76 288.9 314 58.0
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 6.0e-74 282.3 195 79.0
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 9.5e-72 275.0 270 62.6
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 1.3e-68 264.6 420 45.2
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 1.9e-67 260.8 274 58.8
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 7.1e-67 258.8 275 58.2
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 1.0e-65 255.0 393 44.8
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 6.6e-65 252.3 267 62.2
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 4.3e-64 249.6 276 58.0
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 4.4e-61 239.6 345 49.3
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 5.4e-59 232.6 273 53.1
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 4.3e-56 223.0 136 84.6
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 1.3e-55 221.5 266 54.5
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 3.6e-55 219.9 135 84.4
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 6.9e-54 215.7 476 38.9
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 4.9e-52 209.5 388 41.0
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 9.3e-51 205.3 268 51.5
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 4.6e-50 203.0 180 65.0
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 1.8e-46 191.0 186 59.1
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 4.0e-46 189.9 195 58.5
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 7.6e-45 185.7 128 77.3
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 1.1e-43 181.8 397 41.1
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 1.3e-41 174.9 156 62.2
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 2.6e-37 160.6 142 65.5
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 9.7e-32 142.1 113 68.1
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 1.6e-31 141.4 562 31.1
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 3.1e-22 110.5 130 53.1
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 1.5e-16 91.7 239 36.8
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 5.3e-14 83.2 183 38.8
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 4.4e-08 63.5 108 40.7
SEGI_11287 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 2.2e-07 61.2 68 48.5
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 2.8e-07 60.8 37 73.0
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 9.1e-06 55.8 33 72.7


User provided reference genes

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