Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 8.3e-111 403.7 198 100.0
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 2.7e-101 372.1 198 90.4
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.1e-98 362.5 206 86.9
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.8e-98 362.1 206 86.9
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.8e-97 359.4 198 89.4
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.4e-94 349.7 198 86.9
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 1.4e-94 349.7 198 84.8
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 4.1e-94 348.2 198 84.3
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 7.8e-93 344.0 198 83.8
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 2.1e-90 335.9 198 77.3
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 2.8e-90 335.5 198 80.3
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 2.6e-88 328.9 198 78.3
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 1.4e-86 323.2 198 76.3
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 5.4e-86 321.2 198 76.8
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 7.1e-86 320.9 198 77.3
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 2.1e-85 319.3 198 75.3
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 2.7e-85 318.9 199 75.4
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 2.7e-85 318.9 198 75.3
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 6.0e-85 317.8 198 72.7
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.0e-84 317.0 198 77.3
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.0e-84 317.0 198 77.3
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.3e-84 316.6 198 74.7
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.7e-84 316.2 198 73.7
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 1.7e-84 316.2 198 73.7
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 3.9e-84 315.1 198 73.2
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 5.1e-84 314.7 198 73.7
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 6.6e-84 314.3 198 73.7
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 8.7e-84 313.9 198 72.7
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 1.9e-83 312.8 198 74.7
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.3e-83 312.0 198 74.7
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 3.3e-83 312.0 198 74.7
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 4.3e-83 311.6 198 72.7
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 4.3e-83 311.6 198 72.7
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 7.3e-83 310.8 198 74.2
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 9.6e-83 310.5 198 73.7
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 2.1e-82 309.3 198 71.7
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.8e-82 308.9 198 74.7
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 3.6e-82 308.5 198 72.2
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 1.8e-81 306.2 198 73.2
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 1.8e-81 306.2 198 72.2
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 2.4e-81 305.8 198 71.7
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 3.1e-81 305.4 198 71.7
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 9.0e-81 303.9 198 72.2
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 4.4e-80 301.6 198 71.7
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 7.6e-80 300.8 198 68.7
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 7.6e-80 300.8 200 73.5
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 71.7
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.7e-79 299.7 198 72.2
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 2.2e-79 299.3 200 71.5
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 2.2e-79 299.3 198 71.2
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 2.9e-79 298.9 198 70.7
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 2.9e-79 298.9 198 70.7
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 3.8e-79 298.5 198 70.2
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 6.4e-79 297.7 198 70.2
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 6.4e-79 297.7 198 69.7
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 6.4e-79 297.7 198 71.2
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 6.4e-79 297.7 199 70.4
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 8.4e-79 297.4 198 70.2
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 1.1e-78 297.0 198 71.2
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.1e-78 297.0 198 69.2
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 1.1e-78 297.0 198 67.7
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 1.9e-78 296.2 198 69.7
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.9e-78 296.2 198 68.7
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 1.9e-78 296.2 198 71.2
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 3.2e-78 295.4 198 69.2
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 4.2e-78 295.0 198 69.7
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 4.2e-78 295.0 198 69.7
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 5.4e-78 294.7 198 69.7
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 5.4e-78 294.7 198 69.7
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 7.1e-78 294.3 198 69.7
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 9.3e-78 293.9 234 62.8
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 1.2e-77 293.5 198 69.2
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.2e-77 293.5 234 62.4
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 68.2
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 2.7e-77 292.4 198 69.2
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 2.7e-77 292.4 198 68.7
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 3.5e-77 292.0 198 69.2
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 68.7
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 69.2
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 3.9e-76 288.5 198 68.2
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 3.9e-76 288.5 217 65.0
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 5.1e-76 288.1 198 69.2
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 6.6e-76 287.7 198 65.7
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 1.3e-74 283.5 216 63.9
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 2.1e-74 282.7 198 67.2
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 2.8e-74 282.3 173 76.3
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 2.4e-73 279.3 219 62.6
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 6.9e-73 277.7 253 56.5
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 1.2e-72 276.9 198 63.6
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 1.2e-72 276.9 236 58.9
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.5e-72 276.6 170 75.9
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 4.5e-72 275.0 241 58.1
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 1.3e-71 273.5 233 57.9
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.7e-71 273.1 198 63.1
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 3.8e-71 271.9 198 65.2
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 1.4e-70 270.0 149 86.6
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 3.5e-69 265.4 182 67.6
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 1.8e-68 263.1 173 69.4
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 3.9e-68 261.9 198 64.1
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 7.4e-67 257.7 180 67.8
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 2.8e-66 255.8 188 65.4
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 6.9e-65 251.1 170 66.5
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.7e-63 246.5 198 61.1
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 1.4e-62 243.4 155 72.3
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 1.9e-62 243.0 191 59.2
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 1.6e-58 229.9 198 55.1
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 2.8e-58 229.2 198 57.6
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 3.7e-58 228.8 167 67.1
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 2.9e-55 219.2 198 49.5
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 5.0e-55 218.4 145 69.0
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 6.5e-55 218.0 198 50.5
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 4.6e-53 211.8 135 74.1
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 1.0e-52 210.7 198 46.5
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 3.7e-50 202.2 191 46.6
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 5.3e-49 198.4 195 46.7
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 5.0e-47 191.8 134 63.4
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 6.1e-45 184.9 143 64.3
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 8.8e-44 181.0 115 73.9
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 2.5e-43 179.5 185 51.4
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 9.7e-43 177.6 160 50.0
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 1.3e-42 177.2 120 64.2
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 3.7e-42 175.6 130 65.4
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 1.4e-41 173.7 130 60.0
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 2.4e-41 172.9 115 66.1
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 3.1e-41 172.6 111 76.6
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 3.6e-37 159.1 142 53.5
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 1.3e-34 150.6 143 49.7
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 5.3e-33 145.2 115 53.9
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 7.0e-33 144.8 115 53.9
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 2.1e-29 133.3 87 62.1
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 1.0e-28 131.0 77 83.1
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 2.0e-27 126.7 82 76.8
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 9.7e-27 124.4 77 80.5
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 2.8e-26 122.9 77 80.5
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 3.7e-26 122.5 121 54.5
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 2.4e-25 119.8 77 76.6
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 9.1e-25 117.9 75 74.7
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 1.6e-24 117.1 145 37.2
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 4.5e-24 115.5 77 72.7
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 1.3e-23 114.0 77 72.7
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 1.3e-23 114.0 77 72.7
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.2e-22 109.4 77 67.5
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 9.4e-22 107.8 69 75.4
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 1.4e-20 104.0 96 56.2
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 2.0e-19 100.1 55 81.8
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.0e-19 100.1 83 57.8
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 1.3e-18 97.4 72 68.1
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 1.4e-17 94.0 67 61.2
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.4e-17 93.2 75 60.0
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 3.1e-17 92.8 145 40.7
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 3.5e-16 89.4 99 41.4
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 3.5e-16 89.4 65 63.1
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 6.5e-15 85.1 64 62.5
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 1.6e-13 80.5 58 51.7
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 2.7e-13 79.7 119 37.0
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 2.3e-12 76.6 57 59.6
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 4.0e-12 75.9 46 78.3
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 5.2e-12 75.5 63 44.4
MCO15G520 Micromonas commoda HOM05D004322 ORTHO05D005033 1.2e-11 74.3 186 23.1
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 2.0e-11 73.6 61 54.1
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 9.8e-11 71.2 57 56.1
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 2.7e-08 63.2 55 56.4
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 5.9e-08 62.0 63 46.0
VMungo0540G1689 Vigna mungo HOM05D004322 ORTHO05D005033 3.8e-07 59.3 40 75.0
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 3.3e-06 56.2 45 62.2
Lsat_1_v5_gn_4_104380 Lactuca sativa HOM05D001722 ORTHO05D048310 5.6e-06 55.5 36 50.0


User provided reference genes

Program Settings