Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 8.6e-180 633.6 343 100.0
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 7.6e-128 461.1 352 76.4
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.6e-125 451.8 352 75.0
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.2e-122 441.4 352 73.3
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 9.6e-115 417.5 335 72.2
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 1.0e-79 301.2 345 55.4
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 4.7e-77 292.4 366 55.2
FAN22G2313 Fragaria x ananassa HOM05D005305 ORTHO05D006394 7.0e-57 225.3 173 71.7
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 3.1e-52 209.9 177 63.3
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.6e-51 206.8 177 62.1
FvH4_2g02380 Fragaria vesca HOM05D005305 ORTHO05D006394 1.6e-48 197.6 177 61.6
FvH4_4g13350 Fragaria vesca HOM05D005305 ORTHO05D006394 2.8e-45 186.8 138 74.6
FAN02G3216 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.7e-45 186.0 174 64.9
FAN20G0407 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.0e-39 166.8 226 52.7
FAN20G1442 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.0e-39 166.8 226 52.7
FAN20G2254 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.0e-39 166.8 226 52.7
FAN20G2361 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.0e-39 166.8 226 52.7
FvH4_4g36540 Fragaria vesca HOM05D005305 ORTHO05D006394 2.8e-37 160.2 116 73.3
FAN12G2268 Fragaria x ananassa HOM05D005305 ORTHO05D006394 8.1e-37 158.7 116 72.4
FAN24G2323 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.6e-35 153.7 226 50.9
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 2.2e-34 150.6 277 41.9
FvH4_2g04910 Fragaria vesca HOM05D005305 ORTHO05D006394 6.4e-34 149.1 225 50.2
FAN02G0608 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.9e-33 147.5 109 72.5
FAN02G4273 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.4e-33 147.1 102 72.5
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 3.2e-33 146.7 276 43.8
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 5.4e-33 146.0 276 40.9
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 3.5e-32 143.3 319 38.2
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 6.6e-31 139.0 199 44.7
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 1.1e-30 138.3 313 38.7
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 1.9e-30 137.5 281 39.1
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 4.3e-30 136.3 175 47.4
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 5.6e-30 136.0 317 36.6
FAN05G3957 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.2e-29 134.8 109 67.9
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 2.1e-29 134.0 226 40.3
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 2.1e-29 134.0 252 40.5
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 2.1e-29 134.0 328 36.0
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 2.8e-29 133.7 183 43.2
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 2.8e-29 133.7 183 43.2
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 2.8e-29 133.7 183 43.2
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 2.8e-29 133.7 189 41.3
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 4.7e-29 132.9 173 47.4
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 4.7e-29 132.9 220 39.5
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 8.1e-29 132.1 241 40.7
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 1.4e-28 131.3 319 37.0
Atru.chr6.974 Acer truncatum HOM05D005305 ORTHO05D006394 1.8e-28 131.0 163 46.6
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 2.4e-28 130.6 324 32.7
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 3.1e-28 130.2 335 36.7
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 1.5e-27 127.9 327 33.6
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 1.5e-27 127.9 327 33.6
RcHm_v2.0_Chr7g0223241 Rosa chinensis HOM05D005305 ORTHO05D006394 2.6e-27 127.1 67 95.5
QL11p019060 Quercus lobata HOM05D005305 ORTHO05D006394 4.4e-27 126.3 290 39.7
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 7.6e-27 125.6 214 40.2
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 9.9e-27 125.2 292 35.6
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 9.9e-27 125.2 365 34.5
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 9.9e-27 125.2 253 39.5
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 1.3e-26 124.8 217 39.6
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 1.3e-26 124.8 225 38.7
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 1.3e-26 124.8 217 39.6
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 1.7e-26 124.4 216 39.4
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 2.2e-26 124.0 225 38.7
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 3.8e-26 123.2 366 33.9
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 3.8e-26 123.2 208 40.4
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 4.9e-26 122.9 223 38.1
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 1.4e-25 121.3 212 39.2
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 1.9e-25 120.9 161 41.6
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 1.9e-25 120.9 180 41.7
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 4.2e-25 119.8 262 37.8
FvH4_4g36551 Fragaria vesca HOM05D005305 ORTHO05D006394 9.3e-25 118.6 174 47.1
FAN22G1821 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.6e-24 117.9 75 77.3
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 2.1e-24 117.5 188 44.1
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 7.8e-24 115.5 156 42.3
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 1.3e-23 114.8 212 37.7
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 1.3e-23 114.8 161 41.0
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 1.3e-23 114.8 197 40.6
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 1.7e-23 114.4 157 42.0
CiPaw.05G041500 Carya illinoinensis HOM05D005305 ORTHO05D006394 1.7e-23 114.4 351 32.8
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 3.0e-23 113.6 167 42.5
Lsat_1_v5_gn_5_107520 Lactuca sativa HOM05D005305 ORTHO05D006394 1.1e-22 111.7 309 32.0
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 1.5e-22 111.3 158 41.1
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 1.9e-22 110.9 294 32.0
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.9e-22 110.9 234 33.8
FAN11G0652 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.3e-22 110.2 114 59.6
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 3.3e-22 110.2 220 38.2
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 5.6e-22 109.4 168 39.3
FvH4_3g08610 Fragaria vesca HOM05D005305 ORTHO05D006394 7.3e-22 109.0 116 58.6
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 1.3e-21 108.2 176 37.5
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 1.6e-21 107.8 171 40.9
FAN12G4281 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.8e-21 107.1 173 43.9
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 3.6e-21 106.7 204 36.8
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 4.0e-20 103.2 197 36.5
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 4.0e-20 103.2 152 41.4
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 5.3e-20 102.8 206 35.9
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 6.9e-20 102.4 206 37.4
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 4.4e-19 99.8 172 39.5
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 7.6e-19 99.0 211 35.5
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 9.9e-19 98.6 208 37.0
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 9.9e-19 98.6 208 37.0
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 1.3e-18 98.2 242 33.1
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 1.7e-18 97.8 153 40.5
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.7e-18 97.8 213 32.9
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 1.7e-18 97.8 185 34.1
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 2.2e-18 97.4 208 36.1
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 2.2e-18 97.4 217 34.1
ECA234G0387 Erigeron canadensis HOM05D005305 ORTHO05D006394 2.9e-18 97.1 161 36.6
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 6.4e-18 95.9 167 36.5
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 6.4e-18 95.9 158 40.5
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 1.1e-17 95.1 151 41.1
BraA02t08169Z Brassica rapa HOM05D005305 ORTHO05D006394 1.4e-17 94.7 158 37.3
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 2.4e-17 94.0 220 36.8
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 2.4e-17 94.0 151 39.7
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 3.2e-17 93.6 179 31.8
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 3.2e-17 93.6 176 36.4
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 7.1e-17 92.4 194 35.1
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 9.3e-17 92.0 289 35.3
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 7.9e-16 89.0 176 36.9
PGR042G0513 Punica granatum HOM05D005305 ORTHO05D006394 1.0e-15 88.6 265 32.1
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 2.3e-15 87.4 152 37.5
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 2.3e-15 87.4 222 31.1
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 3.0e-15 87.0 217 32.3
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 5.1e-15 86.3 158 38.0
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 8.7e-15 85.5 220 32.7
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 1.9e-14 84.3 144 36.1
C02p49000 Brassica napus HOM05D005305 ORTHO05D006394 5.6e-14 82.8 90 47.8
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 7.3e-14 82.4 143 37.1
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 2.8e-13 80.5 263 32.3
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 3.1e-12 77.0 166 32.5
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 9.9e-11 72.0 164 28.7
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 1.7e-10 71.2 295 28.8
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 2.2e-10 70.9 143 30.1
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 2.2e-10 70.9 146 34.9
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.2e-10 70.9 146 34.9
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.4e-10 69.3 146 34.2
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.4e-09 67.4 146 33.6
MELO3C005314.2 Cucumis melo HOM05D002727 ORTHO05D002856 3.2e-09 67.0 160 27.5
Sed0024961 Sechium edule HOM05D002727 ORTHO05D002856 5.4e-09 66.2 141 30.5
PGR119G0434 Punica granatum HOM05D002727 ORTHO05D002856 2.1e-08 64.3 144 31.2
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 1.0e-07 62.0 143 30.1
FAN03G1798 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.3e-07 61.6 144 31.9
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 1.3e-07 61.6 141 34.8
Hma1.2p1_0712F.1_g207580 Hydrangea macrophylla HOM05D007205 ORTHO05D009175 1.3e-07 61.6 142 28.2
QL02p071341 Quercus lobata HOM05D002727 ORTHO05D002856 1.3e-07 61.6 150 30.7
FvH4_4g32150 Fragaria vesca HOM05D002727 ORTHO05D002856 2.3e-07 60.8 167 30.5
FAN12G1004 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.3e-07 60.8 167 30.5
FAN20G2269 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.3e-07 60.8 44 70.5
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 2.3e-07 60.8 89 40.4
Ciclev10017676m.g Citrus clementina HOM05D002727 ORTHO05D002856 3.0e-07 60.5 144 31.9
FAN22G0940 Fragaria x ananassa HOM05D002727 ORTHO05D002856 5.1e-07 59.7 167 29.9
ECA246G2885 Erigeron canadensis HOM05D006072 ORTHO05D007363 6.7e-07 59.3 126 32.5
Oeu044348.1 Olea europaea HOM05D002727 ORTHO05D002856 6.7e-07 59.3 139 28.1
Rhsim09G0100100 Rhododendron simsii HOM05D008460 ORTHO05D001602 6.7e-07 59.3 127 35.4
RcHm_v2.0_Chr4g0440841 Rosa chinensis HOM05D002727 ORTHO05D002856 6.7e-07 59.3 128 34.4
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 6.7e-07 59.3 162 26.5
Haze_24990 Corylus avellana HOM05D006072 ORTHO05D007363 8.7e-07 58.9 137 31.4
DCAR_023615 Daucus carota HOM05D002727 ORTHO05D002856 8.7e-07 58.9 128 36.7
Glyma.20G124900 Glycine max HOM05D002727 ORTHO05D002856 8.7e-07 58.9 143 32.2
Cfa002714 Carpinus fangiana HOM05D006072 ORTHO05D007363 1.1e-06 58.5 137 30.7
C03p48090 Brassica napus HOM05D000430 ORTHO05D000305 1.5e-06 58.2 60 48.3
Dinv18560 Davidia involucrata HOM05D007205 ORTHO05D009175 1.5e-06 58.2 148 27.0
FvH4_7g12190 Fragaria vesca HOM05D002727 ORTHO05D002856 1.5e-06 58.2 157 29.9
FAN06G2836 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.5e-06 58.2 157 30.6
Thecc.02G165600 Theobroma cacao HOM05D007205 ORTHO05D009175 1.9e-06 57.8 143 29.4
VMungo0720G2475 Vigna mungo HOM05D002727 ORTHO05D002856 1.9e-06 57.8 127 33.1
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 2.5e-06 57.4 152 29.6
MD13G1026900 Malus domestica HOM05D002727 ORTHO05D002856 2.5e-06 57.4 135 30.4
Manes.17G075200 Manihot esculenta HOM05D002727 ORTHO05D002856 2.5e-06 57.4 129 34.1
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 3.3e-06 57.0 147 27.2
FAN10G0099 Fragaria x ananassa HOM05D000147 ORTHO05D007841 3.3e-06 57.0 157 29.3
Phvul.007G037300 Phaseolus vulgaris HOM05D002727 ORTHO05D002856 3.3e-06 57.0 141 31.2
FAN07G1376 Fragaria x ananassa HOM05D002727 ORTHO05D002856 4.3e-06 56.6 153 30.1
Lj5g0017764 Lotus japonicus HOM05D002727 ORTHO05D002856 4.3e-06 56.6 137 31.4
Lalb_Chr24g0393611 Lupinus albus HOM05D007205 ORTHO05D009175 4.3e-06 56.6 94 34.0
TWI79G1492 Tripterygium wilfordii HOM05D002727 ORTHO05D002856 4.3e-06 56.6 135 31.1
C03p81290 Brassica napus HOM05D000250 ORTHO05D015314 5.6e-06 56.2 68 42.6
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 7.4e-06 55.8 137 29.9


User provided reference genes

Program Settings