Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0222761 Rosa chinensis HOM05D003215 ORTHO05D003735 4.1e-71 271.2 127 100.0
RcHm_v2.0_Chr5g0058161 Rosa chinensis HOM05D003215 ORTHO05D003735 9.2e-71 270.0 127 99.2
FAN16G3289 Fragaria x ananassa HOM05D003215 ORTHO05D003735 1.9e-68 262.3 127 96.1
FvH4_3g31460 Fragaria vesca HOM05D003215 ORTHO05D003735 9.5e-68 260.0 127 95.3
FAN11G0613 Fragaria x ananassa HOM05D003215 ORTHO05D003735 9.5e-68 260.0 127 95.3
FAN21G3495 Fragaria x ananassa HOM05D003215 ORTHO05D003735 9.5e-68 260.0 127 95.3
QL05p019413 Quercus lobata HOM05D003215 ORTHO05D003735 2.3e-53 212.2 125 78.4
QL09p047318 Quercus lobata HOM05D003215 ORTHO05D003735 3.9e-53 211.5 125 78.4
Prupe.6G210800 Prunus persica HOM05D003215 ORTHO05D003735 7.3e-52 207.2 124 75.8
CiPaw.11G100100 Carya illinoinensis HOM05D003215 ORTHO05D003735 2.4e-50 202.2 125 72.0
MD04G1037700 Malus domestica HOM05D003215 ORTHO05D003735 3.1e-50 201.8 127 72.4
DCAR_004337 Daucus carota HOM05D003215 ORTHO05D003735 4.0e-50 201.4 125 72.8
DCAR_024215 Daucus carota HOM05D003215 ORTHO05D003735 4.0e-50 201.4 125 72.8
DCAR_024216 Daucus carota HOM05D003215 ORTHO05D003735 4.0e-50 201.4 125 72.8
Prupe.6G106700 Prunus persica HOM05D003215 ORTHO05D003735 9.0e-50 200.3 126 72.2
DCAR_008318 Daucus carota HOM05D003215 ORTHO05D003735 1.2e-49 199.9 125 72.8
vmacro10400 Vaccinium macrocarpon HOM05D003215 ORTHO05D003735 1.2e-49 199.9 127 72.4
Ciclev10030284m.g Citrus clementina HOM05D003215 ORTHO05D003735 2.6e-49 198.7 127 70.1
Lj4C675G2 Lonicera japonica HOM05D003215 ORTHO05D003735 4.4e-49 198.0 127 70.1
Rhsim09G0130800 Rhododendron simsii HOM05D003215 ORTHO05D003735 5.8e-49 197.6 123 71.5
Manes.11G149200 Manihot esculenta HOM05D003215 ORTHO05D003735 9.9e-49 196.8 125 69.6
CiPaw.15G124500 Carya illinoinensis HOM05D003215 ORTHO05D003735 2.2e-48 195.7 127 68.5
Lj4C665T1 Lonicera japonica HOM05D003215 ORTHO05D003735 3.8e-48 194.9 127 69.3
CsaV3_3G009340 Cucumis sativus L. HOM05D003215 ORTHO05D003735 4.9e-48 194.5 127 68.5
ClCG05G001940 Citrullus lanatus HOM05D003215 ORTHO05D003735 6.4e-48 194.1 127 69.3
Sed0005911 Sechium edule HOM05D003215 ORTHO05D003735 6.4e-48 194.1 127 71.7
MELO3C006154.2 Cucumis melo HOM05D003215 ORTHO05D003735 1.1e-47 193.4 127 67.7
TWI31G0331 Tripterygium wilfordii HOM05D003215 ORTHO05D003735 1.4e-47 193.0 125 68.8
unitig_52.g17692 Utricularia gibba HOM05D003215 ORTHO05D003735 1.9e-47 192.6 125 68.0
Cpa.g.sc65.22 Carica papaya HOM05D003215 ORTHO05D003735 2.4e-47 192.2 125 68.0
Hund25131 Selenicereus undatus HOM05D003215 ORTHO05D003735 3.2e-47 191.8 127 68.5
Atru.chr3.3572 Acer truncatum HOM05D003215 ORTHO05D003735 4.2e-47 191.4 126 64.3
Actinidia34779 Actinidia chinensis HOM05D003215 ORTHO05D003735 4.2e-47 191.4 127 70.1
Dinv29349 Davidia involucrata HOM05D003215 ORTHO05D003735 5.4e-47 191.0 127 69.3
Thecc.09G346500 Theobroma cacao HOM05D003215 ORTHO05D003735 1.2e-46 189.9 126 65.9
TWI18G1003 Tripterygium wilfordii HOM05D003215 ORTHO05D003735 1.6e-46 189.5 125 68.0
EL10As2g23156 Beta vulgaris HOM05D003215 ORTHO05D003735 2.1e-46 189.1 126 68.3
Hma1.2p1_0892F.1_g233410 Hydrangea macrophylla HOM05D003215 ORTHO05D003735 2.7e-46 188.7 125 67.2
TWI31G0413 Tripterygium wilfordii HOM05D003215 ORTHO05D003735 4.6e-46 188.0 125 68.0
TAR626G0419 Trochodendron aralioides HOM05D003215 ORTHO05D003735 4.6e-46 188.0 123 68.3
Haze_21721 Corylus avellana HOM05D003215 ORTHO05D003735 6.0e-46 187.6 125 66.4
CANSAT54G0322 Cannabis sativa HOM05D003215 ORTHO05D003735 7.8e-46 187.2 126 68.3
Ciclev10014556m.g Citrus clementina HOM05D003215 ORTHO05D003735 1.0e-45 186.8 122 67.2
Potri.015G095000 Populus trichocarpa HOM05D003215 ORTHO05D003735 1.3e-45 186.4 125 68.0
Manes.04G016500 Manihot esculenta HOM05D003215 ORTHO05D003735 1.7e-45 186.0 125 66.4
SalBow6G4532 Salvia bowleyana HOM05D003215 ORTHO05D003735 2.3e-45 185.7 125 66.4
Sopen03g029820 Solanum pennellii HOM05D003215 ORTHO05D003735 2.3e-45 185.7 125 67.2
Solyc03g019800.4 Solanum lycopersicum HOM05D003215 ORTHO05D003735 3.0e-45 185.3 125 67.2
PGSC0003DMG400015274 Solanum tuberosum HOM05D003215 ORTHO05D003735 3.0e-45 185.3 125 67.2
PGR083G2356 Punica granatum HOM05D003215 ORTHO05D003735 3.9e-45 184.9 127 66.1
Cfa013261 Carpinus fangiana HOM05D003215 ORTHO05D003735 5.1e-45 184.5 123 65.0
LjContig00081g0004985 Lotus japonicus HOM05D003215 ORTHO05D003735 6.6e-45 184.1 125 64.8
Nitab4.5_0004170g0030 Nicotiana tabacum HOM05D003215 ORTHO05D003735 6.6e-45 184.1 125 65.6
Oeu046322.1 Olea europaea HOM05D003215 ORTHO05D003735 6.6e-45 184.1 125 66.4
Potri.003G168900 Populus trichocarpa HOM05D003215 ORTHO05D003735 6.6e-45 184.1 125 67.2
Sed0019703 Sechium edule HOM05D003215 ORTHO05D003735 8.7e-45 183.7 127 66.1
Duzib168G1098 Durio zibethinus HOM05D003215 ORTHO05D003735 1.1e-44 183.3 126 63.5
Oeu050248.1 Olea europaea HOM05D003215 ORTHO05D003735 1.5e-44 183.0 125 65.6
arahy.Tifrunner.gnm1.ann1.7W7N8S Arachis hypogaea HOM05D003215 ORTHO05D003735 1.9e-44 182.6 125 65.6
Glyma.13G128500 Glycine max HOM05D003215 ORTHO05D003735 1.9e-44 182.6 125 62.4
MSTRG.4371 Avicennia marina HOM05D003215 ORTHO05D003735 2.5e-44 182.2 125 65.6
COL.COLO4_18286 Corchorus olitorius HOM05D003215 ORTHO05D003735 2.5e-44 182.2 126 63.5
HanXRQChr11g0328481 Helianthus annuus HOM05D003215 ORTHO05D003735 3.3e-44 181.8 125 64.0
Peaxi162Scf01390g00030 Petunia axillaris HOM05D003215 ORTHO05D003735 3.3e-44 181.8 125 66.4
AUR62027593 Chenopodium quinoa HOM05D003215 ORTHO05D003735 5.6e-44 181.0 126 62.7
Atru.chr3.3574 Acer truncatum HOM05D003215 ORTHO05D003735 7.3e-44 180.6 126 62.7
AUR62030249 Chenopodium quinoa HOM05D003215 ORTHO05D003735 7.3e-44 180.6 126 61.9
EL10Ac1g02277 Beta vulgaris HOM05D003215 ORTHO05D003735 9.6e-44 180.3 126 64.3
PSO210G2801 Papaver somniferum HOM05D003215 ORTHO05D003735 9.6e-44 180.3 127 64.6
PSO210G4537 Papaver somniferum HOM05D003215 ORTHO05D003735 9.6e-44 180.3 127 64.6
Sc24g0002070 Simmondsia chinensis HOM05D003215 ORTHO05D003735 9.6e-44 180.3 126 64.3
PSO210G2437 Papaver somniferum HOM05D003215 ORTHO05D003735 1.3e-43 179.9 127 64.6
Cc11_g08560 Coffea canephora HOM05D003215 ORTHO05D003735 2.1e-43 179.1 125 68.0
Sabra03G0123800 Salix brachista HOM05D003215 ORTHO05D003735 2.1e-43 179.1 125 66.4
Lalb_Chr01g0022221 Lupinus albus HOM05D003215 ORTHO05D003735 3.6e-43 178.3 125 62.4
Peaxi162Scf00102g00926 Petunia axillaris HOM05D003215 ORTHO05D003735 3.6e-43 178.3 125 63.2
CSS0012061 Camellia sinensis var. sinensis HOM05D003215 ORTHO05D003735 6.2e-43 177.6 127 64.6
PSO210G4587 Papaver somniferum HOM05D003215 ORTHO05D003735 6.2e-43 177.6 127 63.8
Peaxi162Scf01390g00031 Petunia axillaris HOM05D001168 ORTHO05D003735 6.2e-43 177.6 123 65.0
PGSC0003DMG400011852 Solanum tuberosum HOM05D003215 ORTHO05D003735 6.2e-43 177.6 125 65.6
CAN.G3121.3 Capsicum annuum HOM05D003215 ORTHO05D003735 8.1e-43 177.2 125 64.0
CAN.G861.12 Capsicum annuum HOM05D003215 ORTHO05D003735 8.1e-43 177.2 125 64.0
Solyc08g066190.2 Solanum lycopersicum HOM05D003215 ORTHO05D003735 1.1e-42 176.8 125 64.0
Sopen08g019870 Solanum pennellii HOM05D003215 ORTHO05D003735 1.1e-42 176.8 125 64.0
HanXRQChr10g0309901 Helianthus annuus HOM05D003215 ORTHO05D003735 1.4e-42 176.4 124 62.9
Nn7g37196 Nelumbo nucifera HOM05D003215 ORTHO05D003735 1.8e-42 176.0 125 63.2
BcaB06g26361 Brassica carinata HOM05D003215 ORTHO05D003735 2.4e-42 175.6 123 61.0
Migut.D01938 Erythranthe guttata HOM05D003215 ORTHO05D003735 2.4e-42 175.6 125 63.2
PSO675G7906 Papaver somniferum HOM05D003215 ORTHO05D003735 2.4e-42 175.6 127 62.2
Lj1g0005602 Lotus japonicus HOM05D003215 ORTHO05D003735 3.1e-42 175.3 125 62.4
TPR.G16275 Trifolium pratense HOM05D003215 ORTHO05D003735 4.0e-42 174.9 125 60.8
Ca_14134_v3 Cicer arietinum L. HOM05D003215 ORTHO05D003735 5.3e-42 174.5 125 62.4
Medtr8g077990 Medicago truncatula HOM05D003215 ORTHO05D003735 5.3e-42 174.5 125 60.8
Gohir.A13G231900 Gossypium hirsutum HOM05D003215 ORTHO05D003735 6.9e-42 174.1 126 60.3
Gohir.D13G237500 Gossypium hirsutum HOM05D003215 ORTHO05D003735 6.9e-42 174.1 126 60.3
Gorai.013G268300 Gossypium raimondii HOM05D003215 ORTHO05D003735 6.9e-42 174.1 126 60.3
A04p14060 Brassica napus HOM05D003215 ORTHO05D003735 9.0e-42 173.7 123 61.8
BraA04t17067Z Brassica rapa HOM05D003215 ORTHO05D003735 9.0e-42 173.7 123 61.8
Peaxi162Scf00029g00131 Petunia axillaris HOM05D003215 ORTHO05D003735 9.0e-42 173.7 125 63.2
BcaC02g08984 Brassica carinata HOM05D003215 ORTHO05D003735 1.2e-41 173.3 123 61.0
BolC4t26400H Brassica oleracea HOM05D003215 ORTHO05D003735 1.2e-41 173.3 123 61.0
BcaB06g27584 Brassica carinata HOM05D003215 ORTHO05D003735 1.5e-41 172.9 123 61.8
PSO210G0114 Papaver somniferum HOM05D003215 ORTHO05D003735 1.5e-41 172.9 127 63.0
Psat1g024480 Pisum sativum HOM05D003215 ORTHO05D003735 1.5e-41 172.9 125 59.2
Haze_25499 Corylus avellana HOM05D003215 ORTHO05D003735 2.0e-41 172.6 125 61.6
PSO170G2126 Papaver somniferum HOM05D003215 ORTHO05D003735 3.4e-41 171.8 127 63.0
SGA_v2.0_scaffold114G31828 Striga asiatica HOM05D003215 ORTHO05D003735 3.4e-41 171.8 125 60.8
ECA233G3624 Erigeron canadensis HOM05D003215 ORTHO05D003735 4.5e-41 171.4 125 60.0
C01p15060 Brassica napus HOM05D003215 ORTHO05D003735 9.9e-41 170.2 123 61.8
Phvul.007G154900 Phaseolus vulgaris HOM05D003215 ORTHO05D003735 1.3e-40 169.9 125 59.2
Aqoxy4G00232 Aquilegia oxysepala HOM05D003215 ORTHO05D003735 2.2e-40 169.1 127 61.4
Psat4g091440 Pisum sativum HOM05D003215 ORTHO05D003735 2.2e-40 169.1 125 60.0
Sp7g00890 Schrenkiella parvula HOM05D003215 ORTHO05D003735 2.2e-40 169.1 123 60.2
Aqoxy6G03074 Aquilegia oxysepala HOM05D003215 ORTHO05D003735 2.9e-40 168.7 127 61.4
ECA236G3716 Erigeron canadensis HOM05D003215 ORTHO05D003735 2.9e-40 168.7 125 60.0
BcaC05g28060 Brassica carinata HOM05D003215 ORTHO05D003735 3.8e-40 168.3 127 57.5
C05p40730 Brassica napus HOM05D003215 ORTHO05D003735 3.8e-40 168.3 127 57.5
BolC5t32818H Brassica oleracea HOM05D003215 ORTHO05D003735 3.8e-40 168.3 127 57.5
Migut.D01937 Erythranthe guttata HOM05D003215 ORTHO05D003735 4.9e-40 167.9 127 62.2
BcaC09g51256 Brassica carinata HOM05D003215 ORTHO05D003735 6.4e-40 167.5 123 61.0
BolC1t01455H Brassica oleracea HOM05D003215 ORTHO05D003735 6.4e-40 167.5 123 61.0
Nitab4.5_0000712g0010 Nicotiana tabacum HOM05D003215 ORTHO05D003735 6.4e-40 167.5 125 62.4
SGA_v2.0_scaffold124G33628 Striga asiatica HOM05D003215 ORTHO05D003735 6.4e-40 167.5 123 60.2
MBI05_g27786_MAGBIO Magnolia biondii HOM05D003215 ORTHO05D003735 1.9e-39 166.0 117 62.4
Aqoxy2G04188 Aquilegia oxysepala HOM05D003215 ORTHO05D003735 2.4e-39 165.6 127 60.6
Nitab4.5_0000185g0060 Nicotiana tabacum HOM05D003215 ORTHO05D003735 2.4e-39 165.6 125 60.0
Nitab4.5_0000712g0040 Nicotiana tabacum HOM05D003215 ORTHO05D003735 2.4e-39 165.6 123 61.8
RcHm_v2.0_Chr7g0227601 Rosa chinensis HOM05D003215 ORTHO05D003735 2.4e-39 165.6 80 92.5
Aa31LG9G1030 Aethionema arabicum HOM05D003215 ORTHO05D003735 5.4e-39 164.5 127 60.6
Thhalv10027663m.g Eutrema salsugineum HOM05D003215 ORTHO05D003735 9.3e-39 163.7 123 56.9
Nitab4.5_0000185g0040 Nicotiana tabacum HOM05D003215 ORTHO05D003735 9.3e-39 163.7 123 61.0
THA.LOC104815051 Tarenaya hassleriana HOM05D003215 ORTHO05D003735 1.6e-38 162.9 126 59.5
THA.LOC104816721 Tarenaya hassleriana HOM05D003215 ORTHO05D003735 1.6e-38 162.9 126 59.5
Aa31LG9G1040 Aethionema arabicum HOM05D003215 ORTHO05D003735 3.5e-38 161.8 126 57.1
BcaNung03841 Brassica carinata HOM05D003215 ORTHO05D003735 3.5e-38 161.8 123 59.3
Solyc08g007300.3 Solanum lycopersicum HOM05D003215 ORTHO05D003735 3.5e-38 161.8 125 60.8
Sopen08g003240 Solanum pennellii HOM05D003215 ORTHO05D003735 3.5e-38 161.8 125 60.8
Aa31LG9G750 Aethionema arabicum HOM05D003215 ORTHO05D003735 6.0e-38 161.0 123 57.7
Lsat_1_v5_gn_7_104201 Lactuca sativa HOM05D003215 ORTHO05D003735 7.9e-38 160.6 125 57.6
SHI08388 Sapria himalayana HOM05D003215 ORTHO05D003735 7.9e-38 160.6 121 58.7
Lj3g0014709 Lotus japonicus HOM05D003215 ORTHO05D003735 1.3e-37 159.8 125 60.0
Nitab4.5_0000712g0020 Nicotiana tabacum HOM05D003215 ORTHO05D003735 1.3e-37 159.8 125 60.0
AL7G48530 Arabidopsis lyrata HOM05D003215 ORTHO05D003735 2.3e-37 159.1 123 56.9
TPR.G12921 Trifolium pratense HOM05D003215 ORTHO05D003735 2.3e-37 159.1 117 57.3
Carub.0007s3447 Capsella rubella HOM05D003215 ORTHO05D003735 8.7e-37 157.1 123 56.9
AT5G41020 Arabidopsis thaliana HOM05D003215 ORTHO05D003735 2.5e-36 155.6 123 56.1
CARHR213350 Cardamine hirsuta HOM05D003215 ORTHO05D003735 2.5e-36 155.6 123 55.3
THA.LOC104815151 Tarenaya hassleriana HOM05D003215 ORTHO05D003735 7.4e-36 154.1 104 66.3
Eucgr.H02514 Eucalyptus grandis HOM05D003215 ORTHO05D003735 8.1e-35 150.6 100 68.0
Zm00001eb172100 Zea mays HOM05D003215 ORTHO05D003735 2.4e-34 149.1 125 52.8
CAN.G861.14 Capsicum annuum HOM05D003215 ORTHO05D003735 6.9e-34 147.5 97 67.0
Medtr1g076600 Medicago truncatula HOM05D003215 ORTHO05D003735 2.0e-33 146.0 113 58.4
Atru.chr3.3575 Acer truncatum HOM05D003215 ORTHO05D003735 5.8e-33 144.4 95 64.2
CDE11G0705 Ceratophyllum demersum HOM05D003215 ORTHO05D003735 1.6e-30 136.3 114 57.0
HPP92_007494 Vanilla planifolia HOM05D003215 ORTHO05D003735 4.6e-30 134.8 114 50.0
EL10Ac6g13885 Beta vulgaris HOM05D003215 ORTHO05D003735 3.3e-28 128.6 126 53.2
Medtr7g029435 Medicago truncatula HOM05D003215 ORTHO05D003735 2.1e-27 125.9 91 58.2
BcaC09g51258 Brassica carinata HOM05D003215 ORTHO05D003735 4.5e-25 118.2 89 58.4
AagrBONN_evm.TU.Sc2ySwM_344.2899 Anthoceros agrestis HOM05D003215 ORTHO05D003735 5.8e-25 117.9 123 43.1
BcaNung03843 Brassica carinata HOM05D003215 ORTHO05D003735 2.7e-22 109.0 81 56.8
Oeu020912.1 Olea europaea HOM05D003215 ORTHO05D003735 5.1e-21 104.8 79 59.5
ATR0751G201 Amborella trichopoda HOM05D003215 ORTHO05D003735 4.3e-20 101.7 87 50.6
Eucgr.H02511 Eucalyptus grandis HOM05D003215 ORTHO05D003735 1.3e-19 100.1 65 67.7
Nitab4.5_0003367g0010 Nicotiana tabacum HOM05D003215 ORTHO05D003735 6.3e-19 97.8 64 62.5
Mapoly0158s0003 Marchantia polymorpha HOM05D003215 ORTHO05D003735 1.0e-16 90.5 117 41.0
Pp3c4_2120 Physcomitrium patens HOM05D003215 ORTHO05D003735 5.0e-16 88.2 117 36.8
TPR.G20272 Trifolium pratense HOM05D003215 ORTHO05D003735 3.6e-14 82.0 50 66.0
Peaxi162Scf00413g00068 Petunia axillaris HOM05D003215 ORTHO05D003735 1.1e-12 77.0 122 41.0
Peaxi162Scf25743g00028 Petunia axillaris HOM05D003215 ORTHO05D003735 2.6e-09 65.9 47 61.7
Peaxi162Scf00102g01055 Petunia axillaris HOM05D003215 ORTHO05D003735 7.7e-09 64.3 47 61.7
Peaxi162Scf25743g00024 Petunia axillaris HOM05D003215 ORTHO05D003735 7.7e-09 64.3 47 61.7
PRCOL_00005270 Prasinoderma coloniale HOM05D003215 ORTHO05D003735 7.7e-09 64.3 103 35.9
MCO03G213 Micromonas commoda HOM05D003215 ORTHO05D003735 2.2e-08 62.8 114 32.5
SEGI_39348 Sequoiadendron giganteum HOM05D003215 ORTHO05D003735 4.2e-07 58.5 76 39.5


User provided reference genes

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