Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 1.1e-40 169.5 83 100.0
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 9.7e-37 156.4 77 96.1
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 2.4e-35 151.8 82 87.8
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 9.1e-35 149.8 78 91.0
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 9.1e-35 149.8 82 85.4
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 2.6e-34 148.3 78 88.5
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 4.5e-34 147.5 79 86.1
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 7.7e-34 146.7 82 82.9
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.0e-33 146.4 78 87.2
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 1.0e-33 146.4 79 84.8
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.3e-33 146.0 78 87.2
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.3e-33 146.0 78 87.2
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 1.7e-33 145.6 94 78.7
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.7e-33 145.6 79 86.1
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.7e-33 145.6 78 85.9
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 1.7e-33 145.6 78 87.2
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 2.9e-33 144.8 78 87.2
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 3.8e-33 144.4 83 80.7
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 3.8e-33 144.4 77 87.0
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 3.8e-33 144.4 83 80.7
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 5.0e-33 144.1 83 83.1
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 5.0e-33 144.1 78 85.9
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 5.0e-33 144.1 77 84.4
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 6.5e-33 143.7 77 84.4
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 8.5e-33 143.3 79 82.3
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 8.5e-33 143.3 82 80.5
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 8.5e-33 143.3 78 85.9
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 8.5e-33 143.3 81 80.2
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 8.5e-33 143.3 82 80.5
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 1.1e-32 142.9 78 83.3
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 1.1e-32 142.9 78 85.9
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 1.1e-32 142.9 82 81.7
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 1.4e-32 142.5 78 83.3
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.4e-32 142.5 83 81.9
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.4e-32 142.5 77 84.4
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 1.4e-32 142.5 78 83.3
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 1.9e-32 142.1 78 82.1
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 1.9e-32 142.1 78 82.1
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 2.5e-32 141.7 80 80.0
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 5.5e-32 140.6 82 78.0
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 5.5e-32 140.6 77 84.4
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 7.2e-32 140.2 78 80.8
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 7.2e-32 140.2 82 78.0
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 7.2e-32 140.2 78 80.8
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 9.4e-32 139.8 82 78.0
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 1.2e-31 139.4 77 81.8
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 1.2e-31 139.4 77 81.8
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 1.2e-31 139.4 83 77.1
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 1.6e-31 139.0 79 78.5
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 1.6e-31 139.0 77 80.5
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 2.1e-31 138.7 75 84.0
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 2.1e-31 138.7 78 80.8
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 2.7e-31 138.3 75 84.0
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 3.6e-31 137.9 78 82.1
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 3.6e-31 137.9 83 78.3
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 3.6e-31 137.9 78 78.2
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 4.7e-31 137.5 82 76.8
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 6.1e-31 137.1 79 79.7
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 7.9e-31 136.7 77 80.5
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.9e-31 136.7 78 84.6
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 7.9e-31 136.7 78 84.6
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 7.9e-31 136.7 78 79.5
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 7.9e-31 136.7 78 80.8
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 1.0e-30 136.3 78 79.5
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.8e-30 135.6 78 76.9
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 1.8e-30 135.6 77 79.2
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 2.3e-30 135.2 79 75.9
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 2.3e-30 135.2 77 79.2
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.3e-30 135.2 92 71.7
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 2.3e-30 135.2 80 73.8
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 3.0e-30 134.8 77 80.5
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 3.0e-30 134.8 77 80.5
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 3.0e-30 134.8 78 79.5
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 8.8e-30 133.3 77 79.2
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 8.8e-30 133.3 83 73.5
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.1e-29 132.9 79 78.5
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.1e-29 132.9 78 75.6
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.5e-29 132.5 79 78.5
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 1.5e-29 132.5 79 78.5
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 2.0e-29 132.1 75 77.3
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 2.6e-29 131.7 82 76.8
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 5.7e-29 130.6 79 77.2
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 9.7e-29 129.8 79 77.2
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 9.7e-29 129.8 79 77.2
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 9.7e-29 129.8 75 77.3
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 2.8e-28 128.3 78 75.6
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 3.7e-28 127.9 79 74.7
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 4.8e-28 127.5 79 74.7
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 4.8e-28 127.5 79 74.7
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 4.8e-28 127.5 79 74.7
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 1.1e-27 126.3 75 76.0
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 1.4e-27 125.9 75 76.0
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 1.4e-27 125.9 75 76.0
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.8e-27 125.6 78 78.2
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 2.4e-27 125.2 75 74.7
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 2.4e-27 125.2 75 74.7
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 2.4e-27 125.2 75 74.7
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 9.1e-27 123.2 113 55.8
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.0e-26 122.1 68 85.3
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 3.5e-26 121.3 67 86.6
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.0e-25 117.5 61 83.6
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 6.5e-25 117.1 64 87.5
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 1.1e-24 116.3 66 81.8
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.2e-24 114.8 69 82.6
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 3.2e-24 114.8 64 84.4
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 4.2e-24 114.4 69 81.2
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 7.2e-24 113.6 72 75.0
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 9.4e-24 113.2 64 84.4
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.2e-23 112.8 67 80.6
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.2e-23 112.8 70 80.0
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 1.2e-23 112.8 62 85.5
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 1.0e-22 109.8 74 63.5
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 3.0e-22 108.2 67 74.6
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 1.1e-21 106.3 67 70.1
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 5.7e-21 104.0 72 70.8
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 1.3e-20 102.8 64 79.7
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 2.2e-20 102.1 64 76.6
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 2.8e-20 101.7 50 82.0
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 8.2e-20 100.1 64 79.7
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 3.1e-19 98.2 77 58.4
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 1.2e-18 96.3 62 74.2
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 2.0e-18 95.5 61 70.5
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 2.0e-18 95.5 61 70.5
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 5.9e-18 94.0 50 76.0
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 2.9e-17 91.7 49 75.5
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 2.9e-17 91.7 49 75.5
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 2.9e-17 91.7 49 75.5
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 7.2e-16 87.0 66 62.1
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 1.5e-13 79.3 57 66.7
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 5.4e-11 70.9 54 64.8
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 4.5e-10 67.8 60 58.3
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 5.9e-10 67.4 39 87.2
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 7.7e-10 67.0 36 75.0
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 7.7e-10 67.0 38 71.1
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 5.0e-09 64.3 71 39.4
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 7.2e-08 60.5 39 61.5
Cre16.g682587 Chlamydomonas reinhardtii HOM05D005881 ORTHO05D007298 2.3e-06 55.5 82 31.7


User provided reference genes

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