Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 2.2e-220 768.8 438 100.0
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.4e-190 669.8 438 81.5
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 5.2e-190 667.9 438 85.6
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.4e-187 659.1 460 83.0
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.9e-184 649.4 465 80.6
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 6.3e-135 485.0 437 65.9
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 4.2e-131 472.2 437 58.4
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.0e-129 467.6 437 58.1
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 1.7e-124 450.3 437 57.0
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 3.2e-123 446.0 352 66.5
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 2.8e-119 433.0 437 59.7
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 1.1e-118 431.0 436 53.7
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 5.9e-117 425.2 437 52.6
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 2.2e-116 423.3 417 54.7
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 3.8e-116 422.5 437 53.1
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 1.9e-115 420.2 376 59.8
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 1.9e-115 420.2 436 54.4
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 2.5e-115 419.9 436 53.0
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 7.2e-115 418.3 437 56.3
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 4.7e-114 415.6 438 57.8
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 1.0e-113 414.5 439 51.7
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 1.4e-113 414.1 438 51.4
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 2.2e-111 406.8 373 58.2
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 3.7e-111 406.0 542 48.0
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 8.3e-111 404.8 436 50.0
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.8e-110 403.7 425 52.9
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 4.1e-110 402.5 432 56.5
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 9.1e-110 401.4 434 54.4
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 1.2e-109 401.0 438 52.3
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 4.5e-109 399.1 438 50.5
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 5.9e-109 398.7 437 51.7
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.7e-108 397.1 437 51.3
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.9e-107 393.7 438 51.4
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 2.7e-106 389.8 437 54.5
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 3.6e-106 389.4 428 49.8
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 1.8e-105 387.1 375 55.7
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 3.4e-104 382.9 438 54.3
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 6.3e-103 378.6 474 46.8
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 1.8e-102 377.1 437 46.0
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 1.7e-100 370.5 437 47.4
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 8.6e-100 368.2 369 54.7
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 8.6e-100 368.2 439 53.5
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 8.6e-100 368.2 437 46.0
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 1.9e-99 367.1 436 46.1
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 7.2e-99 365.2 432 46.1
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 1.2e-98 364.4 438 50.0
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 2.1e-98 363.6 436 45.9
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 6.1e-98 362.1 610 39.2
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 1.8e-97 360.5 435 51.0
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 5.2e-97 359.0 436 44.0
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.5e-96 357.5 425 45.9
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 2.6e-96 356.7 465 43.7
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 3.4e-96 356.3 435 46.2
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 7.5e-96 355.1 435 46.0
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 9.8e-96 354.8 437 47.8
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 1.7e-95 354.0 437 44.6
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 2.2e-95 353.6 437 45.8
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 6.3e-95 352.1 437 44.9
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 1.8e-94 350.5 436 46.6
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 4.1e-94 349.4 436 46.1
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 9.2e-94 348.2 432 44.9
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 3.9e-92 342.8 440 46.1
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 8.6e-92 341.7 436 46.3
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 8.6e-92 341.7 424 43.6
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 1.5e-91 340.9 424 43.9
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.9e-91 340.5 322 57.1
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 7.3e-91 338.6 453 43.7
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 7.3e-91 338.6 453 43.7
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 1.2e-90 337.8 444 44.4
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 1.6e-90 337.4 446 43.9
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 5.2e-89 332.4 453 43.5
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 6.8e-89 332.0 439 45.1
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 6.8e-89 332.0 436 46.8
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 8.9e-89 331.6 437 45.3
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 2.0e-88 330.5 439 44.6
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 4.4e-88 329.3 436 42.9
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 5.8e-88 328.9 436 44.0
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 5.8e-88 328.9 434 41.9
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 1.3e-87 327.8 592 37.8
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 2.2e-87 327.0 437 45.3
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 2.2e-87 327.0 436 44.7
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 2.9e-87 326.6 436 48.2
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 3.7e-87 326.2 437 44.4
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 2.4e-86 323.6 303 57.4
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 2.0e-85 320.5 437 47.6
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 6.0e-85 318.9 435 46.4
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 7.8e-85 318.5 437 45.5
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 3.0e-84 316.6 439 41.2
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 5.0e-84 315.8 495 39.6
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 5.0e-84 315.8 441 48.8
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 8.6e-84 315.1 441 42.4
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 4.3e-83 312.8 441 44.2
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 2.8e-82 310.1 430 42.1
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.4e-81 307.8 377 48.0
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 6.8e-81 305.4 437 43.2
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 1.5e-80 304.3 356 53.9
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 1.7e-79 300.8 438 41.1
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 1.1e-78 298.1 428 43.7
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 4.6e-77 292.7 462 39.2
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 2.3e-76 290.4 443 46.0
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.9e-75 287.3 423 45.9
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 3.3e-75 286.6 369 44.7
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.2e-74 284.6 377 45.4
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 5.2e-73 279.3 423 39.7
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 1.6e-69 267.7 321 46.4
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 3.5e-69 266.5 452 38.1
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 5.6e-67 259.2 337 44.5
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 1.6e-66 257.7 446 39.7
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 6.2e-66 255.8 247 51.4
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 5.8e-64 249.2 437 36.6
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 1.7e-60 237.7 287 46.0
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 4.3e-59 233.0 345 42.3
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 8.1e-58 228.8 479 33.2
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 1.4e-57 228.0 419 38.9
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.4e-57 227.3 424 38.0
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 1.7e-55 221.1 437 37.3
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.1e-54 218.4 220 51.4
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 3.3e-51 206.8 206 51.0
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 3.6e-50 203.4 378 34.9
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 4.0e-49 199.9 305 41.0
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 8.4e-47 192.2 273 41.4
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 2.1e-45 187.6 378 32.8
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.3e-44 184.9 413 33.9
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 1.8e-44 184.5 230 42.2
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 1.6e-42 177.9 221 49.8
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 1.9e-38 164.5 206 42.7
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 4.6e-37 159.8 339 33.0
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 2.3e-36 157.5 213 47.9
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 4.5e-32 143.3 355 30.7
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 4.5e-32 143.3 381 28.9
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 5.5e-30 136.3 97 66.0
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 1.2e-29 135.2 158 43.7
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 2.1e-29 134.4 174 47.7
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 1.5e-27 128.3 127 48.8
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 9.0e-25 119.0 250 30.4
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 1.4e-20 105.1 374 24.9
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.7e-19 99.8 98 48.0
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 5.7e-19 99.8 164 39.0
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.4e-17 95.1 209 33.0
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 2.4e-17 94.4 149 38.9
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 3.1e-17 94.0 161 36.6
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 4.1e-17 93.6 73 54.8
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 5.0e-15 86.7 82 56.1
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 6.5e-15 86.3 89 52.8
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 3.6e-13 80.5 74 59.5
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 1.0e-12 79.0 206 27.2
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 6.7e-12 76.3 137 38.7
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 2.2e-07 61.2 98 38.8
Cre01.g008450 Chlamydomonas reinhardtii HOM05D004546 ORTHO05D005419 2.9e-07 60.8 364 22.5
Pp3c12_6220 Physcomitrium patens HOM05D004546 ORTHO05D005419 3.2e-06 57.4 371 21.6
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 4.2e-06 57.0 66 50.0
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 9.4e-06 55.8 106 32.1
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 9.4e-06 55.8 43 65.1


User provided reference genes

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