Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0221131 Rosa chinensis HOM05D008016 ORTHO05D004271 1.7e-72 275.8 128 100.0
Gohir.A09G103364 Gossypium hirsutum HOM05D008016 ORTHO05D004271 6.3e-35 151.0 83 89.2
Lalb_Chr03g0039361 Lupinus albus HOM05D008016 ORTHO05D004271 2.4e-34 149.1 86 86.0
arahy.Tifrunner.gnm1.ann1.LBLK2X Arachis hypogaea HOM05D008037 ORTHO05D004271 1.2e-33 146.7 130 63.8
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 1.5e-33 146.4 83 88.0
FAN26G0971 Fragaria x ananassa HOM05D008037 ORTHO05D004271 4.5e-33 144.8 127 59.8
Gohir.A07G174766 Gossypium hirsutum HOM05D008016 ORTHO05D004271 3.8e-32 141.7 80 86.2
Gohir.A13G086605 Gossypium hirsutum HOM05D008016 ORTHO05D004271 9.7e-28 127.1 83 80.7
FAN22G1916 Fragaria x ananassa HOM05D008037 ORTHO05D004271 3.7e-27 125.2 125 54.4
Gohir.A09G101825 Gossypium hirsutum HOM05D008016 ORTHO05D004271 2.4e-26 122.5 75 82.7
Migut.A01208 Erythranthe guttata HOM05D008016 ORTHO05D004271 9.1e-26 120.6 83 77.1
arahy.Tifrunner.gnm1.ann1.ASR258 Arachis hypogaea HOM05D008037 ORTHO05D004271 1.5e-25 119.8 126 54.8
arahy.Tifrunner.gnm1.ann1.20TFSQ Arachis hypogaea HOM05D008037 ORTHO05D004271 3.5e-25 118.6 130 53.1
arahy.Tifrunner.gnm1.ann1.P2FSG5 Arachis hypogaea HOM05D008037 ORTHO05D004271 3.5e-25 118.6 130 53.1
arahy.Tifrunner.gnm1.ann1.WFJR7S Arachis hypogaea HOM05D008037 ORTHO05D004271 4.5e-25 118.2 119 56.3
arahy.Tifrunner.gnm1.ann1.KJ09M7 Arachis hypogaea HOM05D008037 ORTHO05D004271 5.9e-25 117.9 119 54.6
Lsat_1_v5_gn_2_98441 Lactuca sativa HOM05D008016 ORTHO05D004271 2.5e-23 112.5 80 70.0
COL.COLO4_33462 Corchorus olitorius HOM05D008016 ORTHO05D004271 2.1e-22 109.4 119 52.1
Glyma.15G274900 Glycine max HOM05D008016 ORTHO05D004271 4.7e-22 108.2 75 74.7
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 8.8e-21 104.0 122 50.8
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 1.5e-20 103.2 110 51.8
arahy.Tifrunner.gnm1.ann1.KSIE27 Arachis hypogaea HOM05D008037 ORTHO05D004271 7.4e-20 100.9 98 56.1
RcHm_v2.0_Chr4g0392721 Rosa chinensis HOM05D008016 ORTHO05D004271 1.8e-18 96.3 88 63.6
Nitab4.5_0004841g0080 Nicotiana tabacum HOM05D008037 ORTHO05D004271 9.1e-18 94.0 89 59.6
Ca_02733_v3 Cicer arietinum L. HOM05D008016 ORTHO05D009823 2.6e-17 92.4 55 83.6
Solyc11g044665.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 2.6e-17 92.4 88 59.1
Sopen10g016570 Solanum pennellii HOM05D008037 ORTHO05D004271 2.6e-17 92.4 91 56.0
Gohir.1Z049482 Gossypium hirsutum HOM05D008016 ORTHO05D004271 5.9e-17 91.3 52 86.5
BraSC59t46557Z Brassica rapa HOM05D008016 ORTHO05D004271 1.0e-16 90.5 52 86.5
BolSC44t60833H Brassica oleracea HOM05D008016 ORTHO05D004271 1.3e-16 90.1 91 57.1
Nitab4.5_0001170g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.3e-16 90.1 97 54.6
ClCG11G009640 Citrullus lanatus HOM05D008354 ORTHO05D010055 1.7e-16 89.7 42 92.9
Lalb_Chr15g0080721 Lupinus albus HOM05D008016 ORTHO05D004271 2.2e-16 89.4 55 81.8
C04p22520 Brassica napus HOM05D008016 ORTHO05D004271 6.5e-16 87.8 111 49.5
BolSC45t60920H Brassica oleracea HOM05D008016 ORTHO05D010588 6.5e-16 87.8 111 49.5
BraSC25t45922Z Brassica rapa HOM05D008016 ORTHO05D010588 6.5e-16 87.8 111 49.5
MBI08_g48225_MAGBIO Magnolia biondii HOM05D008037 ORTHO05D004271 8.5e-16 87.4 114 45.6
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 8.5e-16 87.4 118 50.0
BolSC29t60557H Brassica oleracea HOM05D008016 ORTHO05D010588 1.5e-15 86.7 91 56.0
BolSC35t60714H Brassica oleracea HOM05D008016 ORTHO05D004271 1.5e-15 86.7 91 56.0
BolSC46t60968H Brassica oleracea HOM05D008016 ORTHO05D010588 1.5e-15 86.7 91 56.0
BraSC103t45418Z Brassica rapa HOM05D008016 ORTHO05D010588 1.5e-15 86.7 91 56.0
BraSC103t45496Z Brassica rapa HOM05D008016 ORTHO05D004271 1.5e-15 86.7 91 56.0
BraSC25t45901Z Brassica rapa HOM05D008016 ORTHO05D010588 1.5e-15 86.7 91 56.0
arahy.Tifrunner.gnm1.ann1.61DFKT Arachis hypogaea HOM05D008037 ORTHO05D004271 4.2e-15 85.1 44 90.9
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 7.2e-15 84.3 47 89.4
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 7.2e-15 84.3 47 89.4
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 7.2e-15 84.3 47 89.4
Gohir.D07G151450 Gossypium hirsutum HOM05D008016 ORTHO05D004271 2.7e-14 82.4 88 51.1
Nitab4.5_0005831g0110 Nicotiana tabacum HOM05D008016 ORTHO05D011667 3.6e-14 82.0 54 75.9
Nitab4.5_0001170g0110 Nicotiana tabacum HOM05D008016 ORTHO05D004271 6.1e-14 81.3 52 78.8
Sed0000516 Sechium edule HOM05D008037 ORTHO05D004271 6.1e-14 81.3 77 59.7
Solyc11g021160.1 Solanum lycopersicum HOM05D001966 ORTHO05D010055 8.0e-14 80.9 112 42.0
Solyc06g043035.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 1.0e-13 80.5 52 80.8
RcHm_v2.0_Chr2g0095251 Rosa chinensis HOM05D008016 ORTHO05D004271 4.0e-13 78.6 37 91.9
Nitab4.5_0007400g0090 Nicotiana tabacum HOM05D008016 ORTHO05D004271 8.8e-13 77.4 53 77.4
COL.COLO4_03213 Corchorus olitorius HOM05D001966 ORTHO05D010986 3.4e-12 75.5 38 89.5
Sed0021589 Sechium edule HOM05D008016 ORTHO05D004271 9.8e-12 73.9 66 62.1
BcaC04g20781 Brassica carinata HOM05D001966 ORTHO05D010449 3.7e-11 72.0 35 88.6
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 3.7e-11 72.0 35 88.6
Oeu040617.1 Olea europaea HOM05D008016 ORTHO05D004271 6.3e-11 71.2 37 83.8
Solyc12g099150.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 2.4e-10 69.3 48 72.9
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 1.6e-09 66.6 103 43.7
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 1.6e-09 66.6 88 45.5
EL10As10g23963 Beta vulgaris HOM05D008037 ORTHO05D004271 2.0e-09 66.2 138 36.2
CDE02G0533 Ceratophyllum demersum HOM05D008037 ORTHO05D004271 2.0e-09 66.2 38 78.9
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 2.7e-09 65.9 32 93.8
Nitab4.5_0012234g0010 Nicotiana tabacum HOM05D008037 ORTHO05D004271 2.7e-09 65.9 47 61.7
Hund25912 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund27633 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund27757 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund27833 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund28332 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund28440 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund28538 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund28614 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund28956 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund28981 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund29028 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund29091 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund29181 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund29249 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund29256 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund29263 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund29290 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund29318 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund29436 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund29853 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund30002 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund30263 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund30448 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund30632 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Hund30993 Selenicereus undatus HOM05D008037 ORTHO05D004271 2.7e-09 65.9 138 35.5
Solyc09g011150.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 2.7e-09 65.9 33 90.9
Potri.008G221801 Populus trichocarpa HOM05D008037 ORTHO05D004271 3.5e-09 65.5 32 90.6
Nitab4.5_0000066g0170 Nicotiana tabacum HOM05D008037 ORTHO05D004271 4.5e-09 65.1 36 77.8
Nitab4.5_0005831g0120 Nicotiana tabacum HOM05D008354 ORTHO05D010055 4.5e-09 65.1 32 87.5
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 4.5e-09 65.1 35 80.0
BolSC35t60682H Brassica oleracea HOM05D008016 ORTHO05D010588 1.3e-08 63.5 41 78.0
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 1.7e-08 63.2 33 84.8
arahy.Tifrunner.gnm1.ann1.XGYT8C Arachis hypogaea HOM05D008037 ORTHO05D004271 2.9e-08 62.4 32 87.5
SHI36397 Sapria himalayana HOM05D008037 ORTHO05D004271 2.9e-08 62.4 33 84.8
Solyc00g500344.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 2.9e-08 62.4 31 90.3
CAN.G134.6 Capsicum annuum HOM05D008037 ORTHO05D004271 3.8e-08 62.0 33 84.8
Hund28446 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund28585 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund28944 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund28949 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund28959 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund29107 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund29184 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund29242 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund29271 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund29275 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund29279 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund29283 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund29451 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund29497 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund29785 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund29912 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund30004 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund30064 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Hund30203 Selenicereus undatus HOM05D008259 ORTHO05D004271 5.0e-08 61.6 31 87.1
Nitab4.5_0001727g0130 Nicotiana tabacum HOM05D008037 ORTHO05D004271 8.5e-08 60.8 31 87.1
BcaC05g27379 Brassica carinata HOM05D008016 ORTHO05D021751 1.1e-07 60.5 62 62.9
Gohir.1Z049580 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.1e-07 60.5 91 41.8
Lalb_Chr20g0115041 Lupinus albus HOM05D008016 ORTHO05D004271 1.1e-07 60.5 35 80.0
Nitab4.5_0001761g0150 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.1e-07 60.5 31 83.9
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 1.5e-07 60.1 32 87.5
Sopen02g009090 Solanum pennellii HOM05D008037 ORTHO05D004271 2.5e-07 59.3 38 71.1
vmacro22395 Vaccinium macrocarpon HOM05D008016 ORTHO05D004271 3.2e-07 58.9 54 59.3
Migut.D01400 Erythranthe guttata HOM05D007952 ORTHO05D009823 4.2e-07 58.5 36 80.6
Solyc03g150126.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 4.2e-07 58.5 83 45.8
EL10Ac5g11360 Beta vulgaris HOM05D008037 ORTHO05D004271 5.5e-07 58.2 30 83.3
arahy.Tifrunner.gnm1.ann1.M1FG7L Arachis hypogaea HOM05D008354 ORTHO05D010055 7.2e-07 57.8 37 70.3
CiPaw.14G028800 Carya illinoinensis HOM05D008016 ORTHO05D004271 7.2e-07 57.8 62 53.2
Peaxi162Scf00210g00153 Petunia axillaris HOM05D008037 ORTHO05D004271 1.2e-06 57.0 32 81.2
Nitab4.5_0027992g0040 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.6e-06 56.6 32 81.2
Sc02g0004570 Simmondsia chinensis HOM05D008037 ORTHO05D004271 1.6e-06 56.6 30 83.3
EL10As18g24159 Beta vulgaris HOM05D008037 ORTHO05D004271 2.7e-06 55.8 48 60.4


User provided reference genes

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