Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 9.5e-50 199.9 103 100.0
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 7.5e-31 137.1 104 76.0
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 2.2e-30 135.6 106 73.6
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 5.4e-29 131.0 106 71.7
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 3.5e-28 128.3 105 68.6
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.0e-27 126.7 101 72.3
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 5.6e-26 120.9 106 66.0
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 5.6e-26 120.9 105 66.7
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.1e-25 119.0 105 65.7
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 2.1e-25 119.0 105 65.7
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 6.2e-25 117.5 104 63.5
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 6.8e-24 114.0 106 62.3
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.5e-23 112.8 97 67.0
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.2e-22 109.0 106 61.3
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 2.2e-22 109.0 106 58.5
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 2.9e-22 108.6 106 60.4
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 2.9e-22 108.6 103 55.3
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 4.9e-22 107.8 104 60.6
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 4.9e-22 107.8 104 57.7
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 6.4e-22 107.5 103 63.1
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 6.4e-22 107.5 106 60.4
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.4e-21 106.3 93 61.3
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 1.9e-21 105.9 104 59.6
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.4e-21 105.5 106 59.4
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 4.2e-21 104.8 105 57.1
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 5.4e-21 104.4 105 56.2
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 5.4e-21 104.4 105 56.2
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 7.1e-21 104.0 106 56.6
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 9.2e-21 103.6 81 69.1
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 1.6e-20 102.8 96 58.3
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 1.6e-20 102.8 103 59.2
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 2.1e-20 102.4 106 55.7
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 2.7e-20 102.1 105 57.1
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 3.5e-20 101.7 91 59.3
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 6.0e-20 100.9 97 57.7
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 6.0e-20 100.9 97 57.7
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 6.0e-20 100.9 91 61.5
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 7.8e-20 100.5 103 58.3
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 7.8e-20 100.5 93 59.1
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 1.7e-19 99.4 90 61.1
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 2.3e-19 99.0 106 56.6
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 3.0e-19 98.6 107 55.1
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 3.0e-19 98.6 94 60.6
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 3.9e-19 98.2 101 55.4
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 3.9e-19 98.2 94 58.5
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 3.9e-19 98.2 105 57.1
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 8.7e-19 97.1 94 59.6
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 8.7e-19 97.1 94 58.5
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 8.7e-19 97.1 94 60.6
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.1e-18 96.7 93 58.1
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.1e-18 96.7 106 54.7
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 1.1e-18 96.7 72 72.2
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 2.5e-18 95.5 106 53.8
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 2.5e-18 95.5 107 53.3
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.3e-18 95.1 106 54.7
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 3.3e-18 95.1 104 56.7
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 4.3e-18 94.7 98 59.2
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 4.3e-18 94.7 85 64.7
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 5.6e-18 94.4 103 52.4
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 7.3e-18 94.0 79 64.6
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 7.3e-18 94.0 91 57.1
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 7.3e-18 94.0 100 56.0
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 7.3e-18 94.0 103 56.3
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 9.6e-18 93.6 76 64.5
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 2.1e-17 92.4 93 55.9
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 2.8e-17 92.0 82 62.2
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 2.8e-17 92.0 89 56.2
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 3.6e-17 91.7 103 52.4
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 6.2e-17 90.9 113 53.1
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 8.1e-17 90.5 94 55.3
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 1.8e-16 89.4 95 51.6
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.1e-16 88.6 105 49.5
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 4.0e-16 88.2 107 50.5
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 4.0e-16 88.2 108 50.0
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 5.3e-16 87.8 98 55.1
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 5.3e-16 87.8 107 50.5
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 6.9e-16 87.4 105 51.4
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 9.0e-16 87.0 79 63.3
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 9.0e-16 87.0 104 52.9
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 1.2e-15 86.7 82 57.3
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.2e-15 86.7 93 53.8
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 1.5e-15 86.3 72 63.9
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 2.0e-15 85.9 94 52.1
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 2.0e-15 85.9 84 61.9
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.6e-15 85.5 103 48.5
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 2.6e-15 85.5 103 48.5
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 3.4e-15 85.1 98 54.1
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 3.4e-15 85.1 94 50.0
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 4.4e-15 84.7 98 51.0
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 5.8e-15 84.3 103 48.5
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 5.8e-15 84.3 94 52.1
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 5.8e-15 84.3 97 53.6
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 1.3e-14 83.2 94 51.1
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.7e-14 82.8 93 54.8
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.7e-14 82.8 93 51.6
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 2.2e-14 82.4 103 48.5
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 2.9e-14 82.0 74 63.5
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 2.9e-14 82.0 94 48.9
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 4.9e-14 81.3 77 63.6
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 4.9e-14 81.3 94 50.0
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 6.4e-14 80.9 56 75.0
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 6.4e-14 80.9 104 51.9
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 1.4e-13 79.7 95 48.4
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 1.4e-13 79.7 76 57.9
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 1.4e-13 79.7 74 58.1
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 1.4e-13 79.7 76 56.6
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.4e-13 79.0 93 49.5
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 3.2e-13 78.6 98 50.0
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 3.2e-13 78.6 89 49.4
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 7.1e-13 77.4 100 49.0
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.2e-12 76.6 111 47.7
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 1.2e-12 76.6 112 48.2
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 1.2e-12 76.6 46 87.0
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.6e-12 76.3 74 60.8
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.6e-12 76.3 92 47.8
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 2.1e-12 75.9 100 48.0
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 2.1e-12 75.9 95 50.5
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 2.7e-12 75.5 87 46.0
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 2.7e-12 75.5 75 57.3
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 4.6e-12 74.7 90 48.9
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 4.6e-12 74.7 77 53.2
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 6.0e-12 74.3 90 50.0
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 7.8e-12 73.9 99 44.4
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 7.8e-12 73.9 102 46.1
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 7.8e-12 73.9 99 47.5
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 7.8e-12 73.9 95 49.5
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 1.0e-11 73.6 99 45.5
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 1.3e-11 73.2 93 48.4
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 1.3e-11 73.2 103 47.6
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 3.0e-11 72.0 88 45.5
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 3.0e-11 72.0 91 48.4
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 5.1e-11 71.2 91 49.5
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 6.6e-11 70.9 97 48.5
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 6.6e-11 70.9 88 47.7
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 6.6e-11 70.9 56 66.1
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.9e-10 69.3 72 54.2
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 2.5e-10 68.9 100 46.0
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 2.5e-10 68.9 86 48.8
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.3e-10 68.6 93 46.2
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 3.3e-10 68.6 77 53.2
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 4.3e-10 68.2 91 47.3
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 7.3e-10 67.4 83 51.8
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 7.3e-10 67.4 106 45.3
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 7.3e-10 67.4 112 43.8
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 1.3e-09 66.6 88 47.7
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.3e-09 66.6 74 51.4
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 1.6e-09 66.2 105 47.6
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 1.6e-09 66.2 106 44.3
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 2.1e-09 65.9 90 44.4
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 2.1e-09 65.9 65 53.8
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 2.8e-09 65.5 100 45.0
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 6.2e-09 64.3 92 45.7
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 1.4e-08 63.2 100 39.0
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 1.4e-08 63.2 66 47.0
Lsat_1_v5_gn_7_75620 Lactuca sativa HOM05D004289 ORTHO05D233411 5.8e-07 57.8 103 44.7
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 2.2e-06 55.8 81 40.7
DCAR_001703 Daucus carota HOM05D004289 ORTHO05D005141 2.9e-06 55.5 103 38.8
Peaxi162Scf00011g00155 Petunia axillaris HOM05D004289 ORTHO05D005141 6.4e-06 54.3 83 43.4


User provided reference genes

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