Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 4.3e-43 178.3 124 100.0
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.5e-35 152.5 86 87.2
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.6e-34 149.8 86 84.9
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.1e-34 149.4 86 84.9
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 6.8e-33 144.4 86 83.7
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 1.1e-27 127.1 86 75.6
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 1.9e-27 126.3 86 76.7
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.9e-27 126.3 84 75.0
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.9e-27 126.3 84 75.0
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 2.5e-27 125.9 83 75.9
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 3.3e-27 125.6 84 73.8
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 3.3e-27 125.6 73 90.4
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 4.3e-27 125.2 85 70.6
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 9.6e-27 124.0 86 73.3
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 1.2e-26 123.6 84 73.8
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.1e-26 122.9 84 72.6
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 2.1e-26 122.9 84 71.4
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 2.8e-26 122.5 85 69.4
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 2.8e-26 122.5 85 69.4
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 6.2e-26 121.3 86 74.4
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 6.2e-26 121.3 84 71.4
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 8.1e-26 120.9 84 71.4
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 1.8e-25 119.8 85 67.1
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.8e-25 119.8 84 72.6
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 5.2e-25 118.2 86 67.4
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 3.4e-24 115.5 83 67.5
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 4.4e-24 115.2 85 68.2
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 5.8e-24 114.8 84 69.0
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 7.6e-24 114.4 83 69.9
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 7.6e-24 114.4 84 67.9
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 7.6e-24 114.4 84 70.2
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 7.6e-24 114.4 83 67.5
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 1.3e-23 113.6 83 67.5
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.3e-23 113.6 84 67.9
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 2.9e-23 112.5 84 69.0
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 2.9e-23 112.5 84 69.0
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 2.9e-23 112.5 84 69.0
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 3.8e-23 112.1 84 67.9
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 3.8e-23 112.1 84 66.7
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 4.9e-23 111.7 84 66.7
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 4.9e-23 111.7 86 66.3
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 6.4e-23 111.3 82 68.3
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 6.4e-23 111.3 82 68.3
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 8.4e-23 110.9 83 66.3
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 8.4e-23 110.9 83 66.3
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 1.4e-22 110.2 84 67.9
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.4e-22 110.2 82 67.1
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 1.9e-22 109.8 86 64.0
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 2.4e-22 109.4 86 62.8
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 3.2e-22 109.0 84 66.7
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 4.2e-22 108.6 86 65.1
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 4.2e-22 108.6 80 67.5
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 7.1e-22 107.8 83 66.3
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 9.3e-22 107.5 74 67.6
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 9.3e-22 107.5 84 64.3
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.2e-21 107.1 84 65.5
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 1.6e-21 106.7 80 67.5
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 1.6e-21 106.7 83 66.3
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 3.5e-21 105.5 84 61.9
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 6.0e-21 104.8 85 64.7
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 6.0e-21 104.8 85 64.7
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 6.0e-21 104.8 82 64.6
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 6.0e-21 104.8 80 65.0
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 7.8e-21 104.4 83 63.9
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.0e-20 104.0 84 59.5
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 1.0e-20 104.0 85 64.7
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 2.3e-20 102.8 85 61.2
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 2.3e-20 102.8 86 59.3
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 3.0e-20 102.4 84 64.3
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 3.0e-20 102.4 87 62.1
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 3.0e-20 102.4 85 61.2
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 3.9e-20 102.1 83 61.4
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 3.9e-20 102.1 83 61.4
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 6.6e-20 101.3 81 64.2
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 6.6e-20 101.3 85 61.2
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 6.6e-20 101.3 85 64.7
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 1.1e-19 100.5 84 63.1
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.3e-19 99.0 83 56.6
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 4.3e-19 98.6 85 64.7
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 4.3e-19 98.6 80 60.0
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 5.6e-19 98.2 86 58.1
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 5.6e-19 98.2 86 58.1
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 7.3e-19 97.8 83 56.6
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 7.3e-19 97.8 85 62.4
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 7.3e-19 97.8 80 62.5
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 9.6e-19 97.4 82 59.8
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 1.3e-18 97.1 85 58.8
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 1.6e-18 96.7 85 62.4
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 2.8e-18 95.9 80 61.2
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 3.6e-18 95.5 85 60.0
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 6.2e-18 94.7 84 58.3
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 6.2e-18 94.7 84 58.3
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 1.1e-17 94.0 84 61.9
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.4e-17 93.6 84 58.3
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.4e-17 93.6 76 61.8
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 1.4e-17 93.6 72 66.7
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 3.1e-17 92.4 84 59.5
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 6.9e-17 91.3 80 55.0
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 1.2e-16 90.5 76 61.8
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.5e-16 90.1 66 72.7
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 2.0e-16 89.7 72 65.3
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.0e-16 89.7 82 51.2
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 4.5e-16 88.6 76 57.9
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 9.9e-16 87.4 72 62.5
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 9.9e-16 87.4 80 51.2
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 1.7e-15 86.7 78 55.1
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.2e-15 86.3 79 51.9
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 4.9e-15 85.1 80 50.0
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 2.4e-14 82.8 84 50.0
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 9.3e-14 80.9 53 75.5
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 1.6e-13 80.1 59 67.8
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 3.9e-12 75.5 50 76.0
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 1.9e-11 73.2 83 45.8
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 1.9e-11 73.2 83 47.0
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 3.3e-11 72.4 83 47.0
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 5.6e-11 71.6 83 48.2
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 9.6e-11 70.9 83 47.0
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 9.6e-11 70.9 53 67.9
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 1.6e-10 70.1 83 45.8
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 3.7e-10 68.9 68 47.1
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 4.8e-10 68.6 83 45.8
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 1.8e-09 66.6 57 61.4
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 6.9e-09 64.7 83 47.0
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 2.0e-08 63.2 83 47.0
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 8.4e-07 57.8 83 43.4
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 8.4e-07 57.8 83 43.4
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 8.4e-07 57.8 83 43.4
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 8.4e-07 57.8 83 43.4


User provided reference genes

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