Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0219881 Rosa chinensis HOM05D001253 ORTHO05D001086 1.2e-45 186.0 90 100.0
RcHm_v2.0_Chr7g0214841 Rosa chinensis HOM05D001253 ORTHO05D001086 5.2e-28 127.5 74 82.4
FvH4_5g24450 Fragaria vesca HOM05D001253 ORTHO05D001086 9.9e-27 123.2 74 79.7
FAN13G0701 Fragaria x ananassa HOM05D001253 ORTHO05D001086 9.9e-27 123.2 74 79.7
FAN13G3297 Fragaria x ananassa HOM05D001253 ORTHO05D001086 9.9e-27 123.2 74 79.7
FAN18G0807 Fragaria x ananassa HOM05D001253 ORTHO05D001086 9.9e-27 123.2 74 79.7
FAN04G3194 Fragaria x ananassa HOM05D001253 ORTHO05D001086 4.9e-26 120.9 74 77.0
FAN08G2735 Fragaria x ananassa HOM05D001253 ORTHO05D001086 1.1e-25 119.8 74 77.0
MD04G1005900 Malus domestica HOM05D001253 ORTHO05D001086 4.7e-21 104.4 74 64.9
Prupe.5G016100 Prunus persica HOM05D001253 ORTHO05D001086 8.1e-21 103.6 74 64.9
QL12p002379 Quercus lobata HOM05D001253 ORTHO05D001086 4.9e-18 94.4 87 55.2
BcaB07g32809 Brassica carinata HOM05D001253 ORTHO05D001086 6.4e-18 94.0 74 59.5
CARHR287030 Cardamine hirsuta HOM05D001253 ORTHO05D001086 1.4e-17 92.8 74 59.5
CiPaw.11G076500 Carya illinoinensis HOM05D001253 ORTHO05D001086 3.2e-17 91.7 74 63.5
Eucgr.E01171 Eucalyptus grandis HOM05D001253 ORTHO05D001086 4.2e-17 91.3 74 60.8
BcaC05g27177 Brassica carinata HOM05D001253 ORTHO05D001086 1.2e-16 89.7 74 56.8
BolC5t31806H Brassica oleracea HOM05D001253 ORTHO05D001086 1.2e-16 89.7 74 56.8
A09p34700 Brassica napus HOM05D001253 ORTHO05D001086 1.6e-16 89.4 74 56.8
C05p30740 Brassica napus HOM05D001253 ORTHO05D001086 2.1e-16 89.0 74 56.8
CANSAT21G1094 Cannabis sativa HOM05D001253 ORTHO05D001086 2.7e-16 88.6 74 59.5
PGR042G0379 Punica granatum HOM05D001253 ORTHO05D001086 2.7e-16 88.6 75 61.3
Sp1g27290 Schrenkiella parvula HOM05D001253 ORTHO05D001086 3.5e-16 88.2 74 55.4
Thhalv10009746m.g Eutrema salsugineum HOM05D001253 ORTHO05D001086 7.8e-16 87.0 74 55.4
Potri.001G128100 Populus trichocarpa HOM05D001253 ORTHO05D001086 7.8e-16 87.0 74 60.8
Haze_08026 Corylus avellana HOM05D001253 ORTHO05D001086 1.7e-15 85.9 74 56.8
BraA09t39006Z Brassica rapa HOM05D001253 ORTHO05D001086 2.3e-15 85.5 74 55.4
COL.COLO4_16724 Corchorus olitorius HOM05D001253 ORTHO05D001086 2.3e-15 85.5 74 54.1
AL1G49560 Arabidopsis lyrata HOM05D001253 ORTHO05D001086 5.1e-15 84.3 74 58.1
Cfa012636 Carpinus fangiana HOM05D001253 ORTHO05D001086 5.1e-15 84.3 74 56.8
THA.LOC104798615 Tarenaya hassleriana HOM05D001253 ORTHO05D001086 6.6e-15 84.0 76 52.6
Ciclev10003778m.g Citrus clementina HOM05D001253 ORTHO05D001086 8.7e-15 83.6 74 59.5
Dinv37451 Davidia involucrata HOM05D001253 ORTHO05D001086 8.7e-15 83.6 74 56.8
Carub.0001s2991 Capsella rubella HOM05D001253 ORTHO05D001086 1.1e-14 83.2 74 54.1
TWI60G0146 Tripterygium wilfordii HOM05D001253 ORTHO05D001086 1.1e-14 83.2 71 53.5
Hma1.2p1_0294F.1_g116430 Hydrangea macrophylla HOM05D001253 ORTHO05D001086 1.5e-14 82.8 74 58.1
Thecc.03G322600 Theobroma cacao HOM05D001253 ORTHO05D001086 1.9e-14 82.4 65 60.0
Aa31LG2G14470 Aethionema arabicum HOM05D001253 ORTHO05D001086 3.3e-14 81.6 74 52.7
Ciclev10003717m.g Citrus clementina HOM05D001253 ORTHO05D001086 4.3e-14 81.3 74 58.1
Duzib205G2068 Durio zibethinus HOM05D001253 ORTHO05D001086 4.3e-14 81.3 74 54.1
GSVIVG01036917001 Vitis vinifera HOM05D001253 ORTHO05D001086 7.3e-14 80.5 65 58.5
AT1G31490 Arabidopsis thaliana HOM05D001253 ORTHO05D001086 1.6e-13 79.3 74 52.7
Sabra01G0098500 Salix brachista HOM05D001253 ORTHO05D001086 1.6e-13 79.3 74 54.1
MELO3C016208.2 Cucumis melo HOM05D001253 ORTHO05D001086 2.8e-13 78.6 74 52.7
Rhsim11G0040800 Rhododendron simsii HOM05D001253 ORTHO05D001086 2.8e-13 78.6 74 54.1
CsaV3_4G007040 Cucumis sativus L. HOM05D001253 ORTHO05D001086 3.6e-13 78.2 71 54.9
Manes.17G006300 Manihot esculenta HOM05D001253 ORTHO05D001086 3.6e-13 78.2 74 51.4
Nn1g09216 Nelumbo nucifera HOM05D001253 ORTHO05D001086 4.7e-13 77.8 71 53.5
Sed0009142 Sechium edule HOM05D001253 ORTHO05D001086 6.2e-13 77.4 74 52.7
Rhsim10G0168700 Rhododendron simsii HOM05D000045 ORTHO05D001086 8.1e-13 77.0 74 52.7
arahy.Tifrunner.gnm1.ann1.QU3TGI Arachis hypogaea HOM05D001253 ORTHO05D001086 1.4e-12 76.3 74 54.1
arahy.Tifrunner.gnm1.ann1.WU77LG Arachis hypogaea HOM05D001253 ORTHO05D001086 1.4e-12 76.3 74 54.1
TPR.G23176 Trifolium pratense HOM05D001253 ORTHO05D001086 1.8e-12 75.9 75 54.7
SalBow1G0838 Salvia bowleyana HOM05D001253 ORTHO05D001086 2.4e-12 75.5 74 52.7
SalBow8G2015 Salvia bowleyana HOM05D001253 ORTHO05D001086 2.4e-12 75.5 74 52.7
CSS0019416 Camellia sinensis var. sinensis HOM05D001253 ORTHO05D001086 3.1e-12 75.1 71 53.5
CSS0033022 Camellia sinensis var. sinensis HOM05D001253 ORTHO05D001086 3.1e-12 75.1 71 53.5
Actinidia30331 Actinidia chinensis HOM05D001253 ORTHO05D001086 5.3e-12 74.3 74 52.7
Atru.chr6.2126 Acer truncatum HOM05D001253 ORTHO05D001086 6.9e-12 73.9 74 48.6
VMungo0720G0130 Vigna mungo HOM05D001253 ORTHO05D001086 6.9e-12 73.9 74 51.4
Phvul.007G252100 Phaseolus vulgaris HOM05D001253 ORTHO05D001086 9.0e-12 73.6 74 50.0
ClCG07G011210 Citrullus lanatus HOM05D001253 ORTHO05D001086 1.2e-11 73.2 65 52.3
Peaxi162Scf00583g00004 Petunia axillaris HOM05D001253 ORTHO05D001086 2.0e-11 72.4 74 47.3
PGSC0003DMG400031348 Solanum tuberosum HOM05D001253 ORTHO05D001086 2.6e-11 72.0 62 54.8
Glyma.02G185100 Glycine max HOM05D001253 ORTHO05D001086 3.4e-11 71.6 74 48.6
Gorai.008G218100 Gossypium raimondii HOM05D001253 ORTHO05D001086 3.4e-11 71.6 65 50.8
Cc00_g12750 Coffea canephora HOM05D001253 ORTHO05D001086 5.8e-11 70.9 74 45.9
Lalb_Chr16g0380551 Lupinus albus HOM05D001253 ORTHO05D001086 7.6e-11 70.5 74 50.0
Gohir.A12G200500 Gossypium hirsutum HOM05D001253 ORTHO05D001086 1.3e-10 69.7 65 49.2
Gohir.D12G203300 Gossypium hirsutum HOM05D001253 ORTHO05D001086 1.7e-10 69.3 65 49.2
Psat2g144000 Pisum sativum HOM05D001253 ORTHO05D001086 2.9e-10 68.6 72 50.0
Lj2g0025689 Lotus japonicus HOM05D001253 ORTHO05D001086 6.4e-10 67.4 70 48.6
Nitab4.5_0000004g0140 Nicotiana tabacum HOM05D001253 ORTHO05D001086 6.4e-10 67.4 74 44.6
Medtr5g026320 Medicago truncatula HOM05D001253 ORTHO05D001086 1.1e-09 66.6 75 49.3
unitig_747.g21372 Utricularia gibba HOM05D001253 ORTHO05D001086 3.5e-08 61.6 62 45.2
Oeu057152.1 Olea europaea HOM05D001253 ORTHO05D001086 2.3e-07 58.9 65 46.2
Aqoxy3G02216 Aquilegia oxysepala HOM05D001253 ORTHO05D001086 6.6e-07 57.4 62 45.2
TAR374G0140 Trochodendron aralioides HOM05D001253 ORTHO05D001086 6.6e-07 57.4 77 37.7
Aqoxy7G00889 Aquilegia oxysepala HOM05D001253 ORTHO05D001086 1.9e-06 55.8 66 47.0


User provided reference genes

Program Settings