Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 1.0e-70 270.4 180 100.0
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 6.3e-65 251.1 180 73.9
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 3.4e-63 245.4 179 92.7
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.7e-60 235.7 174 92.5
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 6.1e-60 234.6 203 63.5
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 5.7e-58 228.0 182 86.8
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 3.7e-57 225.3 178 78.7
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 3.7e-57 225.3 178 85.4
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 4.8e-57 224.9 177 83.6
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 5.3e-56 221.5 179 63.1
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 9.1e-56 220.7 178 81.5
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 1.5e-55 219.9 177 84.2
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 2.0e-55 219.5 175 83.4
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 4.5e-55 218.4 178 83.7
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 7.7e-55 217.6 177 81.4
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 7.7e-55 217.6 177 81.4
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 7.7e-55 217.6 177 81.4
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 7.7e-55 217.6 177 81.4
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 7.7e-55 217.6 177 84.2
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 1.0e-54 217.2 178 84.8
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 1.0e-54 217.2 177 87.6
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 2.9e-54 215.7 177 82.5
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 2.9e-54 215.7 177 78.0
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 2.9e-54 215.7 178 83.7
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 5.0e-54 214.9 178 80.3
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 6.5e-54 214.5 178 80.9
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 6.5e-54 214.5 175 83.4
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 6.5e-54 214.5 175 83.4
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 6.5e-54 214.5 176 80.7
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 8.5e-54 214.2 178 81.5
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 1.1e-53 213.8 178 83.1
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 1.9e-53 213.0 177 78.5
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 2.5e-53 212.6 176 83.5
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 3.2e-53 212.2 177 80.2
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 3.2e-53 212.2 177 81.4
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 5.5e-53 211.5 177 80.2
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 7.2e-53 211.1 179 79.9
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 7.2e-53 211.1 175 82.9
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 7.2e-53 211.1 173 86.1
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 1.6e-52 209.9 174 82.2
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 2.1e-52 209.5 174 81.6
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 4.7e-52 208.4 174 83.3
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 4.7e-52 208.4 179 81.0
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 6.1e-52 208.0 179 63.7
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 1.0e-51 207.2 176 81.2
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 2.3e-51 206.1 178 80.9
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 5.2e-51 204.9 174 79.3
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 6.7e-51 204.5 174 80.5
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 6.7e-51 204.5 174 80.5
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 8.8e-51 204.1 179 79.9
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 8.8e-51 204.1 174 80.5
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 1.5e-50 203.4 176 81.2
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.0e-50 203.0 179 81.0
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 3.3e-50 202.2 176 80.1
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 3.3e-50 202.2 174 79.9
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 3.3e-50 202.2 176 81.8
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 4.4e-50 201.8 174 79.9
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 5.7e-50 201.4 174 82.2
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 1.7e-49 199.9 174 79.3
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 2.8e-49 199.1 178 59.6
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 3.7e-49 198.7 174 81.6
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 4.8e-49 198.4 175 80.6
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 6.3e-49 198.0 178 78.7
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 6.3e-49 198.0 176 80.7
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 6.3e-49 198.0 174 78.7
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 1.1e-48 197.2 179 78.2
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 1.4e-48 196.8 174 81.6
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 2.4e-48 196.1 179 79.3
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 2.4e-48 196.1 175 79.4
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 3.1e-48 195.7 177 72.9
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 7.0e-48 194.5 174 79.3
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 1.6e-47 193.4 176 79.0
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 1.6e-47 193.4 175 77.7
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 2.6e-47 192.6 176 79.0
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.6e-47 192.6 175 61.1
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 3.5e-47 192.2 176 79.0
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 5.9e-47 191.4 177 76.8
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 1.3e-46 190.3 176 58.0
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 2.2e-46 189.5 250 45.2
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 5.0e-46 188.3 175 78.3
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 1.1e-45 187.2 174 77.6
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 1.5e-45 186.8 176 56.8
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 1.5e-45 186.8 176 56.8
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 8.8e-43 177.6 175 74.9
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 8.8e-43 177.6 155 81.9
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 8.8e-43 177.6 178 52.2
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 1.2e-42 177.2 176 73.9
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 2.6e-42 176.0 174 50.6
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 1.7e-41 173.3 173 72.8
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 2.2e-41 172.9 192 48.4
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 2.4e-40 169.5 204 60.3
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 4.5e-39 165.2 175 48.6
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 7.7e-39 164.5 173 53.2
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 7.7e-39 164.5 145 83.4
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 1.0e-38 164.1 179 48.0
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 2.9e-38 162.5 151 53.0
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 8.5e-38 161.0 138 84.8
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 1.9e-37 159.8 195 67.2
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 1.2e-36 157.1 174 50.6
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 2.1e-36 156.4 138 73.2
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 2.7e-36 156.0 89 82.0
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 6.1e-36 154.8 139 84.2
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 1.8e-35 153.3 177 65.5
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 1.8e-35 153.3 176 68.8
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.7e-34 148.3 138 81.9
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 2.8e-33 146.0 90 76.7
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.7e-33 145.6 84 78.6
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.8e-32 143.3 154 74.0
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 4.1e-32 142.1 127 76.4
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 5.4e-32 141.7 167 68.9
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 7.0e-32 141.4 154 73.4
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 6.5e-30 134.8 89 73.0
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 8.0e-28 127.9 123 55.3
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 8.8e-27 124.4 216 38.0
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 2.0e-26 123.2 89 64.0
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 3.1e-24 115.9 118 52.5
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.0e-23 113.2 131 47.3
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 4.7e-20 102.1 165 38.8
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 1.5e-18 97.1 114 43.0
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 1.3e-14 84.0 102 47.1
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 4.0e-11 72.4 48 72.9
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 1.6e-07 60.5 36 77.8
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 2.7e-07 59.7 36 77.8
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.3e-06 56.6 36 72.2
SEGI_00674 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 8.6e-06 54.7 47 51.1


User provided reference genes

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