Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 2211.4 1099 100.0
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 2126.7 1099 96.2
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 2058.5 1181 88.4
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 2048.5 1181 88.1
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1983.0 1100 89.5
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1930.2 1098 87.4
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1923.7 1099 87.1
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1853.6 1007 92.3
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1820.1 1087 82.3
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1802.7 1091 80.4
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1789.2 1091 81.4
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1788.9 1088 81.3
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1782.3 1085 80.8
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1779.6 1090 80.7
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1777.3 1085 79.4
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1776.9 1087 79.6
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1769.2 1088 80.3
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1752.3 1085 78.5
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1751.1 1085 78.8
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1751.1 1085 79.4
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1750.7 1082 78.5
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1750.3 1082 79.1
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1748.4 1089 78.1
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1747.6 1085 78.8
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1745.7 1082 78.6
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1745.3 1069 79.8
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1742.2 1085 77.9
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1739.2 1082 77.6
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1737.2 1089 78.5
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1735.3 1087 78.0
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1735.3 1084 77.1
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1734.9 1089 78.4
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1734.2 1082 77.4
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1733.4 1088 77.9
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1730.3 1100 78.5
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1729.5 1091 77.8
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1727.2 1082 77.0
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1724.1 1082 77.4
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1722.2 1091 78.2
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1721.4 1087 77.7
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1713.7 1089 76.9
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1704.5 1088 77.9
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1704.1 1102 75.6
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1700.6 1089 76.7
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1696.4 1085 76.7
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1685.6 1117 74.5
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1685.2 1086 75.8
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1683.7 1081 75.9
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1683.7 1081 75.9
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1683.3 1087 75.3
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1682.5 1088 76.9
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1677.9 1087 76.7
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1676.4 1089 76.7
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1671.4 1088 76.0
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1665.6 1088 75.8
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1662.1 1088 74.4
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1661.7 1088 75.8
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1649.8 1090 74.2
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1647.1 1094 73.9
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1643.6 1082 74.5
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1642.1 1080 74.7
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1634.4 1087 73.8
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1634.4 1087 74.0
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1633.2 1114 72.9
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1631.7 1097 73.7
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1631.3 1087 73.7
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1629.4 1089 73.2
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1627.8 1087 73.2
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1626.3 1100 73.7
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1620.9 1092 73.2
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1614.7 1087 73.0
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1613.6 1101 71.7
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1611.3 1086 72.8
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1610.9 1091 72.5
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1610.5 1087 72.9
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1610.5 1087 72.9
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1610.1 1085 73.5
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1609.3 1071 74.0
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1609.0 1087 72.8
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1609.0 1085 73.5
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1605.5 1087 72.5
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1604.0 1087 72.5
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1603.2 1087 72.5
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1602.0 1087 72.4
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1601.6 1089 71.9
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1600.1 1083 72.6
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1598.2 1156 68.5
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1597.4 1087 71.8
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1595.5 1088 71.4
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1592.0 1088 73.3
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1591.6 1013 76.8
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1591.6 1085 71.4
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1589.3 1087 72.2
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1587.8 1086 72.9
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1585.1 1087 71.5
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1584.3 1109 71.9
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1583.9 1092 71.6
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1580.8 1119 70.1
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1579.7 1087 71.0
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1566.2 1081 70.5
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1555.4 1086 70.3
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1553.5 1000 76.6
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1552.0 1058 71.8
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1551.2 1108 69.5
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1536.9 1087 72.9
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1516.5 1088 68.2
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1506.5 1111 67.1
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1493.8 1081 68.8
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1486.1 982 73.7
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1449.5 1106 64.5
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1402.9 1089 66.9
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1270.0 791 79.5
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1189.1 1088 54.0
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1179.1 1084 53.7
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1174.8 690 83.0
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1163.3 1090 53.1
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1161.0 1088 52.8
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1158.7 1126 51.7
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1158.3 717 79.9
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1149.8 672 82.6
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1127.9 759 73.6
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 2.8e-301 1038.9 840 60.6
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.6e-278 962.6 817 60.0
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 2.3e-271 939.5 613 76.7
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 6.2e-256 888.3 961 48.6
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 9.5e-249 864.4 631 70.0
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.6e-243 847.0 633 65.6
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 8.7e-242 841.3 500 82.0
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.5e-225 787.3 976 47.5
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 2.7e-187 660.2 579 59.1
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.8e-165 586.6 429 69.9
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 3.4e-153 547.0 304 83.9
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 2.9e-144 517.3 392 68.9
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.8e-130 471.5 313 74.1
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 1.7e-88 332.0 298 59.1
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 4.2e-87 327.4 244 67.2
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 7.0e-66 256.9 205 63.4
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 3.5e-65 254.6 136 83.8
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.3e-48 199.5 138 63.0
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 1.2e-36 159.8 151 58.9
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 9.8e-36 156.8 160 55.0
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 1.6e-33 149.4 108 65.7
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 7.3e-31 140.6 156 48.7
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 7.3e-31 140.6 72 88.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 3.4e-28 131.7 88 72.7
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 1.2e-25 123.2 94 67.0
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 4.4e-20 104.8 147 44.2
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.8e-13 82.8 45 86.7
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 2.6e-12 79.0 49 67.3
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 1.3e-11 76.6 76 43.4
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 1.6e-09 69.7 33 97.0
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 1.6e-06 59.7 39 69.2


User provided reference genes

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