Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 1.1e-103 380.2 217 100.0
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.9e-92 342.8 222 91.9
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 9.5e-92 340.5 222 91.9
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.2e-91 340.1 222 82.4
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.8e-90 336.3 222 82.0
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 2.3e-90 335.9 222 82.0
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 3.2e-63 245.7 224 64.7
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 1.6e-54 216.9 168 69.0
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 1.6e-54 216.9 164 67.7
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 1.9e-52 209.9 175 71.4
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 5.3e-50 201.8 160 73.8
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 1.5e-49 200.3 167 66.5
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 2.0e-49 199.9 163 68.1
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 2.6e-49 199.5 163 70.6
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 2.6e-49 199.5 155 69.7
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 3.4e-49 199.1 168 61.9
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 4.5e-49 198.7 167 65.9
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 7.6e-49 198.0 205 57.1
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 1.7e-48 196.8 224 51.8
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 2.2e-48 196.4 167 61.7
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 2.9e-48 196.1 154 70.8
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 2.9e-48 196.1 172 66.9
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 3.8e-48 195.7 176 71.0
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 4.9e-48 195.3 151 66.9
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 4.9e-48 195.3 178 58.4
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 4.9e-48 195.3 178 58.4
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 6.4e-48 194.9 116 81.9
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 8.4e-48 194.5 222 58.1
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 8.4e-48 194.5 118 80.5
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 2.4e-47 193.0 186 66.7
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 2.4e-47 193.0 155 64.5
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 3.2e-47 192.6 160 60.6
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 4.2e-47 192.2 174 60.3
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 4.2e-47 192.2 187 56.7
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 1.2e-46 190.7 154 79.9
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 1.6e-46 190.3 111 84.7
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 2.1e-46 189.9 229 52.4
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 2.1e-46 189.9 182 59.9
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 3.5e-46 189.1 176 70.5
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 3.5e-46 189.1 154 69.5
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 4.6e-46 188.7 157 59.9
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 6.0e-46 188.3 164 61.0
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 6.0e-46 188.3 188 55.9
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 7.9e-46 188.0 182 62.1
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 1.3e-45 187.2 178 58.4
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 1.3e-45 187.2 118 76.3
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 1.8e-45 186.8 176 68.8
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 1.8e-45 186.8 192 56.8
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 2.3e-45 186.4 160 65.0
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 2.3e-45 186.4 164 60.4
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 2.3e-45 186.4 197 62.9
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 3.0e-45 186.0 161 77.6
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 3.0e-45 186.0 161 57.8
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 3.0e-45 186.0 110 84.5
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 3.9e-45 185.7 151 71.5
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 5.1e-45 185.3 166 59.0
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 5.1e-45 185.3 201 57.7
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 6.7e-45 184.9 115 79.1
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 6.7e-45 184.9 169 68.6
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 8.7e-45 184.5 160 60.0
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 8.7e-45 184.5 187 53.5
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 1.1e-44 184.1 192 52.6
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 1.1e-44 184.1 185 58.9
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 5.6e-44 181.8 155 74.2
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 9.6e-44 181.0 170 57.1
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 9.6e-44 181.0 166 69.9
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 1.6e-43 180.3 182 61.5
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 2.1e-43 179.9 164 59.8
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 2.1e-43 179.9 183 56.8
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 2.8e-43 179.5 212 58.5
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 8.1e-43 177.9 178 68.0
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 4.0e-42 175.6 156 72.4
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 1.2e-41 174.1 162 63.6
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 1.2e-41 174.1 161 69.6
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 1.5e-41 173.7 172 54.7
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 2.6e-41 172.9 110 75.5
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 4.5e-41 172.2 118 69.5
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 4.5e-41 172.2 112 73.2
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 7.6e-41 171.4 164 59.8
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 9.9e-41 171.0 116 73.3
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 4.9e-40 168.7 170 54.1
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 1.4e-39 167.2 118 70.3
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 1.4e-39 167.2 119 70.6
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 1.4e-39 167.2 119 70.6
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 1.9e-39 166.8 119 70.6
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 2.4e-39 166.4 119 70.6
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 2.4e-39 166.4 119 70.6
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 3.2e-39 166.0 118 69.5
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 5.5e-39 165.2 162 58.6
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 7.1e-39 164.9 113 71.7
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 9.3e-39 164.5 153 57.5
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 9.3e-39 164.5 119 69.7
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 1.6e-38 163.7 118 68.6
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 3.5e-38 162.5 119 68.9
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 5.6e-36 155.2 114 64.9
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 3.7e-35 152.5 107 72.0
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 1.1e-34 151.0 154 51.3
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 1.8e-34 150.2 117 65.8
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 1.8e-34 150.2 177 50.3
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 3.1e-34 149.4 101 71.3
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 6.9e-34 148.3 203 48.8
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 9.0e-34 147.9 118 65.3
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 3.4e-33 146.0 89 78.7
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 5.8e-33 145.2 107 62.6
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 5.8e-33 145.2 159 56.0
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 3.8e-32 142.5 164 61.0
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 5.7e-28 128.6 118 56.8
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 8.5e-24 114.8 113 47.8
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 5.5e-23 112.1 111 50.5
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 1.2e-22 110.9 109 52.3
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 4.6e-22 109.0 102 52.0
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 1.3e-21 107.5 106 56.6
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 7.4e-20 101.7 106 75.5
CBR_g51823 Chara braunii HOM05D006993 ORTHO05D008336 7.9e-14 81.6 72 51.4
RcHm_v2.0_Chr2g0176741 Rosa chinensis HOM05D000557 ORTHO05D002315 4.5e-09 65.9 57 71.9
FvH4_6g54460 Fragaria vesca HOM05D000557 ORTHO05D002315 2.5e-07 60.1 56 67.9
FAN09G4469 Fragaria x ananassa HOM05D000557 ORTHO05D002315 2.5e-07 60.1 56 67.9
FAN14G1712 Fragaria x ananassa HOM05D000557 ORTHO05D002315 2.5e-07 60.1 56 67.9
PGR142G0869 Punica granatum HOM05D000557 ORTHO05D002315 2.5e-07 60.1 56 67.9
THA.LOC104815380 Tarenaya hassleriana HOM05D006993 ORTHO05D008336 3.2e-07 59.7 57 57.9
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 5.5e-07 58.9 79 57.0
Gohir.D11G152300 Gossypium hirsutum HOM05D006993 ORTHO05D008336 5.5e-07 58.9 120 33.3
QL02p068153 Quercus lobata HOM05D000557 ORTHO05D002315 7.2e-07 58.5 45 80.0
MD09G1000800 Malus domestica HOM05D000557 ORTHO05D002315 9.4e-07 58.2 56 71.4
GSVIVG01032942001 Vitis vinifera HOM05D000557 ORTHO05D002315 9.4e-07 58.2 56 69.6
Prupe.3G315500 Prunus persica HOM05D000557 ORTHO05D002315 1.6e-06 57.4 45 80.0
Ca_23582_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 2.1e-06 57.0 43 67.4


User provided reference genes

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