Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0217801 Rosa chinensis HOM05D008296 ORTHO05D010448 7.3e-49 196.8 94 100.0
RcHm_v2.0_Chr7g0217831 Rosa chinensis HOM05D008296 ORTHO05D010448 1.3e-40 169.5 92 89.1
RcHm_v2.0_Chr7g0217911 Rosa chinensis HOM05D008296 ORTHO05D010448 8.1e-40 166.8 92 88.0
RcHm_v2.0_Chr7g0217811 Rosa chinensis HOM05D008296 ORTHO05D010448 8.4e-37 156.8 92 83.7
FvH4_5g26860 Fragaria vesca HOM05D008296 ORTHO05D010448 4.2e-36 154.5 95 80.0
FAN13G2903 Fragaria x ananassa HOM05D008296 ORTHO05D010448 4.2e-36 154.5 96 79.2
FAN08G2872 Fragaria x ananassa HOM05D008296 ORTHO05D010448 2.7e-35 151.8 91 82.4
FAN13G0286 Fragaria x ananassa HOM05D008296 ORTHO05D010448 2.7e-35 151.8 91 83.5
FAN04G0708 Fragaria x ananassa HOM05D008296 ORTHO05D010448 1.8e-34 149.1 91 82.4
FAN18G2782 Fragaria x ananassa HOM05D008296 ORTHO05D010448 2.3e-34 148.7 91 81.3
FvH4_5g26890 Fragaria vesca HOM05D008296 ORTHO05D010448 1.1e-33 146.4 92 81.5
FAN18G3797 Fragaria x ananassa HOM05D008296 ORTHO05D010448 1.1e-33 146.4 92 81.5
FAN18G1218 Fragaria x ananassa HOM05D008296 ORTHO05D010448 4.3e-33 144.4 85 80.0
FAN04G1538 Fragaria x ananassa HOM05D008296 ORTHO05D010448 1.6e-32 142.5 92 77.2
FAN08G3104 Fragaria x ananassa HOM05D008296 ORTHO05D010448 3.7e-32 141.4 92 78.3
FAN04G2184 Fragaria x ananassa HOM05D008296 ORTHO05D010448 4.8e-32 141.0 92 79.3
FAN04G3050 Fragaria x ananassa HOM05D008296 ORTHO05D010448 2.4e-31 138.7 93 72.0
QL02p016573 Quercus lobata HOM05D008296 ORTHO05D010448 3.4e-22 108.2 91 69.2
Potri.002G000600 Populus trichocarpa HOM05D008296 ORTHO05D010448 1.1e-20 103.2 89 57.3
PGR031G0250 Punica granatum HOM05D008296 ORTHO05D010448 1.9e-20 102.4 90 64.4
Cfa014178 Carpinus fangiana HOM05D008296 ORTHO05D010448 7.9e-19 97.1 92 57.6
Haze_22903 Corylus avellana HOM05D008296 ORTHO05D010448 1.0e-18 96.7 92 62.0
Eucgr.F01960 Eucalyptus grandis HOM05D008296 ORTHO05D010448 1.8e-18 95.9 90 60.0
CiPaw.07G129200 Carya illinoinensis HOM05D008296 ORTHO05D010448 3.9e-18 94.7 93 58.1
Manes.05G113700 Manihot esculenta HOM05D008296 ORTHO05D010448 5.7e-17 90.9 89 56.2
THA.LOC104809210 Tarenaya hassleriana HOM05D008296 ORTHO05D010448 9.7e-17 90.1 90 52.2
THA.LOC104825210 Tarenaya hassleriana HOM05D008296 ORTHO05D010448 4.8e-16 87.8 84 51.2
Aqoxy5G00917 Aquilegia oxysepala HOM05D008296 ORTHO05D010448 8.2e-16 87.0 90 52.2
BcaB07g31075 Brassica carinata HOM05D008296 ORTHO05D010448 1.4e-15 86.3 90 52.2
MBI01_g32845_MAGBIO Magnolia biondii HOM05D008296 ORTHO05D010448 1.4e-15 86.3 92 51.1
Thecc.08G096500 Theobroma cacao HOM05D008296 ORTHO05D010448 1.4e-15 86.3 90 57.8
AT5G42410 Arabidopsis thaliana HOM05D008296 ORTHO05D010448 1.8e-15 85.9 90 51.1
A08p06440 Brassica napus HOM05D008296 ORTHO05D010448 2.4e-15 85.5 90 51.1
BraA08t32653Z Brassica rapa HOM05D008296 ORTHO05D010448 2.4e-15 85.5 90 51.1
Carub.0001s3444 Capsella rubella HOM05D008296 ORTHO05D010448 3.1e-15 85.1 89 50.6
Carub.0008s0674 Capsella rubella HOM05D008296 ORTHO05D010448 3.1e-15 85.1 90 47.8
BcaC07g37309 Brassica carinata HOM05D008296 ORTHO05D010448 6.9e-15 84.0 90 50.0
A09p19740 Brassica napus HOM05D008296 ORTHO05D010448 6.9e-15 84.0 90 50.0
C08p07430 Brassica napus HOM05D008296 ORTHO05D010448 6.9e-15 84.0 90 50.0
BolC8t47588H Brassica oleracea HOM05D008296 ORTHO05D010448 6.9e-15 84.0 90 50.0
BraA09t37579Z Brassica rapa HOM05D008296 ORTHO05D010448 6.9e-15 84.0 90 50.0
BcaB04g17621 Brassica carinata HOM05D008296 ORTHO05D010448 9.0e-15 83.6 90 48.9
Ciclev10003576m.g Citrus clementina HOM05D008296 ORTHO05D010448 9.0e-15 83.6 90 54.4
AL1G51530 Arabidopsis lyrata HOM05D008296 ORTHO05D010448 1.5e-14 82.8 89 49.4
AT1G43040 Arabidopsis thaliana HOM05D008296 ORTHO05D010448 2.6e-14 82.0 89 49.4
PSO017G6088 Papaver somniferum HOM05D008296 ORTHO05D010448 2.6e-14 82.0 91 51.6
PSO170G5933 Papaver somniferum HOM05D008296 ORTHO05D010448 5.9e-14 80.9 84 53.6
PSO017G7030 Papaver somniferum HOM05D008296 ORTHO05D010448 7.7e-14 80.5 84 53.6
PSO170G5656 Papaver somniferum HOM05D008296 ORTHO05D010448 7.7e-14 80.5 84 53.6
BcaC04g21995 Brassica carinata HOM05D008296 ORTHO05D010448 1.7e-13 79.3 90 48.9
C09p25050 Brassica napus HOM05D008296 ORTHO05D010448 1.7e-13 79.3 90 48.9
BolC9t55399H Brassica oleracea HOM05D008296 ORTHO05D010448 1.7e-13 79.3 90 48.9
PGR083G1197 Punica granatum HOM05D008296 ORTHO05D010448 2.2e-13 79.0 90 51.1
CARHR035280 Cardamine hirsuta HOM05D008296 ORTHO05D010448 3.8e-13 78.2 85 47.1
ATR0605G182 Amborella trichopoda HOM05D008296 ORTHO05D010448 8.5e-13 77.0 90 46.7
CARHR159820 Cardamine hirsuta HOM05D008296 ORTHO05D010448 1.4e-12 76.3 89 46.1
Aa31LG9G12560 Aethionema arabicum HOM05D008296 ORTHO05D010448 1.0e-10 70.1 89 41.6
Eucgr.F03637 Eucalyptus grandis HOM05D008296 ORTHO05D010448 1.4e-10 69.7 56 62.5
DCAR_016931 Daucus carota HOM05D008296 ORTHO05D010448 3.0e-10 68.6 87 43.7
DCAR_009845 Daucus carota HOM05D008296 ORTHO05D010448 1.1e-09 66.6 91 42.9
DCAR_016932 Daucus carota HOM05D008296 ORTHO05D010448 1.7e-08 62.8 87 44.8
Pp3c25_12110 Physcomitrium patens HOM05D000204 ORTHO05D000021 8.2e-08 60.5 72 44.4
SEGI_27164 Sequoiadendron giganteum HOM05D000204 ORTHO05D001668 2.6e-06 55.5 68 47.1
SEGI_29154 Sequoiadendron giganteum HOM05D000204 ORTHO05D001668 2.6e-06 55.5 68 47.1
Psat1g031160 Pisum sativum HOM05D000204 ORTHO05D001668 5.9e-06 54.3 55 50.9
Lsat_1_v5_gn_8_30300 Lactuca sativa HOM05D000204 ORTHO05D001668 7.7e-06 53.9 55 49.1


User provided reference genes

Program Settings