Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0216671 Rosa chinensis HOM05D005559 ORTHO05D006957 2.7e-76 288.5 139 100.0
MD06G1004300 Malus domestica HOM05D005559 ORTHO05D006957 6.2e-36 154.5 199 44.7
RcHm_v2.0_Chr7g0216661 Rosa chinensis HOM05D005559 ORTHO05D006957 1.8e-35 152.9 201 46.8
FvH4_5g26130 Fragaria vesca HOM05D005559 ORTHO05D006957 3.1e-35 152.1 201 46.8
FAN18G3125 Fragaria x ananassa HOM05D005559 ORTHO05D006957 3.1e-35 152.1 201 46.8
Prupe.5G005700 Prunus persica HOM05D005559 ORTHO05D006957 1.2e-34 150.2 199 44.7
FAN13G1149 Fragaria x ananassa HOM05D005559 ORTHO05D006957 9.8e-34 147.1 201 45.3
Cfa014135 Carpinus fangiana HOM05D005559 ORTHO05D006957 7.1e-32 141.0 199 42.7
FAN08G1655 Fragaria x ananassa HOM05D005559 ORTHO05D006957 1.2e-31 140.2 223 41.3
FAN18G2825 Fragaria x ananassa HOM05D005559 ORTHO05D006957 4.6e-31 138.3 201 43.8
CiPaw.07G133700 Carya illinoinensis HOM05D005559 ORTHO05D006957 1.3e-30 136.7 201 43.8
Dinv13752 Davidia involucrata HOM05D005559 ORTHO05D006957 3.0e-30 135.6 199 43.7
Sabra02G0003600 Salix brachista HOM05D005559 ORTHO05D006957 3.0e-30 135.6 200 41.0
GSVIVG01013425001 Vitis vinifera HOM05D005559 ORTHO05D006957 3.9e-30 135.2 201 42.8
QL02p015726 Quercus lobata HOM05D005559 ORTHO05D006957 6.6e-30 134.4 195 42.1
Haze_22861 Corylus avellana HOM05D005559 ORTHO05D006957 1.5e-29 133.3 199 40.7
TAR381G1403 Trochodendron aralioides HOM05D005559 ORTHO05D006957 3.3e-29 132.1 199 42.2
Potri.002G005100 Populus trichocarpa HOM05D005559 ORTHO05D006957 5.6e-29 131.3 199 40.7
CANSAT25G2267 Cannabis sativa HOM05D005559 ORTHO05D006957 1.2e-28 130.2 199 41.2
CsaV3_4G037630 Cucumis sativus L. HOM05D005559 ORTHO05D006957 1.6e-28 129.8 199 39.2
Sabra02G0003500 Salix brachista HOM05D005559 ORTHO05D006957 1.6e-28 129.8 199 39.7
MELO3C017057.2 Cucumis melo HOM05D005559 ORTHO05D006957 6.2e-28 127.9 199 38.7
Sc26g0004750 Simmondsia chinensis HOM05D005559 ORTHO05D006957 6.2e-28 127.9 202 41.6
ClCG11G019030 Citrullus lanatus HOM05D005559 ORTHO05D006957 8.1e-28 127.5 199 38.7
Cpa.g.sc26.16 Carica papaya HOM05D005559 ORTHO05D006957 1.1e-27 127.1 199 40.2
Solyc04g082750.3 Solanum lycopersicum HOM05D005559 ORTHO05D006957 1.4e-27 126.7 199 41.7
Sopen04g036390 Solanum pennellii HOM05D005559 ORTHO05D006957 1.4e-27 126.7 199 41.7
Actinidia17075 Actinidia chinensis HOM05D005559 ORTHO05D006957 1.8e-27 126.3 199 40.7
arahy.Tifrunner.gnm1.ann1.MFDH98 Arachis hypogaea HOM05D005559 ORTHO05D006957 1.8e-27 126.3 201 38.8
Ciclev10001002m.g Citrus clementina HOM05D005559 ORTHO05D006957 2.3e-27 125.9 201 38.8
Hma1.2p1_0699F.1_g205720 Hydrangea macrophylla HOM05D005559 ORTHO05D006957 3.1e-27 125.6 199 39.2
Thhalv10016587m.g Eutrema salsugineum HOM05D005559 ORTHO05D006957 6.8e-27 124.4 201 41.3
Manes.18G002100 Manihot esculenta HOM05D005559 ORTHO05D006957 6.8e-27 124.4 199 38.2
Sp4g15980 Schrenkiella parvula HOM05D005559 ORTHO05D006957 8.9e-27 124.0 201 40.3
MBI01_g28397_MAGBIO Magnolia biondii HOM05D005559 ORTHO05D006957 1.5e-26 123.2 199 40.2
PGSC0003DMG400009923 Solanum tuberosum HOM05D005559 ORTHO05D006957 3.4e-26 122.1 199 40.2
AT2G33630 Arabidopsis thaliana HOM05D005559 ORTHO05D006957 5.8e-26 121.3 201 40.8
Nitab4.5_0001756g0040 Nicotiana tabacum HOM05D005559 ORTHO05D006957 5.8e-26 121.3 199 39.2
THA.LOC104806872 Tarenaya hassleriana HOM05D005559 ORTHO05D006957 5.8e-26 121.3 201 39.3
AL4G29300 Arabidopsis lyrata HOM05D005559 ORTHO05D006957 7.6e-26 120.9 201 39.8
TWI56G0785 Tripterygium wilfordii HOM05D005559 ORTHO05D006957 7.6e-26 120.9 199 37.7
BcaB01g03926 Brassica carinata HOM05D005559 ORTHO05D006957 1.3e-25 120.2 201 39.3
DCAR_023024 Daucus carota HOM05D005559 ORTHO05D006957 1.3e-25 120.2 201 36.8
CSS0028031 Camellia sinensis var. sinensis HOM05D005559 ORTHO05D006957 1.7e-25 119.8 199 39.7
Lj5g0020249 Lotus japonicus HOM05D005559 ORTHO05D006957 2.2e-25 119.4 201 38.3
Aa31LG9G13560 Aethionema arabicum HOM05D005559 ORTHO05D006957 2.9e-25 119.0 201 38.3
C03p21990 Brassica napus HOM05D005559 ORTHO05D006957 2.9e-25 119.0 201 39.3
BolC3t14582H Brassica oleracea HOM05D005559 ORTHO05D006957 2.9e-25 119.0 201 39.3
BraA03t11142Z Brassica rapa HOM05D005559 ORTHO05D006957 3.7e-25 118.6 201 38.8
CAN.G1330.11 Capsicum annuum HOM05D005559 ORTHO05D006957 3.7e-25 118.6 199 39.2
BcaC01g05830 Brassica carinata HOM05D005559 ORTHO05D006957 4.9e-25 118.2 201 38.8
Sed0000545 Sechium edule HOM05D005559 ORTHO05D006957 4.9e-25 118.2 138 48.6
Atru.chr13.62 Acer truncatum HOM05D005559 ORTHO05D006957 6.4e-25 117.9 199 38.2
Lalb_Chr01g0008311 Lupinus albus HOM05D005559 ORTHO05D006957 6.4e-25 117.9 199 37.2
A03p18820 Brassica napus HOM05D005559 ORTHO05D006957 1.4e-24 116.7 201 38.3
CSS0038076 Camellia sinensis var. sinensis HOM05D005559 ORTHO05D006957 1.4e-24 116.7 199 39.7
COL.COLO4_12311 Corchorus olitorius HOM05D005559 ORTHO05D006957 1.4e-24 116.7 199 38.2
Peaxi162Scf00680g00636 Petunia axillaris HOM05D005559 ORTHO05D006957 1.9e-24 116.3 199 38.7
Potri.002G005201 Populus trichocarpa HOM05D005559 ORTHO05D006957 1.9e-24 116.3 139 46.0
CARHR127640 Cardamine hirsuta HOM05D005559 ORTHO05D006957 2.4e-24 115.9 201 40.3
Eucgr.F01812 Eucalyptus grandis HOM05D005559 ORTHO05D006957 2.4e-24 115.9 202 38.1
VMungo0647G1813 Vigna mungo HOM05D005559 ORTHO05D006957 2.4e-24 115.9 201 37.8
Migut.N02985 Erythranthe guttata HOM05D005559 ORTHO05D006957 3.2e-24 115.5 199 39.2
unitig_22.g5730 Utricularia gibba HOM05D005559 ORTHO05D006957 3.2e-24 115.5 199 36.7
Duzib116G0447 Durio zibethinus HOM05D005559 ORTHO05D006957 5.4e-24 114.8 199 36.7
Gohir.A01G102000 Gossypium hirsutum HOM05D005559 ORTHO05D006957 7.1e-24 114.4 201 37.3
Oeu035757.2 Olea europaea HOM05D005559 ORTHO05D006957 7.1e-24 114.4 199 37.2
Carub.0004s1526 Capsella rubella HOM05D005559 ORTHO05D006957 1.2e-23 113.6 201 37.3
Lsat_1_v5_gn_2_3240 Lactuca sativa HOM05D005559 ORTHO05D006957 1.2e-23 113.6 199 36.7
Peaxi162Scf00269g00414 Petunia axillaris HOM05D005559 ORTHO05D006957 1.6e-23 113.2 183 38.8
Phvul.001G000700 Phaseolus vulgaris HOM05D005559 ORTHO05D006957 1.6e-23 113.2 140 45.0
Glyma.14G223900 Glycine max HOM05D005559 ORTHO05D006957 2.1e-23 112.8 190 36.8
Cc10_g00280 Coffea canephora HOM05D005559 ORTHO05D006957 2.7e-23 112.5 199 37.2
Gohir.D01G087100 Gossypium hirsutum HOM05D005559 ORTHO05D006957 2.7e-23 112.5 201 37.3
Gorai.002G112800 Gossypium raimondii HOM05D005559 ORTHO05D006957 2.7e-23 112.5 201 37.3
Aqoxy6G02983 Aquilegia oxysepala HOM05D005559 ORTHO05D006957 3.5e-23 112.1 201 36.8
Glyma.17G262100 Glycine max HOM05D005559 ORTHO05D006957 3.5e-23 112.1 140 44.3
SalBow6G6240 Salvia bowleyana HOM05D005559 ORTHO05D006957 6.0e-23 111.3 199 37.2
MSTRG.24514 Avicennia marina HOM05D005559 ORTHO05D006957 1.7e-22 109.8 201 37.3
CDE05G2847 Ceratophyllum demersum HOM05D005559 ORTHO05D006957 2.3e-22 109.4 152 40.8
Thecc.08G100000 Theobroma cacao HOM05D005559 ORTHO05D006957 3.0e-22 109.0 199 36.2
vmacro21769 Vaccinium macrocarpon HOM05D005559 ORTHO05D006957 3.9e-22 108.6 201 36.3
ECA238G3676 Erigeron canadensis HOM05D005559 ORTHO05D006957 5.1e-22 108.2 194 36.6
SGA_v2.0_scaffold227G43160 Striga asiatica HOM05D005559 ORTHO05D006957 5.1e-22 108.2 201 35.3
EL10Ac1g01873 Beta vulgaris HOM05D005559 ORTHO05D006957 6.6e-22 107.8 201 35.8
Lj4A5T46 Lonicera japonica HOM05D005559 ORTHO05D006957 1.5e-21 106.7 199 35.7
Hund01836 Selenicereus undatus HOM05D005559 ORTHO05D006957 1.9e-21 106.3 201 35.8
PGR031G1403 Punica granatum HOM05D005559 ORTHO05D006957 2.5e-21 105.9 173 38.2
HanXRQChr06g0185311 Helianthus annuus HOM05D005559 ORTHO05D006957 3.3e-21 105.5 195 34.9
Ah.01g024690 Amaranthus hybridus HOM05D005559 ORTHO05D006957 7.3e-21 104.4 201 34.3
PSO541G1621 Papaver somniferum HOM05D005559 ORTHO05D006957 1.2e-20 103.6 196 36.2
TPR.G26383 Trifolium pratense HOM05D005559 ORTHO05D006957 2.8e-20 102.4 140 42.9
Os02g0715200 Oryza sativa ssp. japonica HOM05D005559 ORTHO05D006957 4.7e-20 101.7 132 47.0
PSO675G8223 Papaver somniferum HOM05D005559 ORTHO05D006957 4.7e-20 101.7 196 35.7
Psat0s1355g0040 Pisum sativum HOM05D005559 ORTHO05D006957 6.2e-20 101.3 139 41.7
AUR62035169 Chenopodium quinoa HOM05D005559 ORTHO05D006957 8.1e-20 100.9 201 35.8
ATR0605G082 Amborella trichopoda HOM05D005559 ORTHO05D006957 1.1e-19 100.5 204 37.7
Zm00001eb252680 Zea mays HOM05D005559 ORTHO05D006957 5.2e-19 98.2 137 41.6
FvH4_5g26160 Fragaria vesca HOM05D005559 ORTHO05D006957 8.9e-19 97.4 98 54.1
PSO675G8730 Papaver somniferum HOM05D005559 ORTHO05D006957 1.2e-18 97.1 146 41.8
Medtr1g026540 Medicago truncatula HOM05D005559 ORTHO05D006957 7.6e-18 94.4 140 40.0
Ah.03g148440 Amaranthus hybridus HOM05D005559 ORTHO05D006957 1.3e-17 93.6 201 31.8
PSO541G1320 Papaver somniferum HOM05D005559 ORTHO05D006957 2.9e-17 92.4 146 39.7
Thhalv10018454m.g Eutrema salsugineum HOM05D005559 ORTHO05D006957 3.8e-17 92.0 144 40.3
HPP92_020525 Vanilla planifolia HOM05D005559 ORTHO05D006957 3.8e-17 92.0 202 32.2
Carub.0002s2336 Capsella rubella HOM05D005559 ORTHO05D006957 1.4e-16 90.1 146 39.0
Ah.11g041970 Amaranthus hybridus HOM05D005559 ORTHO05D006957 1.9e-16 89.7 201 33.3
Sp5g31610 Schrenkiella parvula HOM05D005559 ORTHO05D006957 9.3e-16 87.4 146 40.4
SEGI_28534 Sequoiadendron giganteum HOM05D005559 ORTHO05D006957 1.2e-15 87.0 153 33.3
AL2G36580 Arabidopsis lyrata HOM05D005559 ORTHO05D006957 2.7e-15 85.9 140 38.6
Rhsim06G0003400 Rhododendron simsii HOM05D005559 ORTHO05D006957 2.7e-15 85.9 173 35.3
BraA07t31740Z Brassica rapa HOM05D005559 ORTHO05D006957 4.6e-15 85.1 143 38.5
A07p42110 Brassica napus HOM05D005559 ORTHO05D006957 6.0e-15 84.7 143 38.5
C06p50680 Brassica napus HOM05D005559 ORTHO05D006957 3.9e-14 82.0 143 37.1
BcaC08g47151 Brassica carinata HOM05D005559 ORTHO05D006957 1.1e-13 80.5 139 38.1
BcaC08g47244 Brassica carinata HOM05D005559 ORTHO05D006957 1.5e-13 80.1 143 36.4
Aa31LG4G6530 Aethionema arabicum HOM05D005559 ORTHO05D006957 7.3e-13 77.8 144 36.1
BolC6t40094H Brassica oleracea HOM05D005559 ORTHO05D006957 3.6e-12 75.5 130 36.9
Pp3c12_23240 Physcomitrium patens HOM05D005559 ORTHO05D006957 1.5e-10 70.1 133 30.8
SMO147G0007 Selaginella moellendorffii HOM05D005559 ORTHO05D006957 3.4e-10 68.9 132 33.3
AUR62024097 Chenopodium quinoa HOM05D005559 ORTHO05D006957 2.2e-09 66.2 128 35.2
Nn5g31046 Nelumbo nucifera HOM05D005559 ORTHO05D006957 2.9e-09 65.9 94 41.5


User provided reference genes

Program Settings