Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0216471 Rosa chinensis HOM05D005712 ORTHO05D007865 5.5e-198 694.1 351 100.0
FAN18G0352 Fragaria x ananassa HOM05D005712 ORTHO05D007865 4.7e-165 584.7 330 90.0
FAN13G2028 Fragaria x ananassa HOM05D005712 ORTHO05D007865 3.0e-164 582.0 330 89.7
FAN08G0897 Fragaria x ananassa HOM05D005712 ORTHO05D007865 1.1e-163 580.1 330 89.1
FAN04G3045 Fragaria x ananassa HOM05D005712 ORTHO05D007865 6.3e-162 574.3 345 85.5
FvH4_5g25940 Fragaria vesca HOM05D005712 ORTHO05D007865 1.7e-143 513.1 283 91.2
RcHm_v2.0_Chr4g0410601 Rosa chinensis HOM05D005712 ORTHO05D007865 5.6e-134 481.5 257 96.1
MD06G1005200 Malus domestica HOM05D005712 ORTHO05D007865 6.0e-128 461.5 355 68.7
Prupe.5G006400 Prunus persica HOM05D005712 ORTHO05D007865 2.0e-115 419.9 288 74.7
QL02p015343 Quercus lobata HOM05D005712 ORTHO05D007865 3.1e-108 396.0 356 60.1
Cfa014126 Carpinus fangiana HOM05D005712 ORTHO05D007865 1.3e-106 390.6 362 60.5
Manes.05G126100 Manihot esculenta HOM05D005712 ORTHO05D007865 1.3e-106 390.6 353 60.6
Ciclev10001686m.g Citrus clementina HOM05D005712 ORTHO05D007865 1.5e-102 377.1 358 57.5
Potri.005G255300 Populus trichocarpa HOM05D005712 ORTHO05D007865 9.6e-102 374.4 379 55.9
Potri.002G006300 Populus trichocarpa HOM05D005712 ORTHO05D007865 2.1e-101 373.2 381 56.4
Haze_22847 Corylus avellana HOM05D005712 ORTHO05D007865 3.6e-101 372.5 405 54.1
Thecc.08G064200 Theobroma cacao HOM05D005712 ORTHO05D007865 4.8e-101 372.1 367 58.6
CiPaw.07G134700 Carya illinoinensis HOM05D005712 ORTHO05D007865 8.1e-101 371.3 361 58.2
COL.COLO4_07687 Corchorus olitorius HOM05D005712 ORTHO05D007865 5.3e-100 368.6 372 56.7
Dinv31977 Davidia involucrata HOM05D005712 ORTHO05D007865 2.6e-99 366.3 362 57.2
Duzib116G0237 Durio zibethinus HOM05D005712 ORTHO05D007865 3.8e-98 362.5 361 58.2
Cpa.g.sc26.149 Carica papaya HOM05D005712 ORTHO05D007865 8.4e-98 361.3 359 56.8
TWI12G0719 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 1.4e-97 360.5 355 56.9
Sabra05G0197900 Salix brachista HOM05D005712 ORTHO05D007865 3.2e-97 359.4 380 54.7
TWI56G0384 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 7.1e-97 358.2 360 56.9
TAR381G1666 Trochodendron aralioides HOM05D005712 ORTHO05D007865 1.6e-96 357.1 344 57.0
Actinidia17068 Actinidia chinensis HOM05D005712 ORTHO05D007865 7.8e-96 354.8 356 55.1
CSS0017080 Camellia sinensis var. sinensis HOM05D005712 ORTHO05D007865 7.8e-96 354.8 361 55.1
Nn5g31025 Nelumbo nucifera HOM05D005712 ORTHO05D007865 1.0e-95 354.4 354 53.7
Actinidia15518 Actinidia chinensis HOM05D005712 ORTHO05D007865 2.3e-95 353.2 356 54.5
GSVIVG01013413001 Vitis vinifera HOM05D005712 ORTHO05D007865 1.1e-94 350.9 359 56.5
Atru.chr13.78 Acer truncatum HOM05D005712 ORTHO05D007865 2.5e-94 349.7 266 67.7
Gohir.D05G181100 Gossypium hirsutum HOM05D005712 ORTHO05D007865 4.3e-94 349.0 366 56.6
Gohir.A05G177700 Gossypium hirsutum HOM05D005712 ORTHO05D007865 5.6e-94 348.6 325 59.7
TAR625G0170 Trochodendron aralioides HOM05D005712 ORTHO05D007865 3.6e-93 345.9 340 56.5
Gorai.009G186100 Gossypium raimondii HOM05D005712 ORTHO05D007865 4.0e-92 342.4 359 55.7
CANSAT35G0891 Cannabis sativa HOM05D005712 ORTHO05D007865 1.3e-90 337.4 364 56.6
CsaV3_4G037540 Cucumis sativus L. HOM05D005712 ORTHO05D007865 1.7e-90 337.0 366 53.8
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 2.2e-90 336.7 358 53.9
Sed0012463 Sechium edule HOM05D005712 ORTHO05D007865 1.1e-89 334.3 367 54.2
Aqoxy6G01560 Aquilegia oxysepala HOM05D005712 ORTHO05D007865 1.4e-89 334.0 339 52.8
MELO3C017048.2 Cucumis melo HOM05D005712 ORTHO05D007865 5.4e-89 332.0 366 53.0
Eucgr.F03584 Eucalyptus grandis HOM05D005712 ORTHO05D007865 1.1e-86 324.3 333 54.1
vmacro21777 Vaccinium macrocarpon HOM05D005712 ORTHO05D007865 3.3e-86 322.8 358 50.8
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 1.3e-85 320.9 293 57.0
Nitab4.5_0004637g0020 Nicotiana tabacum HOM05D005712 ORTHO05D007865 4.8e-85 318.9 356 52.0
Hund05083 Selenicereus undatus HOM05D005712 ORTHO05D007865 4.8e-85 318.9 338 52.4
ClCG11G018940 Citrullus lanatus HOM05D005712 ORTHO05D007865 1.4e-84 317.4 396 48.7
CARHR021260 Cardamine hirsuta HOM05D005712 ORTHO05D007865 3.1e-84 316.2 351 52.7
Ah.00g001120 Amaranthus hybridus HOM05D005712 ORTHO05D007865 4.0e-84 315.8 347 49.9
Nitab4.5_0000486g0150 Nicotiana tabacum HOM05D005712 ORTHO05D007865 9.0e-84 314.7 356 51.1
EL10Ac1g01884 Beta vulgaris HOM05D005712 ORTHO05D007865 2.6e-83 313.2 370 48.4
Hma1.2p1_0699F.1_g205630 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 4.5e-83 312.4 264 62.1
Carub.0001s2029 Capsella rubella HOM05D005712 ORTHO05D007865 1.7e-82 310.5 348 51.1
Lsat_1_v5_gn_2_2221 Lactuca sativa HOM05D005712 ORTHO05D007865 2.2e-82 310.1 326 53.4
AUR62024105 Chenopodium quinoa HOM05D005712 ORTHO05D007865 8.4e-82 308.1 298 52.7
MBI05_g08201_MAGBIO Magnolia biondii HOM05D005712 ORTHO05D007865 1.4e-81 307.4 278 55.0
Lj4C5T14 Lonicera japonica HOM05D005712 ORTHO05D007865 4.2e-81 305.8 304 54.6
Sopen08g012540 Solanum pennellii HOM05D005712 ORTHO05D007865 4.2e-81 305.8 275 60.4
Solyc08g042080.3 Solanum lycopersicum HOM05D005712 ORTHO05D007865 5.5e-81 305.4 275 60.0
PGSC0003DMG400000968 Solanum tuberosum HOM05D005712 ORTHO05D007865 5.5e-81 305.4 302 55.6
AT1G20830 Arabidopsis thaliana HOM05D005712 ORTHO05D007865 1.6e-80 303.9 349 49.9
MSTRG.22087 Avicennia marina HOM05D005712 ORTHO05D007865 4.6e-80 302.4 343 53.6
CAN.G36.16 Capsicum annuum HOM05D005712 ORTHO05D007865 4.6e-80 302.4 297 55.9
ECA238G0561 Erigeron canadensis HOM05D005712 ORTHO05D007865 7.9e-80 301.6 288 54.9
PSO541G4707 Papaver somniferum HOM05D005712 ORTHO05D007865 1.0e-79 301.2 343 51.0
Aa31LG7G4990 Aethionema arabicum HOM05D005712 ORTHO05D007865 3.9e-79 299.3 360 49.7
Thhalv10007995m.g Eutrema salsugineum HOM05D005712 ORTHO05D007865 5.1e-79 298.9 384 47.7
Glyma.06G015100 Glycine max HOM05D005712 ORTHO05D007865 5.1e-79 298.9 242 61.6
THA.LOC104813742 Tarenaya hassleriana HOM05D005712 ORTHO05D007865 5.1e-79 298.9 347 47.3
Peaxi162Scf00632g00416 Petunia axillaris HOM05D005712 ORTHO05D007865 6.7e-79 298.5 274 59.1
PSO675G3648 Papaver somniferum HOM05D005712 ORTHO05D007865 1.9e-78 297.0 343 50.4
BcaC05g25986 Brassica carinata HOM05D005712 ORTHO05D007865 9.6e-78 294.7 371 47.2
C05p19380 Brassica napus HOM05D005712 ORTHO05D007865 9.6e-78 294.7 371 47.2
Lj1g0001697 Lotus japonicus HOM05D005712 ORTHO05D007865 1.3e-77 294.3 266 57.9
Lalb_Chr23g0265571 Lupinus albus HOM05D005712 ORTHO05D007865 1.6e-77 293.9 267 57.7
A06p16820 Brassica napus HOM05D005712 ORTHO05D007865 2.8e-77 293.1 350 48.0
BcaB03g12849 Brassica carinata HOM05D005712 ORTHO05D007865 3.7e-77 292.7 350 47.7
DCAR_022990 Daucus carota HOM05D000190 ORTHO05D007865 3.7e-77 292.7 352 46.9
Sp1g18530 Schrenkiella parvula HOM05D005712 ORTHO05D007865 4.8e-77 292.4 386 46.9
VMungo1309G2122 Vigna mungo HOM05D005712 ORTHO05D007865 4.8e-77 292.4 315 53.3
Migut.N02981 Erythranthe guttata HOM05D005712 ORTHO05D007865 6.2e-77 292.0 263 60.1
BraA06t24791Z Brassica rapa HOM05D005712 ORTHO05D007865 8.2e-77 291.6 350 48.3
Phvul.009G007500 Phaseolus vulgaris HOM05D005712 ORTHO05D007865 8.2e-77 291.6 238 60.1
Oeu004544.1 Olea europaea HOM05D005712 ORTHO05D007865 1.8e-76 290.4 240 63.3
BcaB07g32078 Brassica carinata HOM05D005712 ORTHO05D007865 2.4e-76 290.0 363 46.6
BolC5t30641H Brassica oleracea HOM05D005712 ORTHO05D007865 2.4e-76 290.0 372 47.0
Cc10_g00320 Coffea canephora HOM05D005712 ORTHO05D007865 2.4e-76 290.0 276 56.9
HanXRQChr06g0185301 Helianthus annuus HOM05D005712 ORTHO05D007865 5.3e-76 288.9 315 52.7
Hma1.2p1_0699F.1_g205640 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 6.9e-76 288.5 181 74.6
CDE04G2669 Ceratophyllum demersum HOM05D005712 ORTHO05D007865 1.5e-75 287.3 283 55.5
arahy.Tifrunner.gnm1.ann1.CTTM8W Arachis hypogaea HOM05D005712 ORTHO05D007865 4.5e-75 285.8 361 47.6
SGA_v2.0_scaffold54G19632 Striga asiatica HOM05D005712 ORTHO05D007865 2.9e-74 283.1 282 53.9
Medtr3g116050 Medicago truncatula HOM05D005712 ORTHO05D007865 3.8e-74 282.7 353 47.6
Ca_15390_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 1.4e-73 280.8 258 55.0
Glyma.04G015100 Glycine max HOM05D005712 ORTHO05D007865 4.2e-73 279.3 242 57.9
arahy.Tifrunner.gnm1.ann1.16JRKN Arachis hypogaea HOM05D005712 ORTHO05D007865 7.1e-73 278.5 292 52.7
ATR0807G100 Amborella trichopoda HOM05D005712 ORTHO05D007865 9.3e-73 278.1 298 50.7
AL1G33850 Arabidopsis lyrata HOM05D005712 ORTHO05D007865 6.1e-72 275.4 229 62.0
SalBow6G6969 Salvia bowleyana HOM05D005712 ORTHO05D007865 5.1e-71 272.3 354 46.3
Ca_29628_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 1.1e-70 271.2 213 62.0
AUR62035160 Chenopodium quinoa HOM05D005712 ORTHO05D007865 2.5e-70 270.0 216 62.0
Psat5g008680 Pisum sativum HOM05D005712 ORTHO05D007865 3.7e-69 266.2 181 69.6
TPR.G38133 Trifolium pratense HOM05D005712 ORTHO05D007865 3.7e-69 266.2 260 53.8
HPP92_022548 Vanilla planifolia HOM05D005712 ORTHO05D007865 4.1e-68 262.7 229 59.4
Zm00001eb072780 Zea mays HOM05D005712 ORTHO05D007865 2.7e-64 250.0 261 49.0
Os04g0584900 Oryza sativa ssp. japonica HOM05D005712 ORTHO05D007865 6.1e-64 248.8 307 45.6
unitig_22.g5745 Utricularia gibba HOM05D005712 ORTHO05D007865 3.0e-63 246.5 234 58.1
SEGI_27803 Sequoiadendron giganteum HOM05D005712 ORTHO05D007865 8.8e-63 245.0 240 49.6
Zm00001eb428100 Zea mays HOM05D005712 ORTHO05D007865 4.3e-62 242.7 257 47.5
Cpa.g.sc26.148 Carica papaya HOM05D005712 ORTHO05D007865 2.2e-61 240.4 152 77.0
SMO276G0054 Selaginella moellendorffii HOM05D005712 ORTHO05D007865 5.3e-52 209.1 200 51.5
AagrBONN_evm.TU.Sc2ySwM_117.1031 Anthoceros agrestis HOM05D005712 ORTHO05D007865 1.2e-51 208.0 179 57.0
Oeu019899.1 Olea europaea HOM05D005712 ORTHO05D007865 7.7e-51 205.3 121 77.7
Mapoly0022s0159 Marchantia polymorpha HOM05D005712 ORTHO05D007865 1.7e-50 204.1 253 45.1
Pp3c9_6030 Physcomitrium patens HOM05D005712 ORTHO05D007865 2.6e-46 190.3 233 44.6
Pp3c15_5620 Physcomitrium patens HOM05D005712 ORTHO05D007865 2.2e-45 187.2 251 43.0
Duzib093G1432 Durio zibethinus HOM05D005712 ORTHO05D007865 9.1e-44 181.8 98 83.7
Cpa.g.c30366.3 Carica papaya HOM05D005712 ORTHO05D007865 4.0e-31 139.8 79 77.2
Cpa.g.c44851 Carica papaya HOM05D005712 ORTHO05D007865 1.3e-29 134.8 69 87.0
Oeu019902.1 Olea europaea HOM05D005712 ORTHO05D007865 3.5e-19 100.1 64 73.4
A07p15460 Brassica napus HOM05D005712 ORTHO05D007865 3.4e-14 83.6 61 60.7
Cpa.g.c30633.1 Carica papaya HOM05D005712 ORTHO05D120172 1.2e-08 65.1 57 61.4


User provided reference genes

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