Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 6.4e-96 354.0 168 100.0
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.6e-91 339.3 168 95.8
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 3.6e-91 338.2 168 95.2
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.6e-91 338.2 168 95.2
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.6e-91 338.2 168 95.2
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 1.9e-76 289.3 168 78.6
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 2.4e-74 282.3 168 75.0
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 3.4e-73 278.5 163 76.7
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 2.2e-72 275.8 168 73.8
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 5.5e-71 271.2 168 70.8
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 2.1e-70 269.2 168 70.8
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 2.7e-70 268.9 167 70.1
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 2.7e-70 268.9 167 70.1
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 4.6e-70 268.1 169 72.2
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 1.3e-69 266.5 170 70.0
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 8.7e-69 263.8 168 66.7
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 3.3e-68 261.9 168 67.9
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 5.7e-68 261.2 167 67.1
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 7.4e-68 260.8 168 69.0
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 1.6e-67 259.6 168 66.7
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 2.8e-67 258.8 168 67.3
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 6.3e-67 257.7 168 69.0
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 6.3e-67 257.7 168 66.7
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 1.1e-66 256.9 168 66.1
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 5.3e-66 254.6 168 67.9
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 1.2e-65 253.4 168 66.1
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 1.2e-65 253.4 168 67.9
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 1.5e-65 253.1 168 67.3
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 2.0e-65 252.7 168 65.5
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 2.0e-65 252.7 168 67.9
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 2.6e-65 252.3 168 64.3
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 3.4e-65 251.9 168 66.7
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 3.4e-65 251.9 168 66.1
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 5.9e-65 251.1 170 63.5
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 1.3e-64 250.0 168 64.9
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 1.3e-64 250.0 168 68.5
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.3e-64 250.0 125 92.8
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 2.9e-64 248.8 172 64.5
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 3.8e-64 248.4 168 66.1
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 5.0e-64 248.1 168 65.5
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 5.0e-64 248.1 170 62.9
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 8.4e-64 247.3 168 65.5
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.1e-63 246.9 170 64.7
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 2.5e-63 245.7 168 64.3
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 2.5e-63 245.7 168 64.9
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 3.2e-63 245.4 170 64.1
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 4.2e-63 245.0 168 64.9
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 5.5e-63 244.6 170 65.3
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 5.5e-63 244.6 168 66.7
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 7.2e-63 244.2 170 64.1
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 2.7e-62 242.3 168 62.5
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.8e-61 239.6 168 63.1
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 2.3e-61 239.2 179 60.3
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 3.9e-61 238.4 168 61.9
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 6.7e-61 237.7 168 63.1
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 8.7e-61 237.3 168 60.1
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 1.5e-60 236.5 168 61.9
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 61.9
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 61.9
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 61.9
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 61.9
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 4.3e-60 235.0 168 58.9
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 4.3e-60 235.0 168 61.3
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 9.7e-60 233.8 168 60.1
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 1.3e-59 233.4 168 60.7
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.6e-59 233.0 168 60.1
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 1.6e-59 233.0 168 64.3
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 2.2e-59 232.6 168 59.5
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 2.8e-59 232.3 168 60.7
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 4.8e-59 231.5 168 60.1
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 6.3e-59 231.1 168 60.7
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 1.1e-58 230.3 168 61.3
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 1.1e-58 230.3 168 61.3
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 1.1e-58 230.3 168 60.1
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.1e-58 230.3 168 60.7
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 1.4e-58 229.9 168 60.7
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 2.4e-58 229.2 168 60.7
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 3.1e-58 228.8 184 59.2
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 4.1e-58 228.4 168 60.7
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 4.1e-58 228.4 168 60.1
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 4.1e-58 228.4 153 69.3
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 4.1e-58 228.4 169 61.5
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 5.3e-58 228.0 173 60.1
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 5.3e-58 228.0 169 61.5
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 1.5e-57 226.5 168 60.7
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 1.5e-57 226.5 168 60.7
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 1.5e-57 226.5 168 60.7
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 1.5e-57 226.5 205 51.2
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 2.6e-57 225.7 169 60.9
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 3.4e-57 225.3 169 60.9
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.0e-56 223.8 169 60.9
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.0e-56 223.8 169 60.9
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 3.8e-56 221.9 188 56.4
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 8.5e-56 220.7 168 57.7
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 1.1e-55 220.3 182 55.5
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.1e-55 220.3 201 51.7
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 1.4e-55 219.9 205 53.2
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 2.5e-55 219.2 189 54.5
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 3.2e-55 218.8 196 52.0
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 5.5e-55 218.0 193 56.5
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 5.5e-55 218.0 137 69.3
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 1.2e-54 216.9 155 61.3
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 1.6e-54 216.5 168 54.8
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 1.6e-54 216.5 168 57.1
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 2.1e-54 216.1 168 57.1
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 1.4e-53 213.4 141 66.7
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 1.4e-53 213.4 168 56.5
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 2.3e-53 212.6 172 56.4
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 6.7e-53 211.1 168 57.1
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 1.5e-52 209.9 168 56.0
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 9.7e-52 207.2 188 52.1
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 3.7e-51 205.3 190 52.6
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 8.2e-51 204.1 237 43.5
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 2.0e-49 199.5 140 63.6
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 7.7e-49 197.6 168 58.3
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 1.3e-48 196.8 169 54.4
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 3.2e-47 192.2 167 55.1
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 3.2e-47 192.2 190 50.5
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 7.4e-44 181.0 151 55.6
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 3.5e-41 172.2 145 53.1
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 5.0e-40 168.3 169 45.6
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 5.0e-40 168.3 169 46.7
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 1.5e-39 166.8 168 50.6
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 1.2e-38 163.7 104 67.3
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 1.6e-38 163.3 173 47.4
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 1.6e-38 163.3 186 46.8
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 8.8e-37 157.5 109 58.7
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 1.1e-36 157.1 174 46.0
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 1.3e-35 153.7 136 51.5
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 3.1e-34 149.1 168 46.4
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 1.0e-29 134.0 97 62.9
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 6.8e-29 131.3 169 39.6
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 1.2e-28 130.6 171 41.5
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 2.8e-27 125.9 88 60.2
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 1.8e-26 123.2 162 41.4
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 4.5e-25 118.6 142 40.8
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 2.2e-24 116.3 169 34.9
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 1.5e-23 113.6 184 34.2
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 4.2e-23 112.1 107 47.7
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 5.5e-23 111.7 163 36.2
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 7.2e-23 111.3 171 34.5
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 1.6e-22 110.2 112 52.7
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 2.0e-20 103.2 97 46.4
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 5.6e-15 85.1 60 58.3
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 1.2e-14 84.0 67 53.7
Sc15g0004100 Simmondsia chinensis HOM05D001775 ORTHO05D006205 8.6e-08 61.2 141 31.2


User provided reference genes

Program Settings