Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 0.0e+00 1496.9 737 100.0
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 0.0e+00 1224.2 916 70.0
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 0.0e+00 1221.5 916 69.9
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 0.0e+00 1221.1 916 70.1
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 0.0e+00 1208.0 916 70.0
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 1.3e-294 1016.1 924 58.4
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 1.3e-294 1016.1 925 60.0
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 1.2e-223 780.4 933 48.9
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 7.6e-218 761.1 919 48.1
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.3e-217 760.4 925 49.3
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 1.1e-216 757.3 911 46.2
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.8e-214 750.0 920 47.5
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 1.1e-213 747.3 916 46.8
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 5.1e-206 721.8 916 44.9
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 3.7e-204 715.7 912 44.8
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 4.7e-199 698.7 916 43.1
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 3.0e-198 696.0 915 42.7
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 2.0e-197 693.3 904 44.7
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 2.6e-197 693.0 900 44.9
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.8e-195 686.8 904 44.5
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.4e-190 670.6 920 45.1
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 7.4e-189 664.8 912 43.9
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 9.1e-187 657.9 555 58.9
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 1.9e-184 650.2 915 41.6
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 3.1e-179 632.9 914 42.6
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 8.5e-177 624.8 834 44.6
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 3.2e-176 622.9 919 42.0
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 3.2e-176 622.9 913 42.1
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 1.6e-175 620.5 906 42.3
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 1.6e-175 620.5 886 43.2
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 2.1e-175 620.2 913 40.6
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 4.7e-175 619.0 914 41.6
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 5.2e-174 615.5 912 40.5
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 7.7e-170 601.7 916 41.7
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 1.9e-168 597.0 892 41.1
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 2.5e-168 596.7 902 41.0
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 1.6e-167 594.0 894 41.4
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 8.0e-167 591.7 901 40.7
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 2.0e-162 577.0 896 40.0
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 3.6e-159 566.2 540 53.7
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 4.0e-158 562.8 923 40.0
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 2.2e-156 557.0 935 38.5
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 2.4e-155 553.5 904 39.5
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 4.1e-155 552.7 908 39.6
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 4.7e-151 539.3 539 52.7
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 8.0e-151 538.5 813 40.2
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 1.8e-150 537.3 616 48.9
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 2.9e-148 530.0 901 39.3
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 1.9e-147 527.3 540 51.1
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.9e-144 517.3 908 38.7
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 2.1e-143 513.8 909 37.4
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 3.2e-139 500.0 735 43.0
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 1.1e-136 491.5 519 53.0
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 2.8e-135 486.9 899 37.4
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 2.7e-130 470.3 906 34.4
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 2.3e-129 467.2 876 35.6
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 1.5e-128 464.5 930 34.1
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 1.9e-128 464.2 956 34.2
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 1.3e-127 461.5 559 46.0
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 3.6e-127 459.9 565 43.7
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 4.0e-126 456.4 739 41.0
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 9.0e-126 455.3 900 35.4
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 3.4e-125 453.4 725 41.9
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 1.6e-122 444.5 907 33.6
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 6.0e-122 442.6 563 43.5
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 6.0e-122 442.6 419 54.7
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 2.8e-119 433.7 909 32.7
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 8.1e-119 432.2 917 35.1
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 4.0e-118 429.9 878 34.4
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 4.5e-117 426.4 907 34.6
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 5.8e-117 426.0 586 41.8
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.2e-114 418.3 909 33.8
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 8.7e-113 412.1 907 32.2
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 8.1e-111 405.6 916 33.2
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 2.4e-110 404.1 875 33.0
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 1.2e-109 401.7 943 33.0
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 1.5e-109 401.4 564 41.5
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 3.4e-109 400.2 563 40.9
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 7.6e-109 399.1 565 40.9
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 7.6e-109 399.1 562 40.4
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 2.9e-108 397.1 933 30.7
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 4.9e-108 396.4 866 33.3
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 1.4e-107 394.8 882 33.8
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 4.2e-107 393.3 904 33.0
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 3.9e-105 386.7 895 32.7
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.9e-104 384.4 564 40.6
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 8.2e-103 379.0 914 31.8
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.4e-102 378.3 904 31.7
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.4e-102 377.5 561 40.1
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 2.4e-102 377.5 924 31.2
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 4.1e-102 376.7 940 31.5
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 2.0e-101 374.4 938 31.3
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 9.3e-99 365.5 772 34.8
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.0e-97 362.1 918 31.8
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 1.5e-93 348.2 960 31.6
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 2.2e-92 344.4 553 37.8
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 9.7e-88 328.9 900 30.2
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 1.3e-79 302.0 522 36.2
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 9.1e-78 295.8 573 35.4
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 2.2e-76 291.2 560 34.3
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 2.6e-72 277.7 370 43.2
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 5.0e-68 263.5 355 41.4
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.5e-67 261.9 583 32.6
RcHm_v2.0_Chr6g0264731 Rosa chinensis HOM05D004345 ORTHO05D005192 3.6e-66 257.3 139 90.6
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 1.2e-64 252.3 579 31.6
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 7.7e-61 239.6 456 35.7
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 4.0e-57 227.3 556 31.5
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 1.1e-54 219.2 577 29.6
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 2.4e-54 218.0 321 42.4
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 5.4e-54 216.9 567 31.6
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 1.6e-53 215.3 297 41.4
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 3.8e-52 210.7 567 29.8
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 1.9e-51 208.4 329 38.0
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 3.3e-51 207.6 746 27.9
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 4.1e-46 190.7 333 35.1
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 9.2e-46 189.5 526 28.5
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.2e-45 189.1 402 33.8
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.0e-44 186.0 550 29.1
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 8.0e-42 176.4 362 33.7
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 3.1e-41 174.5 254 40.2
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 6.4e-39 166.8 120 64.2
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 1.9e-35 155.2 180 45.0
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 5.2e-33 147.1 109 59.6
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.2e-29 136.0 380 29.5
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.7e-29 134.8 386 29.8
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 3.4e-24 117.9 580 25.5
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 2.2e-23 115.2 129 38.8
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 2.2e-23 115.2 129 38.8
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 7.1e-22 110.2 216 33.3
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 1.6e-21 109.0 84 60.7
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 6.2e-18 97.1 118 45.8
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 1.1e-17 96.3 142 35.2
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.4e-17 95.9 118 44.9
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.1e-14 86.3 79 51.9
Oeu028553.1 Olea europaea HOM05D004345 ORTHO05D005192 2.1e-13 82.0 148 36.5
ATR0194G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.7e-13 81.6 304 25.3
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 6.0e-13 80.5 411 23.6
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 6.0e-13 80.5 179 35.2
Oeu011014.1 Olea europaea HOM05D004345 ORTHO05D005192 1.3e-12 79.3 150 36.7
ATR0560G003 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.3e-12 78.6 185 32.4
Medtr1g071240 Medicago truncatula HOM05D000001 ORTHO05D000003 6.6e-12 77.0 175 34.3
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 6.6e-12 77.0 120 40.0
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 6.2e-10 70.5 384 22.9
Sc14g0004510 Simmondsia chinensis HOM05D004345 ORTHO05D005192 5.3e-09 67.4 123 32.5
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 4.4e-08 64.3 37 81.1
Sed0011179 Sechium edule HOM05D004345 ORTHO05D005192 2.2e-07 62.0 50 58.0
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 4.9e-07 60.8 41 63.4
PGSC0003DMG403028564 Solanum tuberosum HOM05D004345 ORTHO05D005192 8.4e-07 60.1 143 32.9
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 5.4e-06 57.4 150 32.7


User provided reference genes

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