Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 2.0e-119 433.0 308 100.0
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 2.9e-102 375.9 327 81.0
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 5.3e-96 355.1 309 77.7
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.1e-93 347.4 196 91.3
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 5.5e-93 345.1 196 90.8
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.1e-92 343.2 196 90.8
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 4.3e-90 335.5 195 89.2
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 5.0e-70 268.9 194 71.6
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 5.1e-67 258.8 194 70.1
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 1.6e-60 237.3 194 66.0
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.0e-47 193.7 109 87.2
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 2.7e-44 183.3 188 58.5
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 1.0e-43 181.4 198 55.6
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 4.0e-43 179.5 205 54.6
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 5.2e-43 179.1 204 53.4
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 8.8e-43 178.3 187 56.1
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 2.0e-42 177.2 201 55.7
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 5.7e-42 175.6 203 52.7
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 7.5e-42 175.3 203 54.7
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 7.5e-42 175.3 189 54.0
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 2.8e-41 173.3 217 52.1
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 9.1e-40 168.3 199 53.3
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 1.2e-39 167.9 204 51.5
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 1.2e-39 167.9 193 53.9
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 4.5e-39 166.0 189 56.1
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 5.9e-39 165.6 188 54.8
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 1.0e-38 164.9 186 54.8
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 1.7e-38 164.1 198 51.5
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 3.8e-38 162.9 193 51.8
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 3.8e-38 162.9 197 50.3
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 5.0e-38 162.5 204 50.0
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 6.6e-38 162.2 205 48.8
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 8.6e-38 161.8 191 50.3
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 8.6e-38 161.8 193 50.8
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 1.1e-37 161.4 194 51.5
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 1.5e-37 161.0 191 52.4
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 1.5e-37 161.0 231 48.9
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 1.9e-37 160.6 192 51.0
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 1.9e-37 160.6 198 52.0
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 3.3e-37 159.8 201 50.7
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 4.2e-37 159.5 191 52.4
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 5.5e-37 159.1 192 50.0
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 5.5e-37 159.1 197 51.8
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 5.5e-37 159.1 195 50.8
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 7.2e-37 158.7 193 51.8
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 9.5e-37 158.3 197 50.8
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 9.5e-37 158.3 191 49.7
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 1.2e-36 157.9 194 51.5
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 1.2e-36 157.9 190 52.6
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 1.2e-36 157.9 176 51.7
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 2.1e-36 157.1 202 49.5
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 2.8e-36 156.8 176 51.1
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 2.8e-36 156.8 176 51.1
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 2.8e-36 156.8 193 50.8
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 3.6e-36 156.4 190 54.2
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 3.6e-36 156.4 196 50.5
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 6.1e-36 155.6 192 50.0
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 6.1e-36 155.6 193 50.8
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 8.0e-36 155.2 202 48.5
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 8.0e-36 155.2 186 51.1
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 8.0e-36 155.2 192 48.4
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 8.0e-36 155.2 188 50.5
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 4.0e-35 152.9 196 49.5
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 5.2e-35 152.5 182 50.5
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 5.2e-35 152.5 200 48.5
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 6.8e-35 152.1 206 47.1
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 6.8e-35 152.1 193 50.3
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 6.8e-35 152.1 169 52.1
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 8.9e-35 151.8 192 50.0
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 8.9e-35 151.8 192 50.0
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 8.9e-35 151.8 207 45.9
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 1.5e-34 151.0 196 45.9
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 2.0e-34 150.6 204 49.0
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 3.4e-34 149.8 185 47.0
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 3.4e-34 149.8 205 48.8
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 3.4e-34 149.8 208 46.6
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 4.4e-34 149.4 192 50.0
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 4.4e-34 149.4 198 47.5
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 7.5e-34 148.7 192 50.0
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 9.8e-34 148.3 202 46.0
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 1.3e-33 147.9 208 47.1
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 2.8e-33 146.7 191 48.2
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 4.9e-33 146.0 185 48.6
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 4.9e-33 146.0 185 49.7
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 4.9e-33 146.0 204 46.6
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 6.3e-33 145.6 173 53.2
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 6.3e-33 145.6 189 46.6
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 6.3e-33 145.6 192 50.0
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 8.3e-33 145.2 173 49.1
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 8.3e-33 145.2 208 44.2
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.4e-32 144.4 190 46.3
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 1.4e-32 144.4 173 49.1
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 1.4e-32 144.4 195 45.1
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.8e-32 144.1 198 46.0
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 2.4e-32 143.7 184 47.8
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 5.4e-32 142.5 240 42.9
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 5.4e-32 142.5 175 47.4
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 3.5e-31 139.8 173 48.0
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 4.5e-31 139.4 197 45.2
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 4.5e-31 139.4 219 41.6
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 5.9e-31 139.0 174 47.7
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 2.9e-30 136.7 190 46.8
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 8.6e-30 135.2 163 52.8
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 7.3e-29 132.1 180 45.0
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 1.2e-28 131.3 172 48.3
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 2.1e-28 130.6 197 43.7
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 6.1e-28 129.0 178 48.9
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 8.0e-28 128.6 175 48.6
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 7.5e-26 122.1 240 39.6
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 3.5e-23 113.2 190 40.0
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 2.0e-18 97.4 103 50.5
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 2.6e-18 97.1 182 40.1
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 2.6e-18 97.1 147 40.8
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 1.2e-15 88.2 108 50.0
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 6.0e-15 85.9 286 31.1
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 3.0e-14 83.6 88 53.4
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 5.1e-14 82.8 98 48.0
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 9.5e-13 78.6 81 54.3
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 6.8e-11 72.4 201 32.3
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 1.4e-08 64.7 207 29.0
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 3.2e-08 63.5 89 40.4
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 2.1e-07 60.8 63 52.4
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 8.6e-06 55.5 38 65.8


User provided reference genes

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