Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0214141 Rosa chinensis HOM05D003411 ORTHO05D003914 2.0e-42 175.3 82 100.0
FAN07G1736 Fragaria x ananassa HOM05D003411 ORTHO05D003914 2.4e-24 115.2 55 94.5
FvH4_4g13170 Fragaria vesca HOM05D003411 ORTHO05D003914 7.1e-24 113.6 55 92.7
FAN12G0475 Fragaria x ananassa HOM05D003411 ORTHO05D003914 7.1e-24 113.6 55 92.7
RcHm_v2.0_Chr4g0413261 Rosa chinensis HOM05D003411 ORTHO05D003914 1.2e-23 112.8 55 92.7
MD04G1018500 Malus domestica HOM05D003411 ORTHO05D003914 1.6e-23 112.5 55 92.7
Prupe.1G167300 Prunus persica HOM05D003411 ORTHO05D003914 1.6e-23 112.5 55 92.7
Hma1.2p1_0349F.1_g131970 Hydrangea macrophylla HOM05D003411 ORTHO05D003914 3.5e-23 111.3 55 89.1
SalBow3G1551 Salvia bowleyana HOM05D003411 ORTHO05D003914 3.5e-23 111.3 55 90.9
Dinv18405 Davidia involucrata HOM05D003411 ORTHO05D003914 4.6e-23 110.9 55 89.1
Actinidia21264 Actinidia chinensis HOM05D003411 ORTHO05D003914 7.9e-23 110.2 55 90.9
MSTRG.9788 Avicennia marina HOM05D003411 ORTHO05D003914 7.9e-23 110.2 55 89.1
CSS0031323 Camellia sinensis var. sinensis HOM05D003411 ORTHO05D003914 1.0e-22 109.8 55 89.1
Lj6C367T9 Lonicera japonica HOM05D003411 ORTHO05D003914 1.0e-22 109.8 55 85.5
Lalb_Chr23g0278281 Lupinus albus HOM05D003411 ORTHO05D003914 1.0e-22 109.8 55 89.1
Manes.01G003200 Manihot esculenta HOM05D003411 ORTHO05D003914 1.0e-22 109.8 55 89.1
Nitab4.5_0000451g0080 Nicotiana tabacum HOM05D003411 ORTHO05D003914 1.0e-22 109.8 90 62.2
Nn1g08155 Nelumbo nucifera HOM05D003411 ORTHO05D003914 1.3e-22 109.4 55 89.1
THA.LOC104822225 Tarenaya hassleriana HOM05D003411 ORTHO05D003914 1.3e-22 109.4 55 89.1
Aqoxy2G03916 Aquilegia oxysepala HOM05D003411 ORTHO05D003914 1.8e-22 109.0 55 85.5
ECA233G4116 Erigeron canadensis HOM05D003411 ORTHO05D003914 1.8e-22 109.0 55 87.3
HanXRQChr07g0185571 Helianthus annuus HOM05D003411 ORTHO05D003914 1.8e-22 109.0 55 89.1
QL07p010164 Quercus lobata HOM05D003411 ORTHO05D003914 1.8e-22 109.0 55 89.1
Cc03_g09400 Coffea canephora HOM05D003411 ORTHO05D003914 2.3e-22 108.6 55 87.3
DCAR_026664 Daucus carota HOM05D003411 ORTHO05D003914 2.3e-22 108.6 55 87.3
Migut.N00427 Erythranthe guttata HOM05D003411 ORTHO05D003914 2.3e-22 108.6 55 87.3
GSVIVG01021049001 Vitis vinifera HOM05D003411 ORTHO05D003914 2.3e-22 108.6 55 87.3
MELO3C021162.2 Cucumis melo HOM05D003411 ORTHO05D003914 3.0e-22 108.2 55 85.5
Sabra16G0203800 Salix brachista HOM05D003411 ORTHO05D003914 3.0e-22 108.2 55 87.3
vmacro00433 Vaccinium macrocarpon HOM05D003411 ORTHO05D003914 3.0e-22 108.2 55 87.3
Eucgr.H02650 Eucalyptus grandis HOM05D003411 ORTHO05D003914 3.9e-22 107.8 55 85.5
Glyma.05G151300 Glycine max HOM05D003411 ORTHO05D003914 3.9e-22 107.8 55 87.3
THA.LOC104804791 Tarenaya hassleriana HOM05D003411 ORTHO05D003914 3.9e-22 107.8 55 87.3
TAR636G0144 Trochodendron aralioides HOM05D003411 ORTHO05D003914 3.9e-22 107.8 55 87.3
Atru.chr4.1551 Acer truncatum HOM05D003411 ORTHO05D003914 5.1e-22 107.5 55 85.5
Glyma.11G254300 Glycine max HOM05D003411 ORTHO05D003914 5.1e-22 107.5 55 85.5
Thecc.04G193400 Theobroma cacao HOM05D003411 ORTHO05D003914 5.1e-22 107.5 55 85.5
ATR0602G172 Amborella trichopoda HOM05D003411 ORTHO05D003914 6.7e-22 107.1 55 85.5
MBI07_g08879_MAGBIO Magnolia biondii HOM05D003411 ORTHO05D003914 6.7e-22 107.1 55 87.3
Potri.001G321600 Populus trichocarpa HOM05D003411 ORTHO05D003914 6.7e-22 107.1 55 87.3
Sabra17G0053800 Salix brachista HOM05D003411 ORTHO05D003914 6.7e-22 107.1 55 87.3
SGA_v2.0_scaffold19G08787 Striga asiatica HOM05D003411 ORTHO05D003914 6.7e-22 107.1 55 85.5
Glyma.08G108000 Glycine max HOM05D003411 ORTHO05D003914 8.7e-22 106.7 55 85.5
QL06p026812 Quercus lobata HOM05D003411 ORTHO05D003914 8.7e-22 106.7 55 87.3
arahy.Tifrunner.gnm1.ann1.E7M6AK Arachis hypogaea HOM05D003411 ORTHO05D003914 1.1e-21 106.3 55 85.5
arahy.Tifrunner.gnm1.ann1.EMW6AM Arachis hypogaea HOM05D003411 ORTHO05D003914 1.1e-21 106.3 55 85.5
ClCG06G003230 Citrullus lanatus HOM05D003411 ORTHO05D003914 1.1e-21 106.3 55 83.6
Ciclev10004848m.g Citrus clementina HOM05D003411 ORTHO05D003914 1.1e-21 106.3 55 85.5
Duzib212G0817 Durio zibethinus HOM05D003411 ORTHO05D003914 1.1e-21 106.3 55 83.6
Gohir.A10G128900 Gossypium hirsutum HOM05D003411 ORTHO05D003914 1.1e-21 106.3 55 83.6
Rhsim09G0061400 Rhododendron simsii HOM05D003411 ORTHO05D003914 1.1e-21 106.3 55 85.5
Sed0020137 Sechium edule HOM05D003411 ORTHO05D003914 1.1e-21 106.3 55 83.6
Glyma.18G002800 Glycine max HOM05D003411 ORTHO05D003914 1.5e-21 105.9 55 81.8
Gohir.D10G137200 Gossypium hirsutum HOM05D003411 ORTHO05D003914 1.5e-21 105.9 55 83.6
Gorai.011G152400 Gossypium raimondii HOM05D003411 ORTHO05D003914 1.5e-21 105.9 55 83.6
HanXRQChr02g0058461 Helianthus annuus HOM05D003411 ORTHO05D003914 1.5e-21 105.9 55 83.6
Peaxi162Scf00286g01031 Petunia axillaris HOM05D003411 ORTHO05D003914 1.5e-21 105.9 90 60.0
Potri.017G060000 Populus trichocarpa HOM05D003411 ORTHO05D003914 1.5e-21 105.9 55 85.5
Lj6g0005715 Lotus japonicus HOM05D003411 ORTHO05D003914 1.9e-21 105.5 55 83.6
Cfa008639 Carpinus fangiana HOM05D003411 ORTHO05D003914 2.5e-21 105.1 55 83.6
Duzib151G0297 Durio zibethinus HOM05D003411 ORTHO05D003914 2.5e-21 105.1 55 83.6
Gohir.D02G021700 Gossypium hirsutum HOM05D003411 ORTHO05D003914 2.5e-21 105.1 55 81.8
CSS0017016 Camellia sinensis var. sinensis HOM05D003411 ORTHO05D003914 3.3e-21 104.8 55 85.5
CsaV3_6G001060 Cucumis sativus L. HOM05D003411 ORTHO05D003914 3.3e-21 104.8 55 81.8
PGR083G0313 Punica granatum HOM05D003411 ORTHO05D003914 3.3e-21 104.8 55 81.8
CANSAT78G0444 Cannabis sativa HOM05D003411 ORTHO05D003914 4.3e-21 104.4 55 85.5
Thhalv10002510m.g Eutrema salsugineum HOM05D003411 ORTHO05D003914 4.3e-21 104.4 69 72.5
Gohir.A02G018400 Gossypium hirsutum HOM05D003411 ORTHO05D003914 4.3e-21 104.4 55 83.6
CiPaw.01G115300 Carya illinoinensis HOM05D003411 ORTHO05D003914 5.6e-21 104.0 55 83.6
CiPaw.02G062900 Carya illinoinensis HOM05D003411 ORTHO05D003914 5.6e-21 104.0 55 85.5
Haze_11665 Corylus avellana HOM05D003411 ORTHO05D003914 5.6e-21 104.0 55 83.6
PSO017G0142 Papaver somniferum HOM05D003411 ORTHO05D003914 5.6e-21 104.0 55 83.6
Sc07g0006160 Simmondsia chinensis HOM05D003411 ORTHO05D003914 7.4e-21 103.6 55 80.0
TPR.G28943 Trifolium pratense HOM05D003411 ORTHO05D003914 7.4e-21 103.6 55 81.8
CAN.G1155.14 Capsicum annuum HOM05D003411 ORTHO05D003914 9.6e-21 103.2 58 74.1
TWI53G0146 Tripterygium wilfordii HOM05D003411 ORTHO05D003914 9.6e-21 103.2 55 83.6
Carub.0003s2410 Capsella rubella HOM05D003411 ORTHO05D003914 1.3e-20 102.8 55 83.6
Gorai.005G027200 Gossypium raimondii HOM05D003411 ORTHO05D003914 1.3e-20 102.8 55 80.0
Lsat_1_v5_gn_6_59580 Lactuca sativa HOM05D003411 ORTHO05D003914 1.3e-20 102.8 55 83.6
VMungo1383G0705 Vigna mungo HOM05D003411 ORTHO05D003914 1.3e-20 102.8 55 80.0
Aa31LG9G3320 Aethionema arabicum HOM05D003411 ORTHO05D003914 1.6e-20 102.4 55 80.0
AL7G42390 Arabidopsis lyrata HOM05D003411 ORTHO05D003914 1.6e-20 102.4 55 78.2
AT4G14040 Arabidopsis thaliana HOM05D003411 ORTHO05D003914 1.6e-20 102.4 55 78.2
BcaB04g18108 Brassica carinata HOM05D003411 ORTHO05D003914 1.6e-20 102.4 55 78.2
BcaC07g37715 Brassica carinata HOM05D003411 ORTHO05D003914 1.6e-20 102.4 55 78.2
A08p10280 Brassica napus HOM05D003411 ORTHO05D003914 1.6e-20 102.4 55 78.2
BolC8t48094H Brassica oleracea HOM05D003411 ORTHO05D003914 1.6e-20 102.4 55 78.2
BraA08t33024Z Brassica rapa HOM05D003411 ORTHO05D003914 1.6e-20 102.4 55 78.2
CiPaw.02G063100 Carya illinoinensis HOM05D003411 ORTHO05D003914 1.6e-20 102.4 55 83.6
Ca_16422_v3 Cicer arietinum L. HOM05D003411 ORTHO05D003914 1.6e-20 102.4 55 81.8
Phvul.001G265900 Phaseolus vulgaris HOM05D003411 ORTHO05D003914 1.6e-20 102.4 55 80.0
Sp7g11850 Schrenkiella parvula HOM05D003411 ORTHO05D003914 1.6e-20 102.4 55 78.2
Sopen09g035330 Solanum pennellii HOM05D003411 ORTHO05D003914 1.6e-20 102.4 90 58.9
PGSC0003DMG400020582 Solanum tuberosum HOM05D003411 ORTHO05D003914 1.6e-20 102.4 90 58.9
BcaB06g26541 Brassica carinata HOM05D003411 ORTHO05D003914 2.1e-20 102.1 55 83.6
BcaC06g35570 Brassica carinata HOM05D003411 ORTHO05D003914 2.1e-20 102.1 55 83.6
C07p13410 Brassica napus HOM05D003411 ORTHO05D003914 2.1e-20 102.1 55 83.6
BolC7t41836H Brassica oleracea HOM05D003411 ORTHO05D003914 2.1e-20 102.1 55 83.6
BraA07t28648Z Brassica rapa HOM05D003411 ORTHO05D003914 2.1e-20 102.1 55 83.6
AUR62018543 Chenopodium quinoa HOM05D003411 ORTHO05D003914 2.1e-20 102.1 55 81.8
Hund19016 Selenicereus undatus HOM05D003411 ORTHO05D003914 2.1e-20 102.1 55 80.0
SEGI_38348 Sequoiadendron giganteum HOM05D003411 ORTHO05D003914 2.1e-20 102.1 55 81.8
AT3G23800 Arabidopsis thaliana HOM05D003411 ORTHO05D003914 2.8e-20 101.7 55 81.8
Cpa.g.sc157.38 Carica papaya HOM05D003411 ORTHO05D003914 2.8e-20 101.7 55 80.0
BcaB02g08636 Brassica carinata HOM05D003411 ORTHO05D003914 3.7e-20 101.3 55 76.4
BcaC02g09366 Brassica carinata HOM05D003411 ORTHO05D003914 3.7e-20 101.3 55 76.4
A04p08100 Brassica napus HOM05D003411 ORTHO05D003914 3.7e-20 101.3 55 76.4
C04p41760 Brassica napus HOM05D003411 ORTHO05D003914 3.7e-20 101.3 55 76.4
BolC4t25757H Brassica oleracea HOM05D003411 ORTHO05D003914 3.7e-20 101.3 55 76.4
BraA04t16498Z Brassica rapa HOM05D003411 ORTHO05D003914 3.7e-20 101.3 55 76.4
CDE07G1304 Ceratophyllum demersum HOM05D003411 ORTHO05D003914 3.7e-20 101.3 55 83.6
AUR62020875 Chenopodium quinoa HOM05D003411 ORTHO05D003914 3.7e-20 101.3 55 81.8
Medtr3g084410 Medicago truncatula HOM05D003411 ORTHO05D003914 3.7e-20 101.3 55 80.0
unitig_62.g23161 Utricularia gibba HOM05D003411 ORTHO05D003914 3.7e-20 101.3 56 83.9
CARHR220050 Cardamine hirsuta HOM05D003411 ORTHO05D003914 4.8e-20 100.9 55 78.2
PSO063G3966 Papaver somniferum HOM05D003411 ORTHO05D003914 4.8e-20 100.9 55 81.8
Ah.13g077880 Amaranthus hybridus HOM05D003411 ORTHO05D003914 6.2e-20 100.5 55 80.0
CARHR099780 Cardamine hirsuta HOM05D003411 ORTHO05D003914 6.2e-20 100.5 55 80.0
Thhalv10025040m.g Eutrema salsugineum HOM05D003411 ORTHO05D003914 6.2e-20 100.5 55 76.4
Psat5g099520 Pisum sativum HOM05D003411 ORTHO05D003914 6.2e-20 100.5 55 80.0
Solyc09g092430.3 Solanum lycopersicum HOM05D003411 ORTHO05D003914 8.1e-20 100.1 55 80.0
EL10Ac3g07442 Beta vulgaris HOM05D003411 ORTHO05D003914 1.1e-19 99.8 55 78.2
CANSAT78G1476 Cannabis sativa HOM05D003411 ORTHO05D003914 1.1e-19 99.8 54 81.5
CDE04G2948 Ceratophyllum demersum HOM05D003411 ORTHO05D003914 1.4e-19 99.4 55 81.8
Os01g0916400 Oryza sativa ssp. japonica HOM05D003411 ORTHO05D003914 1.4e-19 99.4 55 80.0
Zm00001eb143460 Zea mays HOM05D003411 ORTHO05D003914 1.4e-19 99.4 55 80.0
Hma1.2p1_2624F.1_g325610 Hydrangea macrophylla HOM05D003411 ORTHO05D003914 1.8e-19 99.0 45 95.6
AL7G42400 Arabidopsis lyrata HOM05D003411 ORTHO05D003914 2.4e-19 98.6 55 78.2
AT4G14030 Arabidopsis thaliana HOM05D003411 ORTHO05D003914 2.4e-19 98.6 55 78.2
BcaC07g37697 Brassica carinata HOM05D003411 ORTHO05D003914 3.1e-19 98.2 55 76.4
A08p10260 Brassica napus HOM05D003411 ORTHO05D003914 3.1e-19 98.2 55 76.4
BolC8t48088H Brassica oleracea HOM05D003411 ORTHO05D003914 3.1e-19 98.2 55 76.4
BraA08t33023Z Brassica rapa HOM05D003411 ORTHO05D003914 3.1e-19 98.2 55 76.4
CSS0027208 Camellia sinensis var. sinensis HOM05D003411 ORTHO05D003914 3.1e-19 98.2 55 85.5
A07p08590 Brassica napus HOM05D003411 ORTHO05D003914 4.0e-19 97.8 55 81.8
Carub.0007s2838 Capsella rubella HOM05D003411 ORTHO05D003914 4.0e-19 97.8 55 76.4
COL.COLO4_05435 Corchorus olitorius HOM05D003411 ORTHO05D003914 4.0e-19 97.8 55 76.4
CARHR220040 Cardamine hirsuta HOM05D003411 ORTHO05D003914 5.3e-19 97.4 55 76.4
Thhalv10024991m.g Eutrema salsugineum HOM05D003411 ORTHO05D003914 5.3e-19 97.4 55 76.4
Sp7g11830 Schrenkiella parvula HOM05D003411 ORTHO05D003914 5.3e-19 97.4 55 76.4
arahy.Tifrunner.gnm1.ann1.GXY8DM Arachis hypogaea HOM05D003411 ORTHO05D003914 6.9e-19 97.1 45 93.3
BcaB04g18106 Brassica carinata HOM05D003411 ORTHO05D003914 6.9e-19 97.1 55 74.5
ATR0069G019 Amborella trichopoda HOM05D003411 ORTHO05D003914 9.0e-19 96.7 55 78.2
Gorai.005G027300 Gossypium raimondii HOM05D003411 ORTHO05D003914 1.5e-18 95.9 55 76.4
BcaB02g08638 Brassica carinata HOM05D003411 ORTHO05D003914 2.0e-18 95.5 55 76.4
A04p08110 Brassica napus HOM05D003411 ORTHO05D003914 2.0e-18 95.5 55 76.4
C04p41770 Brassica napus HOM05D003411 ORTHO05D003914 2.0e-18 95.5 55 76.4
BolC4t25759H Brassica oleracea HOM05D003411 ORTHO05D003914 2.0e-18 95.5 55 76.4
BraA04t16500Z Brassica rapa HOM05D003411 ORTHO05D003914 2.0e-18 95.5 55 76.4
Carub.0007s2839 Capsella rubella HOM05D003411 ORTHO05D003914 4.5e-18 94.4 55 74.5
Gohir.A02G018500 Gossypium hirsutum HOM05D003411 ORTHO05D003914 4.5e-18 94.4 55 74.5
Gohir.D02G021800 Gossypium hirsutum HOM05D003411 ORTHO05D003914 4.5e-18 94.4 55 74.5
BcaC02g09367 Brassica carinata HOM05D003411 ORTHO05D003914 5.8e-18 94.0 55 74.5
Gohir.A02G018900 Gossypium hirsutum HOM05D003411 ORTHO05D003914 5.8e-18 94.0 55 72.7
Pp3c11_15680 Physcomitrium patens HOM05D003411 ORTHO05D003914 7.6e-18 93.6 55 74.5
PSO063G6832 Papaver somniferum HOM05D003411 ORTHO05D003914 1.3e-17 92.8 56 75.0
AagrBONN_evm.TU.Sc2ySwM_228.5065 Anthoceros agrestis HOM05D003411 ORTHO05D003914 2.9e-17 91.7 55 72.7
Mapoly0004s0070 Marchantia polymorpha HOM05D003411 ORTHO05D003914 1.1e-16 89.7 55 69.1
SalBow8G4879 Salvia bowleyana HOM05D003411 ORTHO05D003914 4.2e-16 87.8 55 69.1
BcaC07g37696 Brassica carinata HOM05D003411 ORTHO05D003914 7.1e-16 87.0 55 69.1
A08p10270 Brassica napus HOM05D003411 ORTHO05D003914 7.1e-16 87.0 55 69.1
BolC8t48092H Brassica oleracea HOM05D003411 ORTHO05D003914 7.1e-16 87.0 55 69.1
BraA08t33025Z Brassica rapa HOM05D003411 ORTHO05D003914 7.1e-16 87.0 55 69.1
BcaB04g18107 Brassica carinata HOM05D003411 ORTHO05D003914 9.3e-16 86.7 55 69.1
PSO017G4415 Papaver somniferum HOM05D003411 ORTHO05D003914 1.2e-15 86.3 55 70.9
SMO230G0057 Selaginella moellendorffii HOM05D003411 ORTHO05D003914 6.0e-15 84.0 55 67.3
SHI06459 Sapria himalayana HOM05D003411 ORTHO05D003914 8.7e-14 80.1 38 86.8
Gohir.A02G018300 Gossypium hirsutum HOM05D003411 ORTHO05D003914 1.5e-13 79.3 55 61.8
Gohir.D02G021600 Gossypium hirsutum HOM05D003411 ORTHO05D003914 1.9e-13 79.0 52 65.4
Gorai.005G027000 Gossypium raimondii HOM05D003411 ORTHO05D003914 1.9e-13 79.0 52 65.4
Gorai.005G027100 Gossypium raimondii HOM05D003411 ORTHO05D003914 1.9e-13 79.0 52 65.4
Cfa010561 Carpinus fangiana HOM05D003411 ORTHO05D003914 3.3e-13 78.2 40 85.0
Gohir.D02G021500 Gossypium hirsutum HOM05D003411 ORTHO05D003914 3.3e-13 78.2 52 65.4
Cre03.g166050 Chlamydomonas reinhardtii HOM05D003411 ORTHO05D003914 1.2e-07 59.7 55 49.1


User provided reference genes

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