Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0214021 Rosa chinensis HOM05D003706 ORTHO05D004487 1.1e-39 166.0 78 100.0
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 1.2e-20 102.8 68 75.0
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 4.5e-20 100.9 68 73.5
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 4.5e-20 100.9 68 73.5
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 4.5e-20 100.9 68 73.5
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 7.7e-20 100.1 67 74.6
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 7.7e-20 100.1 67 74.6
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 5.5e-18 94.0 67 71.6
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 4.7e-17 90.9 67 70.1
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 1.0e-16 89.7 67 68.7
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 1.5e-15 85.9 67 64.2
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 1.5e-15 85.9 60 70.0
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 3.4e-15 84.7 60 70.0
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 5.7e-15 84.0 67 65.7
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 5.7e-15 84.0 60 70.0
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 5.7e-15 84.0 67 67.2
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 5.7e-15 84.0 67 67.2
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 7.5e-15 83.6 59 71.2
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 7.5e-15 83.6 59 71.2
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 9.8e-15 83.2 66 65.2
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.3e-14 82.8 67 62.7
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 1.3e-14 82.8 67 62.7
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 1.3e-14 82.8 67 64.2
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 1.3e-14 82.8 67 62.7
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 1.7e-14 82.4 67 62.7
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 1.7e-14 82.4 67 64.2
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 1.7e-14 82.4 54 74.1
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 2.2e-14 82.0 59 69.5
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 2.2e-14 82.0 54 72.2
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 2.2e-14 82.0 54 72.2
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 2.2e-14 82.0 54 72.2
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 2.9e-14 81.6 59 69.5
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 2.9e-14 81.6 61 65.6
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 2.9e-14 81.6 54 72.2
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 2.9e-14 81.6 60 65.0
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 2.9e-14 81.6 54 72.2
Actinidia02181 Actinidia chinensis HOM05D003706 ORTHO05D004487 3.7e-14 81.3 59 69.5
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 3.7e-14 81.3 67 62.7
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 3.7e-14 81.3 67 61.2
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 3.7e-14 81.3 59 71.2
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 3.7e-14 81.3 61 68.9
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 4.9e-14 80.9 67 58.2
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 4.9e-14 80.9 67 61.2
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 4.9e-14 80.9 59 71.2
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 4.9e-14 80.9 67 61.2
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 4.9e-14 80.9 59 67.8
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 4.9e-14 80.9 59 69.5
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 4.9e-14 80.9 67 62.7
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 4.9e-14 80.9 62 66.1
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 4.9e-14 80.9 67 65.7
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 6.3e-14 80.5 59 69.5
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 6.3e-14 80.5 59 71.2
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 6.3e-14 80.5 59 69.5
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 6.3e-14 80.5 61 68.9
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 6.3e-14 80.5 61 68.9
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 8.3e-14 80.1 68 63.2
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 8.3e-14 80.1 59 67.8
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 8.3e-14 80.1 59 69.5
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 8.3e-14 80.1 67 62.7
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 8.3e-14 80.1 46 80.4
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 1.1e-13 79.7 59 67.8
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 1.1e-13 79.7 67 59.7
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 1.1e-13 79.7 67 59.7
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 1.1e-13 79.7 67 59.7
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 1.1e-13 79.7 60 68.3
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 1.1e-13 79.7 59 67.8
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.1e-13 79.7 59 69.5
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 1.1e-13 79.7 59 67.8
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 1.1e-13 79.7 70 61.4
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 1.4e-13 79.3 54 70.4
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 1.4e-13 79.3 65 63.1
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 1.8e-13 79.0 67 58.2
BcaC06g33562 Brassica carinata HOM05D003706 ORTHO05D004487 1.8e-13 79.0 67 59.7
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 1.8e-13 79.0 67 59.7
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 1.8e-13 79.0 67 59.7
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 1.8e-13 79.0 58 69.0
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 2.4e-13 78.6 64 60.9
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 2.4e-13 78.6 64 60.9
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 2.4e-13 78.6 67 61.2
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 2.4e-13 78.6 58 69.0
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 2.4e-13 78.6 58 69.0
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 2.4e-13 78.6 67 61.2
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 2.4e-13 78.6 60 65.0
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 2.4e-13 78.6 67 59.7
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 3.2e-13 78.2 61 62.3
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 3.2e-13 78.2 59 67.8
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 3.2e-13 78.2 67 59.7
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 4.1e-13 77.8 67 56.7
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 4.1e-13 77.8 67 59.7
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 4.1e-13 77.8 66 57.6
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 4.1e-13 77.8 60 70.0
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 5.4e-13 77.4 67 58.2
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 5.4e-13 77.4 59 67.8
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 5.4e-13 77.4 62 61.3
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 7.0e-13 77.0 59 64.4
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 9.2e-13 76.6 81 55.6
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 9.2e-13 76.6 58 67.2
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 1.2e-12 76.3 61 60.7
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 1.2e-12 76.3 61 60.7
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 1.2e-12 76.3 61 60.7
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 1.2e-12 76.3 57 64.9
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 1.6e-12 75.9 61 60.7
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 1.6e-12 75.9 59 61.0
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 1.6e-12 75.9 57 66.7
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 1.6e-12 75.9 57 66.7
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 1.6e-12 75.9 54 66.7
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 1.6e-12 75.9 67 59.7
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 1.6e-12 75.9 67 59.7
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 1.6e-12 75.9 62 64.5
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 1.6e-12 75.9 58 65.5
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 2.0e-12 75.5 61 62.3
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 2.0e-12 75.5 59 62.7
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 2.0e-12 75.5 59 62.7
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 2.7e-12 75.1 61 65.6
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 3.5e-12 74.7 67 58.2
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 4.6e-12 74.3 59 59.3
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 4.6e-12 74.3 61 59.0
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 4.6e-12 74.3 61 59.0
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 4.6e-12 74.3 56 67.9
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 4.6e-12 74.3 61 62.3
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 4.6e-12 74.3 61 62.3
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 4.6e-12 74.3 67 61.2
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 5.9e-12 73.9 67 58.2
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 5.9e-12 73.9 67 58.2
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 5.9e-12 73.9 57 64.9
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 7.8e-12 73.6 57 66.7
TWI15G0745 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 7.8e-12 73.6 67 58.2
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 1.0e-11 73.2 47 72.3
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 1.7e-11 72.4 44 75.0
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 1.7e-11 72.4 67 56.7
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 1.7e-11 72.4 46 71.7
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 3.9e-11 71.2 58 65.5
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 1.5e-10 69.3 58 62.1
Sopen08g026630 Solanum pennellii HOM05D003706 ORTHO05D004487 1.5e-10 69.3 58 62.1
arahy.Tifrunner.gnm1.ann1.77EYCF Arachis hypogaea HOM05D003706 ORTHO05D004487 2.5e-10 68.6 70 52.9
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 3.3e-10 68.2 58 62.1
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 3.3e-10 68.2 44 70.5
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 5.6e-10 67.4 57 57.9
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 2.1e-09 65.5 44 72.7
MBI04_g33725_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 2.8e-09 65.1 43 67.4
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 4.7e-09 64.3 44 63.6
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 8.0e-09 63.5 67 55.2
BcaC06g33564 Brassica carinata HOM05D003706 ORTHO05D004487 5.2e-08 60.8 84 45.2
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 6.8e-08 60.5 59 57.6
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 2.6e-07 58.5 104 38.5
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 4.4e-07 57.8 47 61.7
Os04g0667500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 5.8e-07 57.4 44 59.1
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 7.5e-07 57.0 45 62.2
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 9.8e-07 56.6 45 64.4
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 4.9e-06 54.3 52 48.1


User provided reference genes

Program Settings