Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 5.0e-67 258.1 177 100.0
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 8.9e-64 247.3 174 83.3
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 8.9e-64 247.3 174 83.3
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 8.9e-64 247.3 174 83.3
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.5e-63 244.2 174 82.8
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.5e-63 244.2 174 84.5
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 3.1e-56 222.2 167 80.8
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 3.5e-52 208.8 167 77.8
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 5.1e-51 204.9 167 75.4
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 3.1e-48 195.7 173 83.2
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 6.8e-48 194.5 167 84.4
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.2e-47 193.7 174 70.1
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.2e-47 193.7 167 84.4
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 1.2e-47 193.7 167 84.4
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.0e-47 193.0 175 71.4
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 4.4e-47 191.8 168 86.3
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 3.8e-46 188.7 173 80.3
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 4.9e-46 188.3 168 83.9
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 2.4e-45 186.0 166 72.3
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 3.2e-45 185.7 175 67.4
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.6e-44 183.3 168 71.4
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 1.6e-44 183.3 176 66.5
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 2.1e-44 183.0 176 81.8
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 3.5e-44 182.2 174 79.9
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 6.0e-44 181.4 174 66.1
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.0e-43 180.6 175 67.4
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 1.3e-43 180.3 177 53.7
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.3e-43 180.3 176 80.1
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 1.7e-43 179.9 174 79.3
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.7e-43 179.9 176 80.7
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.7e-43 179.9 176 80.7
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 3.0e-43 179.1 174 66.1
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 3.0e-43 179.1 171 80.1
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 6.6e-43 177.9 165 80.0
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 6.6e-43 177.9 174 68.4
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.1e-42 177.2 166 68.1
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 3.3e-42 175.6 171 69.6
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 4.3e-42 175.3 168 67.9
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 4.3e-42 175.3 173 64.7
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 4.3e-42 175.3 174 67.8
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 5.6e-42 174.9 159 83.0
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 7.3e-42 174.5 171 78.9
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 7.3e-42 174.5 171 80.1
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 9.6e-42 174.1 170 75.9
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 1.3e-41 173.7 173 68.8
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 1.6e-41 173.3 174 73.0
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 2.1e-41 172.9 166 80.7
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 2.1e-41 172.9 171 67.3
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.8e-41 172.6 170 65.3
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 2.8e-41 172.6 164 81.1
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 2.8e-41 172.6 164 81.1
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 2.8e-41 172.6 174 74.7
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 3.6e-41 172.2 175 75.4
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 1.4e-40 170.2 166 79.5
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.4e-40 170.2 160 73.1
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 1.4e-40 170.2 173 63.6
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 1.4e-40 170.2 166 78.3
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 1.8e-40 169.9 165 69.1
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 2.4e-40 169.5 169 71.0
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 2.4e-40 169.5 174 74.7
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 3.1e-40 169.1 173 64.7
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 3.1e-40 169.1 180 78.9
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 5.3e-40 168.3 173 64.7
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 5.3e-40 168.3 173 76.9
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 1.5e-39 166.8 164 79.3
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.0e-39 166.4 173 75.1
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 2.6e-39 166.0 175 71.4
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 2.6e-39 166.0 165 68.5
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 2.6e-39 166.0 174 78.7
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.8e-39 164.9 175 53.7
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 5.8e-39 164.9 174 79.3
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 9.9e-39 164.1 165 67.9
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 9.9e-39 164.1 165 77.6
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 9.9e-39 164.1 173 65.3
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.3e-38 163.7 173 64.2
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 1.3e-38 163.7 175 53.1
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 1.7e-38 163.3 174 68.4
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 2.2e-38 162.9 167 79.0
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 2.9e-38 162.5 164 54.3
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 3.8e-38 162.2 231 42.9
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 6.4e-38 161.4 163 77.3
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.1e-37 160.6 172 73.8
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 1.1e-37 160.6 174 75.9
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 1.4e-37 160.2 169 59.8
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.4e-37 160.2 169 53.3
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.9e-37 159.8 172 72.1
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 4.2e-37 158.7 175 74.9
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 5.4e-37 158.3 172 72.1
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.6e-36 156.8 163 73.6
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.1e-36 156.4 174 64.9
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.1e-36 156.4 182 61.0
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 2.7e-36 156.0 170 67.1
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.5e-36 155.6 173 62.4
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 3.5e-36 155.6 173 54.3
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 4.6e-36 155.2 173 72.3
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 6.0e-36 154.8 166 63.3
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 1.0e-35 154.1 161 76.4
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 1.0e-35 154.1 161 76.4
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 3.9e-35 152.1 165 61.8
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 3.9e-35 152.1 146 71.9
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 6.6e-35 151.4 168 63.1
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 8.7e-35 151.0 175 70.3
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 1.5e-34 150.2 162 64.8
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 3.3e-34 149.1 167 52.7
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 4.3e-34 148.7 173 61.3
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 4.3e-34 148.7 173 61.3
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 7.3e-34 147.9 176 73.9
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 7.3e-34 147.9 177 65.0
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 7.3e-34 147.9 173 60.7
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 7.3e-34 147.9 173 61.3
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.6e-33 146.7 177 72.9
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.8e-33 146.0 177 72.9
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 6.2e-33 144.8 176 73.3
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 1.1e-32 144.1 176 73.3
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 1.4e-32 143.7 167 61.7
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 1.4e-32 143.7 167 61.7
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 9.0e-32 141.0 157 61.8
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 9.0e-32 141.0 157 61.8
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 9.0e-32 141.0 157 61.8
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 9.0e-32 141.0 169 72.8
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 1.2e-31 140.6 169 73.4
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 1.5e-31 140.2 169 72.8
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 1.5e-31 140.2 169 72.8
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 2.0e-31 139.8 171 73.7
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 5.8e-31 138.3 176 59.7
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 5.8e-31 138.3 164 48.2
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 1.3e-30 137.1 162 60.5
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.7e-30 136.7 176 67.0
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 2.2e-30 136.3 171 71.3
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 4.9e-30 135.2 170 71.2
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 6.4e-30 134.8 167 72.5
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 8.4e-30 134.4 165 50.9
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 3.2e-29 132.5 162 58.0
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 6.0e-28 128.3 148 75.7
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 7.9e-28 127.9 132 68.9
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 1.9e-26 123.2 164 54.9
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 5.6e-26 121.7 129 69.8
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 8.1e-25 117.9 148 58.8
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 5.5e-21 105.1 135 60.7
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 7.1e-21 104.8 101 74.3
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.2e-20 104.0 84 61.9
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 2.7e-20 102.8 101 73.3
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 6.0e-20 101.7 111 67.6
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 1.8e-19 100.1 121 63.6
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 5.7e-18 95.1 152 52.6
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 5.7e-18 95.1 81 59.3
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 1.1e-16 90.9 108 42.6
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.4e-16 89.7 101 68.3
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 1.0e-11 74.3 48 66.7
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 2.3e-11 73.2 44 75.0


User provided reference genes

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