Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 8.0e-28 126.3 62 100.0
RcHm_v2.0_Chr7g0213891 Rosa chinensis HOM05D002342 ORTHO05D002407 8.0e-28 126.3 62 100.0
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 6.4e-25 116.7 62 90.3
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 6.4e-25 116.7 62 90.3
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 6.4e-25 116.7 62 90.3
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 4.1e-24 114.0 62 88.7
Prupe.1G159000 Prunus persica HOM05D002342 ORTHO05D002407 3.9e-22 107.5 62 80.6
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 8.6e-22 106.3 62 82.3
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 5.8e-18 93.6 61 70.5
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 5.8e-18 93.6 61 70.5
Lj6A516T55 Lonicera japonica HOM05D002342 ORTHO05D002407 1.3e-17 92.4 60 68.3
Lj6C526T11 Lonicera japonica HOM05D002342 ORTHO05D002407 1.3e-17 92.4 60 68.3
CiPaw.01G119300 Carya illinoinensis HOM05D002342 ORTHO05D002407 3.7e-17 90.9 61 68.9
CiPaw.01G119000 Carya illinoinensis HOM05D002342 ORTHO05D002407 6.4e-17 90.1 61 73.8
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 1.4e-16 89.0 60 71.7
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 1.9e-16 88.6 60 65.0
Haze_11627 Corylus avellana HOM05D002342 ORTHO05D002407 2.4e-16 88.2 59 66.1
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 2.4e-16 88.2 56 67.9
QL05p014631 Quercus lobata HOM05D002342 ORTHO05D002407 3.2e-16 87.8 55 76.4
Dinv27217 Davidia involucrata HOM05D002342 ORTHO05D002407 4.1e-16 87.4 62 64.5
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 5.4e-16 87.0 61 68.9
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 3.5e-15 84.3 61 63.9
Eucgr.A01634 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.5e-15 84.3 61 63.9
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 3.5e-15 84.3 61 63.9
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 3.5e-15 84.3 61 63.9
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 3.5e-15 84.3 61 63.9
Lj6C517T2 Lonicera japonica HOM05D002342 ORTHO05D002407 3.5e-15 84.3 53 69.8
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 3.5e-15 84.3 61 62.3
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 1.0e-14 82.8 53 71.7
Lj6C523G2 Lonicera japonica HOM05D002342 ORTHO05D002407 1.0e-14 82.8 53 67.9
MD04G1013100 Malus domestica HOM05D002342 ORTHO05D002407 1.0e-14 82.8 61 68.9
Sed0007147 Sechium edule HOM05D002342 ORTHO05D002407 1.0e-14 82.8 57 68.4
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.7e-14 82.0 55 67.3
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.7e-14 82.0 61 60.7
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.7e-14 82.0 61 60.7
Hma1.2p1_0383F.1_g140560 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 2.3e-14 81.6 61 65.6
TAR365G0582 Trochodendron aralioides HOM05D002342 ORTHO05D002407 2.3e-14 81.6 61 62.3
Eucgr.H02741 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.9e-14 80.9 56 64.3
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 3.9e-14 80.9 55 65.5
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 5.0e-14 80.5 55 61.8
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 5.0e-14 80.5 57 64.9
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 6.6e-14 80.1 60 61.7
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 6.6e-14 80.1 53 66.0
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 6.6e-14 80.1 62 59.7
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 6.6e-14 80.1 51 70.6
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 8.6e-14 79.7 60 60.0
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 8.6e-14 79.7 61 65.6
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 1.1e-13 79.3 56 58.9
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 1.1e-13 79.3 61 63.9
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 1.5e-13 79.0 61 62.3
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 1.5e-13 79.0 61 62.3
AUR62018579 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.9e-13 78.6 55 63.6
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.9e-13 78.6 55 63.6
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 2.5e-13 78.2 61 57.4
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 3.3e-13 77.8 56 66.1
Hma1.2p1_0383F.1_g140620 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 3.3e-13 77.8 62 62.9
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 4.3e-13 77.4 62 54.8
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 7.3e-13 76.6 61 57.4
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 9.5e-13 76.3 61 54.1
Lj6A517T28 Lonicera japonica HOM05D002342 ORTHO05D002407 9.5e-13 76.3 53 64.2
Lj6C525G6 Lonicera japonica HOM05D002342 ORTHO05D002407 9.5e-13 76.3 53 64.2
Nitab4.5_0006215g0010 Nicotiana tabacum HOM05D002342 ORTHO05D002407 9.5e-13 76.3 51 66.7
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 1.2e-12 75.9 51 68.6
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 1.6e-12 75.5 51 62.7
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 1.6e-12 75.5 52 61.5
Lalb_Chr12g0205541 Lupinus albus HOM05D002342 ORTHO05D002407 2.1e-12 75.1 55 56.4
PGSC0003DMG402026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 2.8e-12 74.7 52 67.3
VMungo1127G2260 Vigna mungo HOM05D002342 ORTHO05D002407 2.8e-12 74.7 62 53.2
VMungo1383G0106 Vigna mungo HOM05D002342 ORTHO05D002407 2.8e-12 74.7 62 53.2
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 3.6e-12 74.3 63 57.1
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 3.6e-12 74.3 52 65.4
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 4.7e-12 73.9 62 56.5
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 6.2e-12 73.6 54 57.4
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.1e-11 72.8 52 61.5
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 1.1e-11 72.8 62 59.7
DCAR_030811 Daucus carota HOM05D002342 ORTHO05D002407 1.4e-11 72.4 53 56.6
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.4e-11 72.4 51 62.7
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 1.8e-11 72.0 52 65.4
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 1.8e-11 72.0 62 59.7
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.8e-11 72.0 62 59.7
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.8e-11 72.0 62 59.7
CAN.G1333.3 Capsicum annuum HOM05D002342 ORTHO05D002407 3.1e-11 71.2 51 62.7
FAN27G2824 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.1e-11 71.2 62 59.7
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 5.2e-11 70.5 60 43.3
HanXRQChr16g0515531 Helianthus annuus HOM05D000002 ORTHO05D000001 5.2e-11 70.5 60 50.0
Atru.chr4.1622 Acer truncatum HOM05D002342 ORTHO05D002407 6.8e-11 70.1 52 63.5
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 6.8e-11 70.1 50 66.0
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 8.9e-11 69.7 52 59.6
Hma1.2p1_0383F.1_g140370 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 8.9e-11 69.7 54 59.3
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 1.2e-10 69.3 60 48.3
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 1.5e-10 68.9 50 66.0
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 1.5e-10 68.9 46 60.9
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 2.0e-10 68.6 62 48.4
Oeu045313.1 Olea europaea HOM05D002342 ORTHO05D002407 2.0e-10 68.6 53 52.8
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 2.0e-10 68.6 55 58.2
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 2.6e-10 68.2 54 59.3
CAN.G1333.8 Capsicum annuum HOM05D002342 ORTHO05D002407 3.4e-10 67.8 47 70.2
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 4.4e-10 67.4 56 55.4
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 7.5e-10 66.6 49 63.3
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 1.3e-09 65.9 53 58.5
Solyc09g092100.4 Solanum lycopersicum HOM05D002342 ORTHO05D002407 1.3e-09 65.9 47 68.1
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 1.3e-09 65.9 47 68.1
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 2.2e-09 65.1 57 54.4
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 2.9e-09 64.7 57 56.1
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 2.9e-09 64.7 57 54.4
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 2.9e-09 64.7 51 56.9
Aa31LG9G3860 Aethionema arabicum HOM05D002342 ORTHO05D002407 3.7e-09 64.3 60 53.3
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 3.7e-09 64.3 60 53.3
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 3.7e-09 64.3 49 61.2
Atru.chr4.1627 Acer truncatum HOM05D002342 ORTHO05D002407 4.9e-09 63.9 45 64.4
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 4.9e-09 63.9 55 50.9
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 8.3e-09 63.2 57 54.4
Eucgr.H02762 Eucalyptus grandis HOM05D002342 ORTHO05D002407 8.3e-09 63.2 49 53.1
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.1e-08 62.8 53 58.5
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 1.4e-08 62.4 57 52.6
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 1.4e-08 62.4 57 52.6
C08p07730 Brassica napus HOM05D002342 ORTHO05D002407 1.4e-08 62.4 57 52.6
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 1.4e-08 62.4 57 52.6
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 1.4e-08 62.4 57 52.6
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 1.4e-08 62.4 53 56.6
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 1.9e-08 62.0 57 52.6
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 1.9e-08 62.0 57 52.6
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 1.9e-08 62.0 57 52.6
Cpa.g.c30822.1 Carica papaya HOM05D002342 ORTHO05D002407 2.4e-08 61.6 54 53.7
Eucgr.H02754 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.4e-08 61.6 49 53.1
Eucgr.H02757 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.4e-08 61.6 49 53.1
Eucgr.H02759 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.4e-08 61.6 49 53.1
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 2.4e-08 61.6 53 50.9
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 4.1e-08 60.8 46 56.5
AL1G18710 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 5.4e-08 60.5 57 54.4
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 5.4e-08 60.5 53 56.6
Eucgr.H02765 Eucalyptus grandis HOM05D002342 ORTHO05D002407 7.1e-08 60.1 49 51.0
Sp1g06930 Schrenkiella parvula HOM05D002342 ORTHO05D002407 7.1e-08 60.1 54 55.6
ECA246G4020 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.6e-07 58.9 48 54.2
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 1.6e-07 58.9 62 40.3
HPP92_028111 Vanilla planifolia HOM05D002342 ORTHO05D002407 1.6e-07 58.9 55 49.1
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 2.1e-07 58.5 53 47.2
Lj6C525G9 Lonicera japonica HOM05D002342 ORTHO05D002407 3.5e-07 57.8 36 63.9
Carub.0001s0765 Capsella rubella HOM05D002342 ORTHO05D002407 4.6e-07 57.4 57 50.9
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 4.6e-07 57.4 53 45.3
CARHR008160 Cardamine hirsuta HOM05D002342 ORTHO05D002407 6.0e-07 57.0 55 50.9
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 6.0e-07 57.0 53 45.3
ATR0829G112 Amborella trichopoda HOM05D002342 ORTHO05D002407 7.8e-07 56.6 50 50.0
A06p05320 Brassica napus HOM05D002342 ORTHO05D002407 1.0e-06 56.2 53 52.8
C05p06400 Brassica napus HOM05D002342 ORTHO05D002407 1.0e-06 56.2 53 52.8
BolC5t29395H Brassica oleracea HOM05D002342 ORTHO05D002407 1.0e-06 56.2 53 52.8
BraA06t23740Z Brassica rapa HOM05D002342 ORTHO05D002407 1.0e-06 56.2 53 52.8
TAR365G0886 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.0e-06 56.2 34 70.6
Thhalv10006953m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 1.7e-06 55.5 57 47.4
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 1.7e-06 55.5 53 47.2


User provided reference genes

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