Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0213881 Rosa chinensis HOM05D002342 ORTHO05D002407 1.7e-185 652.5 323 100.0
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 2.1e-159 565.8 330 86.1
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 4.2e-144 515.0 330 76.7
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 1.1e-141 506.9 324 76.5
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.5e-141 506.5 330 75.2
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 5.6e-141 504.6 330 74.8
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 1.1e-120 437.2 329 65.7
MD04G1013100 Malus domestica HOM05D002342 ORTHO05D002407 1.8e-118 429.9 329 63.8
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 3.3e-117 425.6 330 64.5
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 2.2e-116 422.9 329 64.1
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.0e-113 414.1 330 62.1
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.1e-112 410.6 330 61.8
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 3.2e-112 409.1 330 61.5
Prupe.1G159000 Prunus persica HOM05D002342 ORTHO05D002407 3.2e-112 409.1 330 63.0
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 1.0e-105 387.5 330 59.1
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 1.5e-101 373.6 331 56.8
Dinv27217 Davidia involucrata HOM05D002342 ORTHO05D002407 1.3e-100 370.5 331 54.1
Lalb_Chr12g0205541 Lupinus albus HOM05D002342 ORTHO05D002407 1.7e-100 370.2 331 55.3
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 1.8e-99 366.7 331 54.1
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 3.1e-99 365.9 331 55.6
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 4.1e-99 365.5 331 54.4
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 2.7e-98 362.8 331 54.4
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 2.7e-98 362.8 331 54.1
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.0e-97 360.9 330 53.6
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 6.5e-97 358.2 331 52.9
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 8.5e-97 357.8 330 53.0
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 1.9e-96 356.7 329 54.1
Atru.chr4.1627 Acer truncatum HOM05D002342 ORTHO05D002407 2.5e-96 356.3 345 52.8
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 2.5e-96 356.3 331 53.2
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 1.6e-95 353.6 330 51.8
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 2.1e-95 353.2 331 53.2
CiPaw.01G119000 Carya illinoinensis HOM05D002342 ORTHO05D002407 8.8e-94 347.8 331 53.5
Atru.chr4.1622 Acer truncatum HOM05D002342 ORTHO05D002407 1.5e-93 347.1 345 50.7
Haze_11627 Corylus avellana HOM05D002342 ORTHO05D002407 2.6e-93 346.3 331 54.1
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 9.8e-93 344.4 332 52.7
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 9.8e-93 344.4 331 53.8
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 1.3e-92 344.0 331 52.0
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.3e-92 344.0 331 52.6
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.3e-92 344.0 331 52.6
Cpa.g.sc1159.3 Carica papaya HOM05D002342 ORTHO05D002407 2.8e-92 342.8 332 51.8
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 2.8e-92 342.8 331 53.5
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 8.3e-92 341.3 333 52.9
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 3.1e-91 339.3 331 51.1
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 3.1e-91 339.3 331 52.0
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 7.0e-91 338.2 330 51.5
Hma1.2p1_0383F.1_g140370 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.2e-90 337.4 324 51.5
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 1.5e-88 330.5 331 49.2
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 2.8e-87 326.2 331 50.2
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 2.8e-87 326.2 331 50.2
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 6.1e-87 325.1 331 50.8
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 1.0e-86 324.3 331 49.5
CAN.G1333.8 Capsicum annuum HOM05D002342 ORTHO05D002407 2.3e-86 323.2 329 48.3
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 1.2e-85 320.9 331 49.2
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 1.2e-85 320.9 331 49.2
VMungo1127G2260 Vigna mungo HOM05D002342 ORTHO05D002407 2.6e-85 319.7 313 50.5
Lj6C525G9 Lonicera japonica HOM05D002342 ORTHO05D002407 5.7e-85 318.5 331 50.2
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 7.5e-85 318.2 331 49.5
Lj6C525G6 Lonicera japonica HOM05D002342 ORTHO05D002407 7.5e-85 318.2 331 50.2
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 7.5e-85 318.2 331 48.9
Eucgr.H02741 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.7e-84 317.0 331 49.5
Lj6C517T2 Lonicera japonica HOM05D002342 ORTHO05D002407 2.8e-84 316.2 328 49.7
Lj6C526T11 Lonicera japonica HOM05D002342 ORTHO05D002407 4.9e-84 315.5 331 48.6
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 1.8e-83 313.5 331 47.7
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 3.1e-83 312.8 330 47.9
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 1.2e-82 310.8 331 48.3
Lj6C523G2 Lonicera japonica HOM05D002342 ORTHO05D002407 4.5e-82 308.9 331 48.9
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 7.8e-82 308.1 329 48.3
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 1.0e-81 307.8 331 46.8
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 1.3e-81 307.4 329 47.1
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 2.3e-81 306.6 331 46.8
Sed0007147 Sechium edule HOM05D002342 ORTHO05D002407 2.3e-81 306.6 331 46.2
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 2.9e-81 306.2 331 47.7
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 5.0e-81 305.4 331 47.4
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 6.6e-81 305.1 331 46.2
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 8.6e-81 304.7 342 46.5
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 1.9e-80 303.5 331 46.5
Oeu045313.1 Olea europaea HOM05D002342 ORTHO05D002407 3.3e-80 302.8 346 46.8
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 4.3e-80 302.4 331 46.2
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 5.6e-80 302.0 331 46.5
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 7.3e-80 301.6 345 46.7
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 7.3e-80 301.6 331 47.4
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 2.1e-79 300.1 329 45.9
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 2.1e-79 300.1 329 46.2
Solyc09g092100.4 Solanum lycopersicum HOM05D002342 ORTHO05D002407 2.1e-79 300.1 329 46.2
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 2.1e-79 300.1 329 46.2
CiPaw.01G119300 Carya illinoinensis HOM05D002342 ORTHO05D002407 6.1e-79 298.5 307 52.4
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 3.0e-78 296.2 418 40.2
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 3.0e-78 296.2 331 45.9
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 8.9e-78 294.7 332 45.2
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.5e-77 293.9 331 45.6
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 2.0e-77 293.5 330 43.9
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 3.4e-77 292.7 331 45.0
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 7.5e-77 291.6 330 43.6
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 7.5e-77 291.6 328 44.2
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 9.8e-77 291.2 331 44.1
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 1.3e-76 290.8 331 45.0
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 2.2e-76 290.0 331 44.1
ECA246G4185 Erigeron canadensis HOM05D002342 ORTHO05D002407 6.4e-76 288.5 352 44.3
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 6.4e-76 288.5 330 42.7
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 8.3e-76 288.1 331 44.7
Hma1.2p1_0383F.1_g140560 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 8.3e-76 288.1 302 49.0
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 1.1e-75 287.7 331 45.3
Lj6A523T33 Lonicera japonica HOM05D002342 ORTHO05D002407 2.4e-75 286.6 306 47.7
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 2.4e-75 286.6 330 43.3
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 3.2e-75 286.2 330 43.0
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 4.1e-75 285.8 330 42.7
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 5.4e-75 285.4 330 42.7
C08p07730 Brassica napus HOM05D002342 ORTHO05D002407 5.4e-75 285.4 330 42.7
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 5.4e-75 285.4 330 42.7
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 2.0e-74 283.5 330 42.7
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 2.7e-74 283.1 329 43.2
Eucgr.A01634 Eucalyptus grandis HOM05D002342 ORTHO05D002407 4.6e-74 282.3 305 47.2
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 1.7e-73 280.4 330 44.8
Eucgr.H02759 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.3e-72 276.2 331 43.8
ECA233G4033 Erigeron canadensis HOM05D002342 ORTHO05D002407 3.6e-71 272.7 332 44.6
Eucgr.H02755 Eucalyptus grandis HOM05D002342 ORTHO05D002407 6.2e-71 271.9 331 42.3
vmacro00454 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 8.0e-71 271.6 272 50.4
Eucgr.H02762 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.1e-70 271.2 331 42.9
Eucgr.H02757 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.4e-70 270.8 331 42.9
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 1.4e-70 270.8 332 44.6
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 3.1e-70 269.6 332 44.6
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 4.9e-68 262.3 330 42.1
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 6.4e-68 261.9 298 45.6
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.6e-66 257.3 331 41.1
SHI00031 Sapria himalayana HOM05D002342 ORTHO05D002407 2.7e-66 256.5 308 44.2
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 7.8e-66 255.0 298 45.0
ATR0829G112 Amborella trichopoda HOM05D002342 ORTHO05D002407 4.3e-64 249.2 340 40.6
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 1.6e-63 247.3 240 51.2
Eucgr.H02754 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.1e-63 246.9 286 43.4
HPP92_003865 Vanilla planifolia HOM05D002342 ORTHO05D002407 4.6e-58 229.2 330 37.0
CAN.G1333.4 Capsicum annuum HOM05D002342 ORTHO05D002407 1.0e-57 228.0 272 42.6
Psat7g074440 Pisum sativum HOM05D002342 ORTHO05D002407 1.3e-57 227.6 246 47.6
Lj6A517T28 Lonicera japonica HOM05D002342 ORTHO05D002407 6.6e-57 225.3 209 55.0
HPP92_028111 Vanilla planifolia HOM05D002342 ORTHO05D002407 6.6e-57 225.3 331 39.0
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 7.3e-56 221.9 331 37.8
Os03g0803700 Oryza sativa ssp. japonica HOM05D002342 ORTHO05D002407 1.1e-54 218.0 332 35.5
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 5.8e-53 212.2 331 38.4
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 5.8e-53 212.2 240 43.8
Eucgr.H02751 Eucalyptus grandis HOM05D002342 ORTHO05D002407 5.4e-51 205.7 230 44.8
SEGI_10632 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 2.3e-49 200.3 336 36.0
Nitab4.5_0006215g0010 Nicotiana tabacum HOM05D002342 ORTHO05D002407 5.4e-43 179.1 299 36.8
HPP92_020883 Vanilla planifolia HOM05D002342 ORTHO05D002407 1.1e-40 171.4 233 41.6
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 8.1e-39 165.2 209 42.1
Lsat_1_v5_gn_8_141841 Lactuca sativa HOM05D002342 ORTHO05D002407 4.2e-35 152.9 197 42.6
Lj6A516T55 Lonicera japonica HOM05D002342 ORTHO05D002407 1.2e-34 151.4 353 32.3
Pp3c21_20720 Physcomitrium patens HOM05D002342 ORTHO05D002407 1.0e-33 148.3 346 29.2
Lsat_1_v5_gn_6_78720 Lactuca sativa HOM05D002342 ORTHO05D002407 6.7e-33 145.6 192 42.2
Mapoly0105s0052 Marchantia polymorpha HOM05D002342 ORTHO05D002407 1.4e-30 137.9 338 29.9
Lsat_1_v5_gn_4_177540 Lactuca sativa HOM05D002342 ORTHO05D002407 4.9e-28 129.4 181 39.8
HanXRQChr16g0515531 Helianthus annuus HOM05D000002 ORTHO05D000001 2.4e-27 127.1 155 43.2
TAR365G0903 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.2e-26 124.8 208 36.5
Cpa.g.c47077 Carica papaya HOM05D002342 ORTHO05D002407 1.1e-24 118.2 86 60.5
SMO337G0030 Selaginella moellendorffii HOM05D002342 ORTHO05D002407 1.5e-24 117.9 333 26.1
AagrBONN_evm.TU.Sc2ySwM_228.1729 Anthoceros agrestis HOM05D002342 ORTHO05D002407 2.5e-24 117.1 347 28.8
Ciclev10004121m.g Citrus clementina HOM05D002342 ORTHO05D002407 1.6e-23 114.4 131 46.6
QL05p014631 Quercus lobata HOM05D002342 ORTHO05D002407 9.0e-22 108.6 113 49.6
Actinidia38751 Actinidia chinensis HOM05D002342 ORTHO05D002407 8.4e-20 102.1 114 48.2
Nitab4.5_0006964g0030 Nicotiana tabacum HOM05D002342 ORTHO05D002407 5.5e-19 99.4 70 65.7
Lj6A517T27 Lonicera japonica HOM05D002342 ORTHO05D002407 7.1e-19 99.0 111 45.0
Lj4A826T54 Lonicera japonica HOM05D002180 ORTHO05D001339 2.7e-18 97.1 69 63.8
Eucgr.H02765 Eucalyptus grandis HOM05D002342 ORTHO05D002407 8.2e-15 85.5 88 48.9
HanXRQChr16g0515551 Helianthus annuus HOM05D002342 ORTHO05D002407 5.9e-13 79.3 111 40.5
PGSC0003DMG402026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 2.2e-12 77.4 67 52.2
AL5G12310 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 5.0e-12 76.3 120 35.8
SHI33086 Sapria himalayana HOM05D002342 ORTHO05D002407 3.2e-11 73.6 199 27.1
SHI34692 Sapria himalayana HOM05D000024 ORTHO05D000006 4.3e-08 63.2 140 29.3


User provided reference genes

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