Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1367.1 710 100.0
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1332.8 710 97.9
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1323.1 710 96.1
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1300.0 709 94.8
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1293.9 710 93.9
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1255.4 707 91.7
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1253.0 708 91.2
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1231.1 705 89.2
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1223.0 705 89.2
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1220.7 702 88.3
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1219.5 700 88.6
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1216.4 698 88.4
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1211.4 705 87.1
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1209.9 704 87.5
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1209.5 707 87.6
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1207.6 705 87.2
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1205.3 710 87.9
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1204.1 707 87.6
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1201.0 697 86.5
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1199.9 704 86.1
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1199.1 726 88.0
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1197.2 705 86.8
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1195.6 704 85.4
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1195.6 705 85.8
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1194.9 706 85.7
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1194.9 704 86.5
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1194.1 708 86.3
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1193.7 711 86.2
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1193.7 694 86.7
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1193.3 705 87.2
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1193.3 706 86.3
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1191.8 705 85.7
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1191.8 710 85.6
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1191.8 706 86.1
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1188.3 699 86.1
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1187.9 707 86.1
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1187.2 700 85.9
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1186.8 706 85.4
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1185.6 699 85.8
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1184.1 709 85.9
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1183.7 706 84.7
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1181.8 735 83.3
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1177.5 708 85.0
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1177.5 701 84.9
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1176.8 698 84.8
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1175.2 694 85.3
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1172.9 701 84.9
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1157.5 695 88.1
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1156.4 694 84.0
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1156.0 705 85.7
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1154.4 688 85.6
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1152.1 709 83.4
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1151.0 705 83.8
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1148.3 702 81.3
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1146.7 704 83.5
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1146.7 704 83.5
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1144.4 703 83.9
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1140.9 706 82.2
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1140.6 702 81.2
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 0.0e+00 1137.9 702 80.9
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1134.8 710 83.4
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1133.2 708 83.8
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1129.4 699 81.3
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 0.0e+00 1129.0 702 81.2
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1123.6 681 85.0
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1122.8 700 81.3
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1122.5 734 80.7
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1120.9 699 81.8
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1120.5 699 81.7
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1118.2 700 80.7
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1117.8 699 81.5
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1117.8 699 81.5
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1116.3 699 81.4
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1114.8 699 81.4
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 0.0e+00 1113.2 700 82.3
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1111.3 704 80.0
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1110.9 701 80.2
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1108.6 702 82.5
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1103.2 706 79.2
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1101.3 706 79.0
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1100.9 697 79.3
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1098.2 706 79.2
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1098.2 706 79.2
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1098.2 706 79.2
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 0.0e+00 1098.2 695 79.3
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 0.0e+00 1098.2 696 80.5
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1095.1 704 78.4
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 0.0e+00 1094.3 709 80.1
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 0.0e+00 1090.5 656 85.1
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 4.4e-311 1070.8 621 87.4
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 6.9e-309 1063.5 614 88.4
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 5.0e-307 1057.4 660 82.3
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.6e-305 1052.4 693 77.8
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.6e-305 1052.4 574 95.8
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 1.6e-305 1052.4 687 77.3
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 6.1e-305 1050.4 700 76.6
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 3.0e-304 1048.1 700 79.4
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 9.7e-303 1043.1 713 75.6
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 6.5e-299 1030.4 657 79.5
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 3.9e-296 1021.1 707 73.3
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 8.8e-296 1020.0 699 77.5
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.1e-293 1011.1 699 73.8
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 4.5e-292 1007.7 584 87.7
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.0e-288 994.6 732 73.9
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 9.1e-285 983.4 647 76.7
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 5.9e-284 980.7 704 73.6
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 5.5e-282 974.2 712 72.6
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 3.0e-280 968.4 541 90.8
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 2.0e-263 912.5 728 69.6
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 4.9e-262 907.9 696 71.8
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.6e-257 892.9 699 67.4
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.5e-242 843.2 529 81.7
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.3e-240 835.9 566 74.7
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.3e-235 820.1 534 79.4
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 3.0e-227 792.3 448 90.6
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 4.8e-209 731.9 618 64.1
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 1.8e-208 729.9 671 56.6
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.8e-198 695.7 557 70.4
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 7.2e-197 691.4 627 56.5
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.1e-192 676.0 406 85.5
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.9e-191 671.8 392 87.5
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 9.7e-178 627.9 517 66.7
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.0e-174 617.8 632 50.2
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.9e-166 589.7 640 48.9
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 3.0e-163 579.7 640 48.4
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.6e-158 561.6 400 76.2
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.4e-138 496.5 638 42.2
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 4.4e-138 496.1 715 43.9
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.7e-137 493.0 630 43.0
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.3e-134 483.8 641 42.0
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.8e-132 476.9 624 43.9
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.0e-126 458.4 303 75.9
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.6e-109 399.4 395 53.9
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.6e-106 390.6 399 58.9
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.3e-105 388.3 245 81.2
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 3.2e-88 330.5 221 71.5
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 7.2e-72 276.2 224 68.3
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.3e-68 265.4 130 97.7
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.9e-56 224.9 171 72.5
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.7e-36 158.7 138 54.3
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.8e-31 141.4 78 85.9
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 2.9e-28 131.3 101 65.3
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 6.6e-25 120.2 63 85.7
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 2.8e-23 114.8 59 88.1
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 1.3e-20 105.9 98 55.1
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 3.3e-16 91.3 56 76.8
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 3.6e-15 87.8 59 74.6
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 3.6e-15 87.8 59 74.6
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 4.0e-14 84.3 62 71.0
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 3.7e-12 77.8 55 72.7
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 2.4e-11 75.1 55 70.9
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.4e-06 58.5 30 76.7


User provided reference genes

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